data_2ZT9
#
_model_server_result.job_id            fsE-Cd6CITNa0p-esPpglA 
_model_server_result.datetime_utc      '2024-11-06 01:39:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zt9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    2ZT9 
#
_exptl.entry_id    2ZT9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2ZT9 
_cell.length_a            159.225 
_cell.length_b            159.225 
_cell.length_c            365.886 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.6125 137.892895 60.981 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 I N N 
? 9 J N N 
? 9 K N N 
? 9 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc5 O MG CLA . B CLA 201 1_555 W O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc6 C N TYR 1 C TYR 1 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc7 C NE2 HIS 26 C HIS 26 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc8 D SG CYS 108 D CYS 108 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? 
metalc ? metalc9 D ND1 HIS 110 D HIS 110 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc10 D SG CYS 126 D CYS 126 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc11 D ND1 HIS 129 D HIS 129 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 375 n n 
CHA C4D HEM doub 376 n n 
CHA HHA HEM sing 377 n n 
CHB C4A HEM sing 378 n n 
CHB C1B HEM doub 379 n n 
CHB HHB HEM sing 380 n n 
CHC C4B HEM sing 381 n n 
CHC C1C HEM doub 382 n n 
CHC HHC HEM sing 383 n n 
CHD C4C HEM doub 384 n n 
CHD C1D HEM sing 385 n n 
CHD HHD HEM sing 386 n n 
C1A C2A HEM doub 387 n y 
C1A NA HEM sing 388 n y 
C2A C3A HEM sing 389 n y 
C2A CAA HEM sing 390 n n 
C3A C4A HEM doub 391 n y 
C3A CMA HEM sing 392 n n 
C4A NA HEM sing 393 n y 
CMA HMA HEM sing 394 n n 
CMA HMAA HEM sing 395 n n 
CMA HMAB HEM sing 396 n n 
CAA CBA HEM sing 397 n n 
CAA HAA HEM sing 398 n n 
CAA HAAA HEM sing 399 n n 
CBA CGA HEM sing 400 n n 
CBA HBA HEM sing 401 n n 
CBA HBAA HEM sing 402 n n 
CGA O1A HEM doub 403 n n 
CGA O2A HEM sing 404 n n 
C1B C2B HEM sing 405 n n 
C1B NB HEM sing 406 n n 
C2B C3B HEM doub 407 n n 
C2B CMB HEM sing 408 n n 
C3B C4B HEM sing 409 n n 
C3B CAB HEM sing 410 n n 
C4B NB HEM doub 411 n n 
CMB HMB HEM sing 412 n n 
CMB HMBA HEM sing 413 n n 
CMB HMBB HEM sing 414 n n 
CAB CBB HEM doub 415 n n 
CAB HAB HEM sing 416 n n 
CBB HBB HEM sing 417 n n 
CBB HBBA HEM sing 418 n n 
C1C C2C HEM sing 419 n y 
C1C NC HEM sing 420 n y 
C2C C3C HEM doub 421 n y 
C2C CMC HEM sing 422 n n 
C3C C4C HEM sing 423 n y 
C3C CAC HEM sing 424 n n 
C4C NC HEM sing 425 n y 
CMC HMC HEM sing 426 n n 
CMC HMCA HEM sing 427 n n 
CMC HMCB HEM sing 428 n n 
CAC CBC HEM doub 429 n n 
CAC HAC HEM sing 430 n n 
CBC HBC HEM sing 431 n n 
CBC HBCA HEM sing 432 n n 
C1D C2D HEM sing 433 n n 
C1D ND HEM doub 434 n n 
C2D C3D HEM doub 435 n n 
C2D CMD HEM sing 436 n n 
C3D C4D HEM sing 437 n n 
C3D CAD HEM sing 438 n n 
C4D ND HEM sing 439 n n 
CMD HMD HEM sing 440 n n 
CMD HMDA HEM sing 441 n n 
CMD HMDB HEM sing 442 n n 
CAD CBD HEM sing 443 n n 
CAD HAD HEM sing 444 n n 
CAD HADA HEM sing 445 n n 
CBD CGD HEM sing 446 n n 
CBD HBD HEM sing 447 n n 
CBD HBDA HEM sing 448 n n 
CGD O1D HEM doub 449 n n 
CGD O2D HEM sing 450 n n 
O2A H2A HEM sing 451 n n 
O2D H2D HEM sing 452 n n 
FE NA HEM sing 453 n n 
FE NB HEM sing 454 n n 
FE NC HEM sing 455 n n 
FE ND HEM sing 456 n n 
#
_atom_sites.entry_id                     2ZT9 
_atom_sites.fract_transf_matrix[1][1]    0.00628 
_atom_sites.fract_transf_matrix[1][2]    0.003626 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 HEM A 1 301 301 HEM HEM . 
J 9 HEM A 1 302 302 HEM HEM . 
K 9 HEM A 1 303 303 HEM HEM . 
L 10 UMQ A 1 304 101 UMQ UMQ . 
M 10 UMQ A 1 305 103 UMQ UMQ . 
N 10 UMQ A 1 306 104 UMQ UMQ . 
O 11 CLA B 1 201 201 CLA CLA . 
P 12 OPC B 1 202 1 OPC OPC . 
Q 13 SQD B 1 203 11 SQD SQD . 
R 9 HEM C 1 301 301 HEM HEM . 
S 14 FES D 1 200 200 FES FES . 
T 15 BCR G 1 101 101 BCR BCR . 
U 12 OPC H 1 30 2 OPC OPC . 
V 16 HOH A 1 401 401 HOH HOH . 
W 16 HOH B 1 211 211 HOH HOH . 
W 16 HOH B 2 212 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 9 -27.801 73.118 12.908 1 43.53 ? CHA HEM 302 A 1 
HETATM 2 C CHB HEM . . . J 9 -32.203 72.803 14.856 1 42.69 ? CHB HEM 302 A 1 
HETATM 3 C CHC HEM . . . J 9 -32.365 68.18 13.51 1 43.34 ? CHC HEM 302 A 1 
HETATM 4 C CHD HEM . . . J 9 -27.776 68.337 12.028 1 44.03 ? CHD HEM 302 A 1 
HETATM 5 C C1A HEM . . . J 9 -29.013 73.45 13.461 1 43.17 ? C1A HEM 302 A 1 
HETATM 6 C C2A HEM . . . J 9 -29.476 74.8 13.73 1 43.49 ? C2A HEM 302 A 1 
HETATM 7 C C3A HEM . . . J 9 -30.702 74.718 14.283 1 42.83 ? C3A HEM 302 A 1 
HETATM 8 C C4A HEM . . . J 9 -31.032 73.308 14.368 1 42.44 ? C4A HEM 302 A 1 
HETATM 9 C CMA HEM . . . J 9 -31.624 75.871 14.76 1 40.66 ? CMA HEM 302 A 1 
HETATM 10 C CAA HEM . . . J 9 -28.676 76.084 13.435 1 44.67 ? CAA HEM 302 A 1 
HETATM 11 C CBA HEM . . . J 9 -28.363 76.237 11.943 1 49.76 ? CBA HEM 302 A 1 
HETATM 12 C CGA HEM . . . J 9 -29.547 76.005 11.027 1 52.74 ? CGA HEM 302 A 1 
HETATM 13 O O1A HEM . . . J 9 -29.338 75.418 9.918 1 54.76 ? O1A HEM 302 A 1 
HETATM 14 O O2A HEM . . . J 9 -30.693 76.413 11.379 1 53.26 ? O2A HEM 302 A 1 
HETATM 15 C C1B HEM . . . J 9 -32.637 71.519 14.647 1 42.29 ? C1B HEM 302 A 1 
HETATM 16 C C2B HEM . . . J 9 -33.909 70.982 15.074 1 42.03 ? C2B HEM 302 A 1 
HETATM 17 C C3B HEM . . . J 9 -33.954 69.697 14.707 1 41.88 ? C3B HEM 302 A 1 
HETATM 18 C C4B HEM . . . J 9 -32.709 69.396 14.035 1 42.36 ? C4B HEM 302 A 1 
HETATM 19 C CMB HEM . . . J 9 -34.983 71.795 15.833 1 42.54 ? CMB HEM 302 A 1 
HETATM 20 C CAB HEM . . . J 9 -35.097 68.677 14.921 1 42.06 ? CAB HEM 302 A 1 
HETATM 21 C CBB HEM . . . J 9 -35.977 68.801 15.919 1 42.71 ? CBB HEM 302 A 1 
HETATM 22 C C1C HEM . . . J 9 -31.174 67.875 12.899 1 44.09 ? C1C HEM 302 A 1 
HETATM 23 C C2C HEM . . . J 9 -30.947 66.715 12.056 1 44.53 ? C2C HEM 302 A 1 
HETATM 24 C C3C HEM . . . J 9 -29.679 66.76 11.643 1 43.91 ? C3C HEM 302 A 1 
HETATM 25 C C4C HEM . . . J 9 -29.074 67.945 12.21 1 43.83 ? C4C HEM 302 A 1 
HETATM 26 C CMC HEM . . . J 9 -32.011 65.642 11.714 1 44.14 ? CMC HEM 302 A 1 
HETATM 27 C CAC HEM . . . J 9 -28.97 65.751 10.718 1 44 ? CAC HEM 302 A 1 
HETATM 28 C CBC HEM . . . J 9 -28.802 64.479 11.076 1 44.32 ? CBC HEM 302 A 1 
HETATM 29 C C1D HEM . . . J 9 -27.301 69.613 12.213 1 44.22 ? C1D HEM 302 A 1 
HETATM 30 C C2D HEM . . . J 9 -25.905 70.021 12.135 1 44.93 ? C2D HEM 302 A 1 
HETATM 31 C C3D HEM . . . J 9 -25.923 71.527 12.417 1 44.5 ? C3D HEM 302 A 1 
HETATM 32 C C4D HEM . . . J 9 -27.318 71.86 12.633 1 43.88 ? C4D HEM 302 A 1 
HETATM 33 C CMD HEM . . . J 9 -24.668 69.133 11.85 1 44.45 ? CMD HEM 302 A 1 
HETATM 34 C CAD HEM . . . J 9 -24.716 72.481 12.443 1 45.58 ? CAD HEM 302 A 1 
HETATM 35 C CBD HEM . . . J 9 -24.065 72.425 11.059 1 48.44 ? CBD HEM 302 A 1 
HETATM 36 C CGD HEM . . . J 9 -23.508 73.761 10.624 1 50.96 ? CGD HEM 302 A 1 
HETATM 37 O O1D HEM . . . J 9 -22.975 74.518 11.484 1 52.64 ? O1D HEM 302 A 1 
HETATM 38 O O2D HEM . . . J 9 -23.59 74.071 9.401 1 51.6 ? O2D HEM 302 A 1 
HETATM 39 N NA HEM . . . J 9 -29.985 72.56 13.861 1 42.36 ? NA HEM 302 A 1 
HETATM 40 N NB HEM . . . J 9 -31.922 70.525 14.014 1 42.4 ? NB HEM 302 A 1 
HETATM 41 N NC HEM . . . J 9 -30.009 68.612 12.977 1 43.32 ? NC HEM 302 A 1 
HETATM 42 N ND HEM . . . J 9 -28.093 70.716 12.51 1 43.13 ? ND HEM 302 A 1 
HETATM 43 FE FE HEM . . . J 9 -29.976 70.647 13.365 1 42.41 ? FE HEM 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#