data_2ZT9 # _model_server_result.job_id 1tKANNdRJjGJNE3ZN5Zo2w _model_server_result.datetime_utc '2024-11-22 06:38:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 2ZT9 # _exptl.entry_id 2ZT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.589 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYL-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZT9 _cell.length_a 159.225 _cell.length_b 159.225 _cell.length_c 365.886 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.6125 137.892895 60.981 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 L N N ? 10 M N N ? 10 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 O MG CLA . B CLA 201 1_555 W O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C NE2 HIS 26 C HIS 26 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 D SG CYS 108 D CYS 108 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc9 D ND1 HIS 110 D HIS 110 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc10 D SG CYS 126 D CYS 126 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc11 D ND1 HIS 129 D HIS 129 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C23 H44 O11' _chem_comp.formula_weight 496.589 _chem_comp.id UMQ _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYL-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms UNDECYL-BETA-D-MALTOPYRANOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O2 UMQ sing 959 n n C2 C1 UMQ sing 960 n n C2 C3 UMQ sing 961 n n C2 H21 UMQ sing 962 n n C4 C5 UMQ sing 963 n n C4 O4 UMQ sing 964 n n C4 C3 UMQ sing 965 n n C4 H41 UMQ sing 966 n n C5 C6 UMQ sing 967 n n C5 O5 UMQ sing 968 n n C5 H51 UMQ sing 969 n n C6 O6 UMQ sing 970 n n C6 H61 UMQ sing 971 n n C6 H62 UMQ sing 972 n n O2 HO21 UMQ sing 973 n n O4 HO41 UMQ sing 974 n n C1 O1 UMQ sing 975 n n C1 O5 UMQ sing 976 n n C1 H11 UMQ sing 977 n n C3 O3 UMQ sing 978 n n C3 H31 UMQ sing 979 n n O1 C4' UMQ sing 980 n n O3 HO31 UMQ sing 981 n n O6 HO61 UMQ sing 982 n n C1' C2' UMQ sing 983 n n C1' O1' UMQ sing 984 n n C1' O5' UMQ sing 985 n n C1' "H1'1" UMQ sing 986 n n C2' C3' UMQ sing 987 n n C2' O2' UMQ sing 988 n n C2' "H2'1" UMQ sing 989 n n C3' C4' UMQ sing 990 n n C3' O3' UMQ sing 991 n n C3' "H3'1" UMQ sing 992 n n C4' C5' UMQ sing 993 n n C4' "H4'1" UMQ sing 994 n n C5' C6' UMQ sing 995 n n C5' O5' UMQ sing 996 n n C5' "H5'1" UMQ sing 997 n n C6' O6' UMQ sing 998 n n C6' "H6'1" UMQ sing 999 n n C6' "H6'2" UMQ sing 1000 n n O1' CA UMQ sing 1001 n n O3' HO3' UMQ sing 1002 n n O6' HO6' UMQ sing 1003 n n O2' HO2' UMQ sing 1004 n n CA CB UMQ sing 1005 n n CA HA1 UMQ sing 1006 n n CA HA2 UMQ sing 1007 n n CB CC UMQ sing 1008 n n CB HB1 UMQ sing 1009 n n CB HB2 UMQ sing 1010 n n CC CD UMQ sing 1011 n n CC HC1 UMQ sing 1012 n n CC HC2 UMQ sing 1013 n n CD CF UMQ sing 1014 n n CD HD1 UMQ sing 1015 n n CD HD2 UMQ sing 1016 n n CF CG UMQ sing 1017 n n CF HF1 UMQ sing 1018 n n CF HF2 UMQ sing 1019 n n CG CH UMQ sing 1020 n n CG HG1 UMQ sing 1021 n n CG HG2 UMQ sing 1022 n n CH CI UMQ sing 1023 n n CH HH1 UMQ sing 1024 n n CH HH2 UMQ sing 1025 n n CI CJ UMQ sing 1026 n n CI HI1 UMQ sing 1027 n n CI HI2 UMQ sing 1028 n n CJ CK UMQ sing 1029 n n CJ HJ1 UMQ sing 1030 n n CJ HJ2 UMQ sing 1031 n n CK CL UMQ sing 1032 n n CK HK1 UMQ sing 1033 n n CK HK2 UMQ sing 1034 n n CL HL1 UMQ sing 1035 n n CL HL2 UMQ sing 1036 n n CL HL3 UMQ sing 1037 n n # _atom_sites.entry_id 2ZT9 _atom_sites.fract_transf_matrix[1][1] 0.00628 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 UMQ A 1 304 101 UMQ UMQ . M 10 UMQ A 1 305 103 UMQ UMQ . N 10 UMQ A 1 306 104 UMQ UMQ . O 11 CLA B 1 201 201 CLA CLA . P 12 OPC B 1 202 1 OPC OPC . Q 13 SQD B 1 203 11 SQD SQD . R 9 HEM C 1 301 301 HEM HEM . S 14 FES D 1 200 200 FES FES . T 15 BCR G 1 101 101 BCR BCR . U 12 OPC H 1 30 2 OPC OPC . V 16 HOH A 1 401 401 HOH HOH . W 16 HOH B 1 211 211 HOH HOH . W 16 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UMQ . . . L 10 -69.986 78.851 18.273 1 110.39 ? C2 UMQ 304 A 1 HETATM 2 C C4 UMQ . . . L 10 -68.591 76.977 19.218 1 110.64 ? C4 UMQ 304 A 1 HETATM 3 C C5 UMQ . . . L 10 -67.74 77.071 17.944 1 110.83 ? C5 UMQ 304 A 1 HETATM 4 C C6 UMQ . . . L 10 -67.057 75.757 17.573 1 110.55 ? C6 UMQ 304 A 1 HETATM 5 O O2 UMQ . . . L 10 -70.5 80.161 18.526 1 111.26 ? O2 UMQ 304 A 1 HETATM 6 O O4 UMQ . . . L 10 -67.784 76.55 20.324 1 110.19 ? O4 UMQ 304 A 1 HETATM 7 C C1 UMQ . . . L 10 -69.099 78.874 17.025 1 109.79 ? C1 UMQ 304 A 1 HETATM 8 C C3 UMQ . . . L 10 -69.22 78.346 19.5 1 110.44 ? C3 UMQ 304 A 1 HETATM 9 O O1 UMQ . . . L 10 -68.081 79.877 17.173 1 108.32 ? O1 UMQ 304 A 1 HETATM 10 O O3 UMQ . . . L 10 -70.104 78.294 20.627 1 110.31 ? O3 UMQ 304 A 1 HETATM 11 O O5 UMQ . . . L 10 -68.512 77.575 16.828 1 110.87 ? O5 UMQ 304 A 1 HETATM 12 O O6 UMQ . . . L 10 -65.652 75.912 17.799 1 110.99 ? O6 UMQ 304 A 1 HETATM 13 C C1' UMQ . . . L 10 -66.122 82.041 14.195 1 101.62 ? C1' UMQ 304 A 1 HETATM 14 C C2' UMQ . . . L 10 -67.284 82.536 14.657 1 103.58 ? C2' UMQ 304 A 1 HETATM 15 C C3' UMQ . . . L 10 -67.965 81.885 15.843 1 105.19 ? C3' UMQ 304 A 1 HETATM 16 C C4' UMQ . . . L 10 -67.601 80.396 15.929 1 105.95 ? C4' UMQ 304 A 1 HETATM 17 C C5' UMQ . . . L 10 -66.076 80.261 15.748 1 104.52 ? C5' UMQ 304 A 1 HETATM 18 C C6' UMQ . . . L 10 -65.448 78.898 16.051 1 103.67 ? C6' UMQ 304 A 1 HETATM 19 O O1' UMQ . . . L 10 -65.159 82.891 13.514 1 97.72 ? O1' UMQ 304 A 1 HETATM 20 O O3' UMQ . . . L 10 -69.39 82.047 15.768 1 105.86 ? O3' UMQ 304 A 1 HETATM 21 O O5' UMQ . . . L 10 -65.799 80.63 14.394 1 103.29 ? O5' UMQ 304 A 1 HETATM 22 O O6' UMQ . . . L 10 -64.716 78.962 17.282 1 101.67 ? O6' UMQ 304 A 1 HETATM 23 O O2' UMQ . . . L 10 -67.839 83.604 14.083 1 103.66 ? O2' UMQ 304 A 1 HETATM 24 C CA UMQ . . . L 10 -63.847 83.056 14.047 1 92.99 ? CA UMQ 304 A 1 HETATM 25 C CB UMQ . . . L 10 -62.916 81.994 13.482 1 88.39 ? CB UMQ 304 A 1 HETATM 26 C CC UMQ . . . L 10 -61.475 82.352 13.794 1 85.02 ? CC UMQ 304 A 1 HETATM 27 C CD UMQ . . . L 10 -60.598 82.265 12.556 1 82.05 ? CD UMQ 304 A 1 HETATM 28 C CF UMQ . . . L 10 -59.206 81.784 12.943 1 79.77 ? CF UMQ 304 A 1 HETATM 29 C CG UMQ . . . L 10 -58.114 82.408 12.088 1 77.35 ? CG UMQ 304 A 1 HETATM 30 C CH UMQ . . . L 10 -57.391 83.499 12.867 1 75.96 ? CH UMQ 304 A 1 HETATM 31 C CI UMQ . . . L 10 -55.935 83.138 13.116 1 74.09 ? CI UMQ 304 A 1 HETATM 32 C CJ UMQ . . . L 10 -55.541 83.424 14.554 1 72.83 ? CJ UMQ 304 A 1 HETATM 33 C CK UMQ . . . L 10 -54.155 82.858 14.817 1 73.52 ? CK UMQ 304 A 1 HETATM 34 C CL UMQ . . . L 10 -54.202 81.662 15.747 1 73.91 ? CL UMQ 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #