data_2ZT9 # _model_server_result.job_id 2d9vk_t4vaMUUFvkZW3Vqw _model_server_result.datetime_utc '2024-11-22 06:34:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":306}' # _entry.id 2ZT9 # _exptl.entry_id 2ZT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.589 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UNDECYL-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZT9 _cell.length_a 159.225 _cell.length_b 159.225 _cell.length_c 365.886 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.6125 137.892895 60.981 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 L N N ? 10 M N N ? 10 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 108 D CYS 108 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 D SG CYS 113 D CYS 113 1_555 D SG CYS 128 D CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 O MG CLA . B CLA 201 1_555 W O HOH . B HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 C N TYR 1 C TYR 1 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 C NE2 HIS 26 C HIS 26 1_555 R FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 D SG CYS 108 D CYS 108 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc9 D ND1 HIS 110 D HIS 110 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc10 D SG CYS 126 D CYS 126 1_555 S FE1 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc11 D ND1 HIS 129 D HIS 129 1_555 S FE2 FES . D FES 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C23 H44 O11' _chem_comp.formula_weight 496.589 _chem_comp.id UMQ _chem_comp.mon_nstd_flag . _chem_comp.name UNDECYL-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms UNDECYL-BETA-D-MALTOPYRANOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O2 UMQ sing 959 n n C2 C1 UMQ sing 960 n n C2 C3 UMQ sing 961 n n C2 H21 UMQ sing 962 n n C4 C5 UMQ sing 963 n n C4 O4 UMQ sing 964 n n C4 C3 UMQ sing 965 n n C4 H41 UMQ sing 966 n n C5 C6 UMQ sing 967 n n C5 O5 UMQ sing 968 n n C5 H51 UMQ sing 969 n n C6 O6 UMQ sing 970 n n C6 H61 UMQ sing 971 n n C6 H62 UMQ sing 972 n n O2 HO21 UMQ sing 973 n n O4 HO41 UMQ sing 974 n n C1 O1 UMQ sing 975 n n C1 O5 UMQ sing 976 n n C1 H11 UMQ sing 977 n n C3 O3 UMQ sing 978 n n C3 H31 UMQ sing 979 n n O1 C4' UMQ sing 980 n n O3 HO31 UMQ sing 981 n n O6 HO61 UMQ sing 982 n n C1' C2' UMQ sing 983 n n C1' O1' UMQ sing 984 n n C1' O5' UMQ sing 985 n n C1' "H1'1" UMQ sing 986 n n C2' C3' UMQ sing 987 n n C2' O2' UMQ sing 988 n n C2' "H2'1" UMQ sing 989 n n C3' C4' UMQ sing 990 n n C3' O3' UMQ sing 991 n n C3' "H3'1" UMQ sing 992 n n C4' C5' UMQ sing 993 n n C4' "H4'1" UMQ sing 994 n n C5' C6' UMQ sing 995 n n C5' O5' UMQ sing 996 n n C5' "H5'1" UMQ sing 997 n n C6' O6' UMQ sing 998 n n C6' "H6'1" UMQ sing 999 n n C6' "H6'2" UMQ sing 1000 n n O1' CA UMQ sing 1001 n n O3' HO3' UMQ sing 1002 n n O6' HO6' UMQ sing 1003 n n O2' HO2' UMQ sing 1004 n n CA CB UMQ sing 1005 n n CA HA1 UMQ sing 1006 n n CA HA2 UMQ sing 1007 n n CB CC UMQ sing 1008 n n CB HB1 UMQ sing 1009 n n CB HB2 UMQ sing 1010 n n CC CD UMQ sing 1011 n n CC HC1 UMQ sing 1012 n n CC HC2 UMQ sing 1013 n n CD CF UMQ sing 1014 n n CD HD1 UMQ sing 1015 n n CD HD2 UMQ sing 1016 n n CF CG UMQ sing 1017 n n CF HF1 UMQ sing 1018 n n CF HF2 UMQ sing 1019 n n CG CH UMQ sing 1020 n n CG HG1 UMQ sing 1021 n n CG HG2 UMQ sing 1022 n n CH CI UMQ sing 1023 n n CH HH1 UMQ sing 1024 n n CH HH2 UMQ sing 1025 n n CI CJ UMQ sing 1026 n n CI HI1 UMQ sing 1027 n n CI HI2 UMQ sing 1028 n n CJ CK UMQ sing 1029 n n CJ HJ1 UMQ sing 1030 n n CJ HJ2 UMQ sing 1031 n n CK CL UMQ sing 1032 n n CK HK1 UMQ sing 1033 n n CK HK2 UMQ sing 1034 n n CL HL1 UMQ sing 1035 n n CL HL2 UMQ sing 1036 n n CL HL3 UMQ sing 1037 n n # _atom_sites.entry_id 2ZT9 _atom_sites.fract_transf_matrix[1][1] 0.00628 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 UMQ A 1 304 101 UMQ UMQ . M 10 UMQ A 1 305 103 UMQ UMQ . N 10 UMQ A 1 306 104 UMQ UMQ . O 11 CLA B 1 201 201 CLA CLA . P 12 OPC B 1 202 1 OPC OPC . Q 13 SQD B 1 203 11 SQD SQD . R 9 HEM C 1 301 301 HEM HEM . S 14 FES D 1 200 200 FES FES . T 15 BCR G 1 101 101 BCR BCR . U 12 OPC H 1 30 2 OPC OPC . V 16 HOH A 1 401 401 HOH HOH . W 16 HOH B 1 211 211 HOH HOH . W 16 HOH B 2 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 UMQ . . . N 10 -23.128 100.418 23.758 1 102.21 ? C2 UMQ 306 A 1 HETATM 2 C C4 UMQ . . . N 10 -20.909 99.478 24.424 1 102.51 ? C4 UMQ 306 A 1 HETATM 3 C C5 UMQ . . . N 10 -21.619 98.567 25.432 1 102.71 ? C5 UMQ 306 A 1 HETATM 4 C C6 UMQ . . . N 10 -20.904 98.683 26.782 1 103.11 ? C6 UMQ 306 A 1 HETATM 5 O O2 UMQ . . . N 10 -23.94 100.809 22.648 1 102.92 ? O2 UMQ 306 A 1 HETATM 6 O O4 UMQ . . . N 10 -19.767 98.783 23.918 1 102.88 ? O4 UMQ 306 A 1 HETATM 7 C C1 UMQ . . . N 10 -23.845 99.319 24.54 1 101.67 ? C1 UMQ 306 A 1 HETATM 8 C C3 UMQ . . . N 10 -21.797 99.876 23.25 1 102.34 ? C3 UMQ 306 A 1 HETATM 9 O O1 UMQ . . . N 10 -24.187 98.254 23.637 1 99.88 ? O1 UMQ 306 A 1 HETATM 10 O O3 UMQ . . . N 10 -21.133 100.841 22.43 1 102.16 ? O3 UMQ 306 A 1 HETATM 11 O O5 UMQ . . . N 10 -23.03 98.849 25.637 1 102.61 ? O5 UMQ 306 A 1 HETATM 12 O O6 UMQ . . . N 10 -21.473 97.759 27.718 1 103.19 ? O6 UMQ 306 A 1 HETATM 13 C C1' UMQ . . . N 10 -27.427 95.678 23.548 1 96.56 ? C1' UMQ 306 A 1 HETATM 14 C C2' UMQ . . . N 10 -27.621 96.933 23.146 1 96.98 ? C2' UMQ 306 A 1 HETATM 15 C C3' UMQ . . . N 10 -26.449 97.839 22.92 1 97.36 ? C3' UMQ 306 A 1 HETATM 16 C C4' UMQ . . . N 10 -25.386 97.559 23.973 1 97.95 ? C4' UMQ 306 A 1 HETATM 17 C C5' UMQ . . . N 10 -25.038 96.077 24.113 1 97.17 ? C5' UMQ 306 A 1 HETATM 18 C C6' UMQ . . . N 10 -24.642 95.806 25.558 1 96.84 ? C6' UMQ 306 A 1 HETATM 19 O O1' UMQ . . . N 10 -28.571 94.812 23.805 1 95.91 ? O1' UMQ 306 A 1 HETATM 20 O O3' UMQ . . . N 10 -26.858 99.201 23.065 1 96.84 ? O3' UMQ 306 A 1 HETATM 21 O O5' UMQ . . . N 10 -26.074 95.159 23.723 1 96.89 ? O5' UMQ 306 A 1 HETATM 22 O O6' UMQ . . . N 10 -23.217 95.768 25.65 1 96.5 ? O6' UMQ 306 A 1 HETATM 23 O O2' UMQ . . . N 10 -28.853 97.387 22.944 1 97.64 ? O2' UMQ 306 A 1 HETATM 24 C CA UMQ . . . N 10 -28.645 93.491 23.277 1 95.46 ? CA UMQ 306 A 1 HETATM 25 C CB UMQ . . . N 10 -29.557 92.64 24.147 1 95.66 ? CB UMQ 306 A 1 HETATM 26 C CC UMQ . . . N 10 -29.783 91.293 23.488 1 96.74 ? CC UMQ 306 A 1 HETATM 27 C CD UMQ . . . N 10 -30.984 90.565 24.078 1 98.7 ? CD UMQ 306 A 1 HETATM 28 C CF UMQ . . . N 10 -31.161 89.21 23.392 1 100.43 ? CF UMQ 306 A 1 HETATM 29 C CG UMQ . . . N 10 -32.337 88.405 23.944 1 101.77 ? CG UMQ 306 A 1 HETATM 30 C CH UMQ . . . N 10 -32.307 86.959 23.45 1 102.78 ? CH UMQ 306 A 1 HETATM 31 C CI UMQ . . . N 10 -33.322 86.707 22.337 1 103.6 ? CI UMQ 306 A 1 HETATM 32 C CJ UMQ . . . N 10 -33.097 85.333 21.705 1 104.28 ? CJ UMQ 306 A 1 HETATM 33 C CK UMQ . . . N 10 -34.301 84.413 21.905 1 104.94 ? CK UMQ 306 A 1 HETATM 34 C CL UMQ . . . N 10 -34.256 83.668 23.228 1 104.63 ? CL UMQ 306 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #