data_2ZTD
#
_model_server_result.job_id            aLWoQ1PQTxdkAx3ZqPWsjw 
_model_server_result.datetime_utc      '2024-12-22 05:29:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ztd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    2ZTD 
#
_exptl.entry_id    2ZTD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZTD 
_cell.length_a            88.67 
_cell.length_b            94.83 
_cell.length_c            99.21 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZTD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     2ZTD 
_atom_sites.fract_transf_matrix[1][1]    0.011278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010545 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 502 502 GOL GOL . 
D 2 GOL A 1 504 504 GOL GOL . 
E 2 GOL B 1 501 501 GOL GOL . 
F 2 GOL B 1 503 503 GOL GOL . 
G 3 HOH A 1 505 4 HOH HOH . 
G 3 HOH A 2 506 6 HOH HOH . 
G 3 HOH A 3 507 9 HOH HOH . 
G 3 HOH A 4 508 10 HOH HOH . 
G 3 HOH A 5 509 14 HOH HOH . 
G 3 HOH A 6 510 16 HOH HOH . 
G 3 HOH A 7 511 18 HOH HOH . 
G 3 HOH A 8 512 30 HOH HOH . 
G 3 HOH A 9 513 31 HOH HOH . 
G 3 HOH A 10 514 33 HOH HOH . 
G 3 HOH A 11 515 34 HOH HOH . 
G 3 HOH A 12 516 37 HOH HOH . 
G 3 HOH A 13 517 40 HOH HOH . 
G 3 HOH A 14 518 42 HOH HOH . 
G 3 HOH A 15 519 43 HOH HOH . 
G 3 HOH A 16 520 44 HOH HOH . 
G 3 HOH A 17 521 47 HOH HOH . 
G 3 HOH A 18 522 48 HOH HOH . 
G 3 HOH A 19 523 51 HOH HOH . 
G 3 HOH A 20 524 52 HOH HOH . 
G 3 HOH A 21 525 53 HOH HOH . 
G 3 HOH A 22 526 54 HOH HOH . 
G 3 HOH A 23 527 56 HOH HOH . 
G 3 HOH A 24 528 59 HOH HOH . 
G 3 HOH A 25 529 63 HOH HOH . 
G 3 HOH A 26 530 65 HOH HOH . 
G 3 HOH A 27 531 67 HOH HOH . 
G 3 HOH A 28 532 73 HOH HOH . 
G 3 HOH A 29 533 74 HOH HOH . 
G 3 HOH A 30 534 75 HOH HOH . 
G 3 HOH A 31 535 77 HOH HOH . 
G 3 HOH A 32 536 84 HOH HOH . 
G 3 HOH A 33 537 86 HOH HOH . 
G 3 HOH A 34 538 88 HOH HOH . 
G 3 HOH A 35 539 90 HOH HOH . 
G 3 HOH A 36 540 91 HOH HOH . 
G 3 HOH A 37 541 92 HOH HOH . 
G 3 HOH A 38 542 101 HOH HOH . 
G 3 HOH A 39 543 104 HOH HOH . 
G 3 HOH A 40 544 106 HOH HOH . 
G 3 HOH A 41 545 107 HOH HOH . 
G 3 HOH A 42 546 109 HOH HOH . 
G 3 HOH A 43 547 116 HOH HOH . 
G 3 HOH A 44 548 117 HOH HOH . 
G 3 HOH A 45 549 122 HOH HOH . 
G 3 HOH A 46 550 126 HOH HOH . 
G 3 HOH A 47 551 127 HOH HOH . 
G 3 HOH A 48 552 128 HOH HOH . 
G 3 HOH A 49 553 137 HOH HOH . 
G 3 HOH A 50 554 138 HOH HOH . 
G 3 HOH A 51 555 142 HOH HOH . 
G 3 HOH A 52 556 144 HOH HOH . 
G 3 HOH A 53 557 148 HOH HOH . 
G 3 HOH A 54 558 149 HOH HOH . 
G 3 HOH A 55 559 152 HOH HOH . 
G 3 HOH A 56 560 154 HOH HOH . 
G 3 HOH A 57 561 160 HOH HOH . 
G 3 HOH A 58 562 162 HOH HOH . 
G 3 HOH A 59 563 166 HOH HOH . 
G 3 HOH A 60 564 170 HOH HOH . 
G 3 HOH A 61 565 172 HOH HOH . 
H 3 HOH B 1 504 7 HOH HOH . 
H 3 HOH B 2 505 8 HOH HOH . 
H 3 HOH B 3 506 13 HOH HOH . 
H 3 HOH B 4 507 15 HOH HOH . 
H 3 HOH B 5 508 20 HOH HOH . 
H 3 HOH B 6 509 23 HOH HOH . 
H 3 HOH B 7 510 26 HOH HOH . 
H 3 HOH B 8 511 27 HOH HOH . 
H 3 HOH B 9 512 28 HOH HOH . 
H 3 HOH B 10 513 29 HOH HOH . 
H 3 HOH B 11 514 32 HOH HOH . 
H 3 HOH B 12 515 35 HOH HOH . 
H 3 HOH B 13 516 41 HOH HOH . 
H 3 HOH B 14 517 55 HOH HOH . 
H 3 HOH B 15 518 58 HOH HOH . 
H 3 HOH B 16 519 61 HOH HOH . 
H 3 HOH B 17 520 62 HOH HOH . 
H 3 HOH B 18 521 64 HOH HOH . 
H 3 HOH B 19 522 66 HOH HOH . 
H 3 HOH B 20 523 68 HOH HOH . 
H 3 HOH B 21 524 69 HOH HOH . 
H 3 HOH B 22 525 70 HOH HOH . 
H 3 HOH B 23 526 72 HOH HOH . 
H 3 HOH B 24 527 76 HOH HOH . 
H 3 HOH B 25 528 78 HOH HOH . 
H 3 HOH B 26 529 79 HOH HOH . 
H 3 HOH B 27 530 85 HOH HOH . 
H 3 HOH B 28 531 89 HOH HOH . 
H 3 HOH B 29 532 93 HOH HOH . 
H 3 HOH B 30 533 98 HOH HOH . 
H 3 HOH B 31 534 100 HOH HOH . 
H 3 HOH B 32 535 102 HOH HOH . 
H 3 HOH B 33 536 103 HOH HOH . 
H 3 HOH B 34 537 110 HOH HOH . 
H 3 HOH B 35 538 115 HOH HOH . 
H 3 HOH B 36 539 118 HOH HOH . 
H 3 HOH B 37 540 119 HOH HOH . 
H 3 HOH B 38 541 129 HOH HOH . 
H 3 HOH B 39 542 130 HOH HOH . 
H 3 HOH B 40 543 131 HOH HOH . 
H 3 HOH B 41 544 135 HOH HOH . 
H 3 HOH B 42 545 139 HOH HOH . 
H 3 HOH B 43 546 140 HOH HOH . 
H 3 HOH B 44 547 141 HOH HOH . 
H 3 HOH B 45 548 147 HOH HOH . 
H 3 HOH B 46 549 150 HOH HOH . 
H 3 HOH B 47 550 155 HOH HOH . 
H 3 HOH B 48 551 158 HOH HOH . 
H 3 HOH B 49 552 159 HOH HOH . 
H 3 HOH B 50 553 161 HOH HOH . 
H 3 HOH B 51 554 167 HOH HOH . 
H 3 HOH B 52 555 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -8.906 -17.732 4.175 1 29.63 ? C1 GOL 501 B 1 
HETATM 2 O O1 GOL . . . E 2 -9.198 -16.624 3.341 1 46.05 ? O1 GOL 501 B 1 
HETATM 3 C C2 GOL . . . E 2 -7.49 -18.146 3.869 1 35.01 ? C2 GOL 501 B 1 
HETATM 4 O O2 GOL . . . E 2 -7.021 -17.185 2.959 1 36.49 ? O2 GOL 501 B 1 
HETATM 5 C C3 GOL . . . E 2 -6.656 -18.084 5.14 1 55.28 ? C3 GOL 501 B 1 
HETATM 6 O O3 GOL . . . E 2 -6.817 -19.265 5.895 1 54.68 ? O3 GOL 501 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           212 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#