data_2ZTH
#
_model_server_result.job_id            w-s91rtMtwOa9vS4n6HMgQ 
_model_server_result.datetime_utc      '2024-11-22 09:19:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zth 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":305}' 
#
_entry.id    2ZTH 
#
_exptl.entry_id    2ZTH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZTH 
_cell.length_a            32.903 
_cell.length_b            61.089 
_cell.length_c            105.369 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZTH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 143 A ASP 141 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 A OD1 ASN 172 A ASN 170 1_555 B MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     2ZTH 
_atom_sites.fract_transf_matrix[1][1]    0.030392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01637 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00949 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 300 300 MG MG . 
C 3 SAM A 1 305 305 SAM SAM . 
D 4 HOH A 1 350 350 HOH HOH . 
D 4 HOH A 2 351 351 HOH HOH . 
D 4 HOH A 3 352 352 HOH HOH . 
D 4 HOH A 4 353 353 HOH HOH . 
D 4 HOH A 5 354 354 HOH HOH . 
D 4 HOH A 6 355 355 HOH HOH . 
D 4 HOH A 7 356 356 HOH HOH . 
D 4 HOH A 8 357 357 HOH HOH . 
D 4 HOH A 9 358 358 HOH HOH . 
D 4 HOH A 10 359 359 HOH HOH . 
D 4 HOH A 11 360 360 HOH HOH . 
D 4 HOH A 12 361 361 HOH HOH . 
D 4 HOH A 13 362 362 HOH HOH . 
D 4 HOH A 14 363 363 HOH HOH . 
D 4 HOH A 15 364 364 HOH HOH . 
D 4 HOH A 16 365 365 HOH HOH . 
D 4 HOH A 17 366 366 HOH HOH . 
D 4 HOH A 18 367 367 HOH HOH . 
D 4 HOH A 19 368 368 HOH HOH . 
D 4 HOH A 20 369 369 HOH HOH . 
D 4 HOH A 21 370 370 HOH HOH . 
D 4 HOH A 22 371 371 HOH HOH . 
D 4 HOH A 23 372 372 HOH HOH . 
D 4 HOH A 24 373 373 HOH HOH . 
D 4 HOH A 25 374 374 HOH HOH . 
D 4 HOH A 26 375 375 HOH HOH . 
D 4 HOH A 27 376 376 HOH HOH . 
D 4 HOH A 28 377 377 HOH HOH . 
D 4 HOH A 29 378 378 HOH HOH . 
D 4 HOH A 30 379 379 HOH HOH . 
D 4 HOH A 31 380 380 HOH HOH . 
D 4 HOH A 32 381 381 HOH HOH . 
D 4 HOH A 33 382 382 HOH HOH . 
D 4 HOH A 34 383 383 HOH HOH . 
D 4 HOH A 35 384 384 HOH HOH . 
D 4 HOH A 36 385 385 HOH HOH . 
D 4 HOH A 37 386 386 HOH HOH . 
D 4 HOH A 38 387 387 HOH HOH . 
D 4 HOH A 39 388 388 HOH HOH . 
D 4 HOH A 40 389 389 HOH HOH . 
D 4 HOH A 41 390 390 HOH HOH . 
D 4 HOH A 42 391 391 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . C 3 10.402 11.028 16.098 1 28.36 ? N SAM 305 A 1 
HETATM 2 C CA SAM . . . C 3 11.106 10.241 15.041 1 29.72 ? CA SAM 305 A 1 
HETATM 3 C C SAM . . . C 3 10.064 9.352 14.447 1 29.59 ? C SAM 305 A 1 
HETATM 4 O O SAM . . . C 3 9.026 9.163 15.073 1 29.76 ? O SAM 305 A 1 
HETATM 5 O OXT SAM . . . C 3 10.228 8.847 13.338 1 29.99 ? OXT SAM 305 A 1 
HETATM 6 C CB SAM . . . C 3 12.343 9.47 15.539 1 29.11 ? CB SAM 305 A 1 
HETATM 7 C CG SAM . . . C 3 13.442 10.492 15.814 1 30.26 ? CG SAM 305 A 1 
HETATM 8 S SD SAM . . . C 3 14.944 9.836 16.059 1 34.06 ? SD SAM 305 A 1 
HETATM 9 C CE SAM . . . C 3 14.81 8.687 17.262 1 37.82 ? CE SAM 305 A 1 
HETATM 10 C C5' SAM . . . C 3 15.949 10.951 16.79 1 32.89 ? C5' SAM 305 A 1 
HETATM 11 C C4' SAM . . . C 3 16.198 12.124 15.849 1 32.69 ? C4' SAM 305 A 1 
HETATM 12 O O4' SAM . . . C 3 16.549 13.331 16.537 1 31.14 ? O4' SAM 305 A 1 
HETATM 13 C C3' SAM . . . C 3 17.35 11.789 14.928 1 32.31 ? C3' SAM 305 A 1 
HETATM 14 O O3' SAM . . . C 3 16.827 12.03 13.619 1 32.19 ? O3' SAM 305 A 1 
HETATM 15 C C2' SAM . . . C 3 18.511 12.682 15.401 1 31.66 ? C2' SAM 305 A 1 
HETATM 16 O O2' SAM . . . C 3 19.345 13.139 14.344 1 32.2 ? O2' SAM 305 A 1 
HETATM 17 C C1' SAM . . . C 3 17.78 13.855 16.012 1 31.73 ? C1' SAM 305 A 1 
HETATM 18 N N9 SAM . . . C 3 18.401 14.539 17.155 1 30.85 ? N9 SAM 305 A 1 
HETATM 19 C C8 SAM . . . C 3 19.038 14.025 18.221 1 32.15 ? C8 SAM 305 A 1 
HETATM 20 N N7 SAM . . . C 3 19.408 15.004 19.107 1 30.14 ? N7 SAM 305 A 1 
HETATM 21 C C5 SAM . . . C 3 18.957 16.145 18.584 1 29.47 ? C5 SAM 305 A 1 
HETATM 22 C C6 SAM . . . C 3 18.975 17.547 18.982 1 31.22 ? C6 SAM 305 A 1 
HETATM 23 N N6 SAM . . . C 3 19.58 17.912 20.14 1 32.76 ? N6 SAM 305 A 1 
HETATM 24 N N1 SAM . . . C 3 18.38 18.431 18.147 1 32.57 ? N1 SAM 305 A 1 
HETATM 25 C C2 SAM . . . C 3 17.771 18.086 16.996 1 30.93 ? C2 SAM 305 A 1 
HETATM 26 N N3 SAM . . . C 3 17.732 16.827 16.577 1 30.38 ? N3 SAM 305 A 1 
HETATM 27 C C4 SAM . . . C 3 18.297 15.843 17.317 1 29.68 ? C4 SAM 305 A 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#