data_2ZVL
#
_model_server_result.job_id            206niDyonWG87dZiL2Y4pA 
_model_server_result.datetime_utc      '2024-11-08 19:38:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zvl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":262}' 
#
_entry.id    2ZVL 
#
_exptl.entry_id    2ZVL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         87.25 
_cell.angle_beta          77.46 
_cell.angle_gamma         80.26 
_cell.entry_id            2ZVL 
_cell.length_a            74.769 
_cell.length_b            74.707 
_cell.length_c            109.049 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZVL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
? hexameric 6 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,W,X,Y,Z,AA,BA 1 1 
G,H,I,J,K,L,R,S,T,U,V,CA,DA,EA,FA,GA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 N N N 
? 4 O N N 
? 4 Q N N 
? 4 S N N 
? 4 T N N 
? 4 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 135 A CYS 135 1_555 A SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf2 C SG CYS 135 B CYS 135 1_555 C SG CYS 162 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
disulf ? disulf3 E SG CYS 135 C CYS 135 1_555 E SG CYS 162 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
disulf ? disulf4 G SG CYS 135 D CYS 135 1_555 G SG CYS 162 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
disulf ? disulf5 I SG CYS 135 E CYS 135 1_555 I SG CYS 162 E CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf6 K SG CYS 135 F CYS 135 1_555 K SG CYS 162 F CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc1 C ND1 HIS 44 B HIS 44 1_555 O ZN ZN . V ZN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc2 C ND1 HIS 246 B HIS 246 1_555 N ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc3 N ZN ZN . B ZN 262 1_555 Y O HOH . B HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc4 O ZN ZN . V ZN 1 1_555 D ND1 HIS 3 V HIS 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc5 O ZN ZN . V ZN 1 1_555 D OD2 ASP 6 V ASP 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc6 E ND1 HIS 44 C HIS 44 1_555 Q ZN ZN . W ZN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc7 Q ZN ZN . W ZN 2 1_555 F ND1 HIS 3 W HIS 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc8 Q ZN ZN . W ZN 2 1_555 F OD2 ASP 6 W ASP 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc9 I ND1 HIS 44 E HIS 44 1_555 T ZN ZN . Y ZN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc10 I ND1 HIS 246 E HIS 246 1_555 S ZN ZN . E ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc11 S ZN ZN . E ZN 262 1_555 EA O HOH . E HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc12 T ZN ZN . Y ZN 3 1_555 J ND1 HIS 3 Y HIS 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
metalc ? metalc13 T ZN ZN . Y ZN 3 1_555 J OD2 ASP 6 Y ASP 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
metalc ? metalc14 K ND1 HIS 44 F HIS 44 1_555 V ZN ZN . Z ZN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc15 V ZN ZN . Z ZN 4 1_555 L ND1 HIS 3 Z HIS 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc16 V ZN ZN . Z ZN 4 1_555 L OD2 ASP 6 Z ASP 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2ZVL 
_atom_sites.fract_transf_matrix[1][1]    0.013375 
_atom_sites.fract_transf_matrix[1][2]    -0.002296 
_atom_sites.fract_transf_matrix[1][3]    -0.002948 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013582 
_atom_sites.fract_transf_matrix[2][3]    -0.000158 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009395 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 SO4 A 1 262 1 SO4 SO4 . 
N 4 ZN B 1 262 6 ZN ZN . 
O 4 ZN V 1 1 1 ZN ZN . 
P 3 SO4 C 1 262 2 SO4 SO4 . 
Q 4 ZN W 1 2 2 ZN ZN . 
R 3 SO4 D 1 262 4 SO4 SO4 . 
S 4 ZN E 1 262 5 ZN ZN . 
T 4 ZN Y 1 3 3 ZN ZN . 
U 3 SO4 F 1 262 3 SO4 SO4 . 
V 4 ZN Z 1 4 4 ZN ZN . 
W 5 HOH A 1 269 7 HOH HOH . 
W 5 HOH A 2 276 14 HOH HOH . 
W 5 HOH A 3 304 42 HOH HOH . 
W 5 HOH A 4 308 46 HOH HOH . 
W 5 HOH A 5 313 51 HOH HOH . 
W 5 HOH A 6 320 58 HOH HOH . 
W 5 HOH A 7 330 68 HOH HOH . 
W 5 HOH A 8 341 79 HOH HOH . 
W 5 HOH A 9 372 110 HOH HOH . 
W 5 HOH A 10 373 111 HOH HOH . 
X 5 HOH U 1 328 66 HOH HOH . 
Y 5 HOH B 1 264 2 HOH HOH . 
Y 5 HOH B 2 266 4 HOH HOH . 
Y 5 HOH B 3 277 15 HOH HOH . 
Y 5 HOH B 4 286 24 HOH HOH . 
Y 5 HOH B 5 305 43 HOH HOH . 
Y 5 HOH B 6 306 44 HOH HOH . 
Y 5 HOH B 7 307 45 HOH HOH . 
Y 5 HOH B 8 310 48 HOH HOH . 
Y 5 HOH B 9 312 50 HOH HOH . 
Y 5 HOH B 10 316 54 HOH HOH . 
Y 5 HOH B 11 318 56 HOH HOH . 
Y 5 HOH B 12 321 59 HOH HOH . 
Y 5 HOH B 13 335 73 HOH HOH . 
Y 5 HOH B 14 342 80 HOH HOH . 
Y 5 HOH B 15 343 81 HOH HOH . 
Y 5 HOH B 16 344 82 HOH HOH . 
Y 5 HOH B 17 345 83 HOH HOH . 
Y 5 HOH B 18 346 84 HOH HOH . 
Y 5 HOH B 19 347 85 HOH HOH . 
Y 5 HOH B 20 348 86 HOH HOH . 
Y 5 HOH B 21 349 87 HOH HOH . 
Y 5 HOH B 22 350 88 HOH HOH . 
Y 5 HOH B 23 361 99 HOH HOH . 
Y 5 HOH B 24 368 106 HOH HOH . 
Y 5 HOH B 25 375 113 HOH HOH . 
Y 5 HOH B 26 381 119 HOH HOH . 
Z 5 HOH V 1 284 22 HOH HOH . 
Z 5 HOH V 2 324 62 HOH HOH . 
Z 5 HOH V 3 351 89 HOH HOH . 
AA 5 HOH C 1 268 6 HOH HOH . 
AA 5 HOH C 2 272 10 HOH HOH . 
AA 5 HOH C 3 274 12 HOH HOH . 
AA 5 HOH C 4 278 16 HOH HOH . 
AA 5 HOH C 5 281 19 HOH HOH . 
AA 5 HOH C 6 282 20 HOH HOH . 
AA 5 HOH C 7 292 30 HOH HOH . 
AA 5 HOH C 8 293 31 HOH HOH . 
AA 5 HOH C 9 297 35 HOH HOH . 
AA 5 HOH C 10 302 40 HOH HOH . 
AA 5 HOH C 11 317 55 HOH HOH . 
AA 5 HOH C 12 326 64 HOH HOH . 
AA 5 HOH C 13 337 75 HOH HOH . 
AA 5 HOH C 14 352 90 HOH HOH . 
AA 5 HOH C 15 353 91 HOH HOH . 
AA 5 HOH C 16 379 117 HOH HOH . 
AA 5 HOH C 17 380 118 HOH HOH . 
BA 5 HOH W 1 270 8 HOH HOH . 
BA 5 HOH W 2 338 76 HOH HOH . 
BA 5 HOH W 3 339 77 HOH HOH . 
CA 5 HOH D 1 265 3 HOH HOH . 
CA 5 HOH D 2 279 17 HOH HOH . 
CA 5 HOH D 3 283 21 HOH HOH . 
CA 5 HOH D 4 294 32 HOH HOH . 
CA 5 HOH D 5 295 33 HOH HOH . 
CA 5 HOH D 6 298 36 HOH HOH . 
CA 5 HOH D 7 311 49 HOH HOH . 
CA 5 HOH D 8 322 60 HOH HOH . 
CA 5 HOH D 9 325 63 HOH HOH . 
CA 5 HOH D 10 331 69 HOH HOH . 
CA 5 HOH D 11 332 70 HOH HOH . 
CA 5 HOH D 12 333 71 HOH HOH . 
CA 5 HOH D 13 340 78 HOH HOH . 
CA 5 HOH D 14 354 92 HOH HOH . 
CA 5 HOH D 15 359 97 HOH HOH . 
CA 5 HOH D 16 360 98 HOH HOH . 
CA 5 HOH D 17 364 102 HOH HOH . 
CA 5 HOH D 18 376 114 HOH HOH . 
DA 5 HOH X 1 314 52 HOH HOH . 
EA 5 HOH E 1 267 5 HOH HOH . 
EA 5 HOH E 2 271 9 HOH HOH . 
EA 5 HOH E 3 285 23 HOH HOH . 
EA 5 HOH E 4 289 27 HOH HOH . 
EA 5 HOH E 5 290 28 HOH HOH . 
EA 5 HOH E 6 291 29 HOH HOH . 
EA 5 HOH E 7 296 34 HOH HOH . 
EA 5 HOH E 8 300 38 HOH HOH . 
EA 5 HOH E 9 309 47 HOH HOH . 
EA 5 HOH E 10 315 53 HOH HOH . 
EA 5 HOH E 11 319 57 HOH HOH . 
EA 5 HOH E 12 323 61 HOH HOH . 
EA 5 HOH E 13 327 65 HOH HOH . 
EA 5 HOH E 14 329 67 HOH HOH . 
EA 5 HOH E 15 355 93 HOH HOH . 
EA 5 HOH E 16 356 94 HOH HOH . 
EA 5 HOH E 17 374 112 HOH HOH . 
FA 5 HOH Y 1 369 107 HOH HOH . 
GA 5 HOH F 1 263 1 HOH HOH . 
GA 5 HOH F 2 273 11 HOH HOH . 
GA 5 HOH F 3 275 13 HOH HOH . 
GA 5 HOH F 4 280 18 HOH HOH . 
GA 5 HOH F 5 287 25 HOH HOH . 
GA 5 HOH F 6 288 26 HOH HOH . 
GA 5 HOH F 7 299 37 HOH HOH . 
GA 5 HOH F 8 301 39 HOH HOH . 
GA 5 HOH F 9 303 41 HOH HOH . 
GA 5 HOH F 10 334 72 HOH HOH . 
GA 5 HOH F 11 357 95 HOH HOH . 
GA 5 HOH F 12 358 96 HOH HOH . 
GA 5 HOH F 13 362 100 HOH HOH . 
GA 5 HOH F 14 363 101 HOH HOH . 
GA 5 HOH F 15 365 103 HOH HOH . 
GA 5 HOH F 16 367 105 HOH HOH . 
GA 5 HOH F 17 370 108 HOH HOH . 
GA 5 HOH F 18 371 109 HOH HOH . 
GA 5 HOH F 19 377 115 HOH HOH . 
GA 5 HOH F 20 378 116 HOH HOH . 
GA 5 HOH F 21 382 120 HOH HOH . 
HA 5 HOH Z 1 336 74 HOH HOH . 
HA 5 HOH Z 2 366 104 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         N 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -45.117 
_atom_site.Cartn_y               8.037 
_atom_site.Cartn_z               -4.864 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.7 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           262 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#