data_2ZVT # _model_server_result.job_id lpZeDr1RxgVhCuIXOfkdHg _model_server_result.datetime_utc '2024-11-02 05:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 2ZVT # _exptl.entry_id 2ZVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 2ZVT _cell.length_a 92.982 _cell.length_b 61.392 _cell.length_c 118.539 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.491 30.696 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H28 O3' _chem_comp.formula_weight 316.435 _chem_comp.id PTG _chem_comp.mon_nstd_flag . _chem_comp.name '(5E,14E)-11-oxoprosta-5,9,12,14-tetraen-1-oic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '15-deoxy-delta(12,14)-prostaglandin J2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PTG sing 277 n n C1 H1 PTG sing 278 n n C1 H1A PTG sing 279 n n C1 H1B PTG sing 280 n n C2 C3 PTG sing 281 n n C2 H2 PTG sing 282 n n C2 H2A PTG sing 283 n n C3 C4 PTG sing 284 n n C3 H3 PTG sing 285 n n C3 H3A PTG sing 286 n n C4 C5 PTG sing 287 n n C4 H4 PTG sing 288 n n C4 H4A PTG sing 289 n n C5 C6 PTG sing 290 n n C5 H5 PTG sing 291 n n C5 H5A PTG sing 292 n n C6 C7 PTG doub 293 e n C6 H6 PTG sing 294 n n C7 C8 PTG sing 295 n n C7 H7 PTG sing 296 n n C8 C10 PTG doub 297 z n C8 H8 PTG sing 298 n n C10 C11 PTG sing 299 n n C10 C15 PTG sing 300 n n C11 O12 PTG doub 301 n n C13 C14 PTG doub 302 n n C13 H13 PTG sing 303 n n C14 C15 PTG sing 304 n n C14 H14 PTG sing 305 n n C15 C16 PTG sing 306 n n C15 H15 PTG sing 307 n n C16 C17 PTG sing 308 n n C16 H16 PTG sing 309 n n C16 H16A PTG sing 310 n n C17 C18 PTG doub 311 n n C17 H17 PTG sing 312 e n C18 C19 PTG sing 313 n n C18 H18 PTG sing 314 n n C19 C20 PTG sing 315 n n C19 H19 PTG sing 316 n n C19 H19A PTG sing 317 n n C20 C21 PTG sing 318 n n C20 H20 PTG sing 319 n n C20 H20A PTG sing 320 n n C21 C22 PTG sing 321 n n C21 H21 PTG sing 322 n n C21 H21A PTG sing 323 n n C22 O23 PTG doub 324 n n C22 O24 PTG sing 325 n n C13 C11 PTG sing 326 n n O24 H28 PTG sing 327 n n # _atom_sites.entry_id 2ZVT _atom_sites.fract_transf_matrix[1][1] 0.010755 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002461 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PTG A 1 1 1 PTG 15J . D 2 PTG B 1 2 2 PTG 15J . E 3 HOH A 1 1002 1002 HOH HOH . E 3 HOH A 2 1003 1003 HOH HOH . E 3 HOH A 3 1004 1004 HOH HOH . E 3 HOH A 4 1006 1006 HOH HOH . E 3 HOH A 5 1007 1007 HOH HOH . E 3 HOH A 6 1009 1009 HOH HOH . E 3 HOH A 7 1011 1011 HOH HOH . E 3 HOH A 8 1012 1012 HOH HOH . E 3 HOH A 9 1013 1013 HOH HOH . E 3 HOH A 10 1014 1014 HOH HOH . E 3 HOH A 11 1016 1016 HOH HOH . E 3 HOH A 12 1017 1017 HOH HOH . E 3 HOH A 13 1018 1018 HOH HOH . E 3 HOH A 14 1019 1019 HOH HOH . E 3 HOH A 15 1020 1020 HOH HOH . E 3 HOH A 16 1022 1022 HOH HOH . E 3 HOH A 17 1026 1026 HOH HOH . E 3 HOH A 18 1027 1027 HOH HOH . E 3 HOH A 19 1028 1028 HOH HOH . E 3 HOH A 20 1030 1030 HOH HOH . E 3 HOH A 21 1031 1031 HOH HOH . E 3 HOH A 22 1034 1034 HOH HOH . E 3 HOH A 23 1035 1035 HOH HOH . E 3 HOH A 24 1037 1037 HOH HOH . E 3 HOH A 25 1040 1040 HOH HOH . E 3 HOH A 26 1045 1045 HOH HOH . E 3 HOH A 27 1048 1048 HOH HOH . E 3 HOH A 28 1049 1049 HOH HOH . E 3 HOH A 29 1051 1051 HOH HOH . E 3 HOH A 30 1052 1052 HOH HOH . E 3 HOH A 31 1055 1055 HOH HOH . E 3 HOH A 32 1056 1056 HOH HOH . E 3 HOH A 33 1057 1057 HOH HOH . E 3 HOH A 34 1058 1058 HOH HOH . E 3 HOH A 35 1061 1061 HOH HOH . E 3 HOH A 36 1063 1063 HOH HOH . E 3 HOH A 37 1064 1064 HOH HOH . E 3 HOH A 38 1065 1065 HOH HOH . E 3 HOH A 39 1066 1066 HOH HOH . E 3 HOH A 40 1070 1070 HOH HOH . E 3 HOH A 41 1071 1071 HOH HOH . E 3 HOH A 42 1073 1073 HOH HOH . E 3 HOH A 43 1075 1075 HOH HOH . E 3 HOH A 44 1082 1082 HOH HOH . E 3 HOH A 45 1083 1083 HOH HOH . E 3 HOH A 46 1084 1084 HOH HOH . E 3 HOH A 47 1089 1089 HOH HOH . E 3 HOH A 48 1091 1091 HOH HOH . E 3 HOH A 49 1093 1093 HOH HOH . E 3 HOH A 50 1094 1094 HOH HOH . E 3 HOH A 51 1098 1098 HOH HOH . E 3 HOH A 52 1104 1104 HOH HOH . E 3 HOH A 53 1107 1107 HOH HOH . E 3 HOH A 54 1113 1113 HOH HOH . E 3 HOH A 55 1115 1115 HOH HOH . E 3 HOH A 56 1116 1116 HOH HOH . E 3 HOH A 57 1117 1117 HOH HOH . E 3 HOH A 58 1118 1118 HOH HOH . E 3 HOH A 59 1119 1119 HOH HOH . E 3 HOH A 60 1121 1121 HOH HOH . E 3 HOH A 61 1122 1122 HOH HOH . E 3 HOH A 62 1123 1123 HOH HOH . E 3 HOH A 63 1124 1124 HOH HOH . E 3 HOH A 64 1128 1128 HOH HOH . E 3 HOH A 65 1129 1129 HOH HOH . E 3 HOH A 66 1130 1130 HOH HOH . E 3 HOH A 67 1132 1132 HOH HOH . E 3 HOH A 68 1134 1134 HOH HOH . E 3 HOH A 69 1137 1137 HOH HOH . E 3 HOH A 70 1139 1139 HOH HOH . E 3 HOH A 71 1140 1140 HOH HOH . E 3 HOH A 72 1144 1144 HOH HOH . E 3 HOH A 73 1147 1147 HOH HOH . E 3 HOH A 74 1152 1152 HOH HOH . E 3 HOH A 75 1153 1153 HOH HOH . E 3 HOH A 76 1155 1155 HOH HOH . E 3 HOH A 77 1156 1156 HOH HOH . E 3 HOH A 78 1160 1160 HOH HOH . E 3 HOH A 79 1162 1162 HOH HOH . E 3 HOH A 80 1163 1163 HOH HOH . E 3 HOH A 81 1164 1164 HOH HOH . E 3 HOH A 82 1166 1166 HOH HOH . E 3 HOH A 83 1170 1170 HOH HOH . E 3 HOH A 84 1172 1172 HOH HOH . E 3 HOH A 85 1176 1176 HOH HOH . E 3 HOH A 86 1178 1178 HOH HOH . E 3 HOH A 87 1179 1179 HOH HOH . E 3 HOH A 88 1180 1180 HOH HOH . E 3 HOH A 89 1183 1183 HOH HOH . E 3 HOH A 90 1187 1187 HOH HOH . E 3 HOH A 91 1188 1188 HOH HOH . E 3 HOH A 92 1190 1190 HOH HOH . F 3 HOH B 1 1001 1001 HOH HOH . F 3 HOH B 2 1005 1005 HOH HOH . F 3 HOH B 3 1008 1008 HOH HOH . F 3 HOH B 4 1010 1010 HOH HOH . F 3 HOH B 5 1015 1015 HOH HOH . F 3 HOH B 6 1021 1021 HOH HOH . F 3 HOH B 7 1023 1023 HOH HOH . F 3 HOH B 8 1024 1024 HOH HOH . F 3 HOH B 9 1025 1025 HOH HOH . F 3 HOH B 10 1029 1029 HOH HOH . F 3 HOH B 11 1032 1032 HOH HOH . F 3 HOH B 12 1033 1033 HOH HOH . F 3 HOH B 13 1036 1036 HOH HOH . F 3 HOH B 14 1038 1038 HOH HOH . F 3 HOH B 15 1039 1039 HOH HOH . F 3 HOH B 16 1041 1041 HOH HOH . F 3 HOH B 17 1042 1042 HOH HOH . F 3 HOH B 18 1043 1043 HOH HOH . F 3 HOH B 19 1044 1044 HOH HOH . F 3 HOH B 20 1046 1046 HOH HOH . F 3 HOH B 21 1047 1047 HOH HOH . F 3 HOH B 22 1050 1050 HOH HOH . F 3 HOH B 23 1053 1053 HOH HOH . F 3 HOH B 24 1054 1054 HOH HOH . F 3 HOH B 25 1059 1059 HOH HOH . F 3 HOH B 26 1060 1060 HOH HOH . F 3 HOH B 27 1062 1062 HOH HOH . F 3 HOH B 28 1067 1067 HOH HOH . F 3 HOH B 29 1068 1068 HOH HOH . F 3 HOH B 30 1069 1069 HOH HOH . F 3 HOH B 31 1072 1072 HOH HOH . F 3 HOH B 32 1074 1074 HOH HOH . F 3 HOH B 33 1076 1076 HOH HOH . F 3 HOH B 34 1077 1077 HOH HOH . F 3 HOH B 35 1078 1078 HOH HOH . F 3 HOH B 36 1079 1079 HOH HOH . F 3 HOH B 37 1080 1080 HOH HOH . F 3 HOH B 38 1081 1081 HOH HOH . F 3 HOH B 39 1085 1085 HOH HOH . F 3 HOH B 40 1086 1086 HOH HOH . F 3 HOH B 41 1087 1087 HOH HOH . F 3 HOH B 42 1088 1088 HOH HOH . F 3 HOH B 43 1090 1090 HOH HOH . F 3 HOH B 44 1092 1092 HOH HOH . F 3 HOH B 45 1095 1095 HOH HOH . F 3 HOH B 46 1096 1096 HOH HOH . F 3 HOH B 47 1097 1097 HOH HOH . F 3 HOH B 48 1099 1099 HOH HOH . F 3 HOH B 49 1101 1101 HOH HOH . F 3 HOH B 50 1102 1102 HOH HOH . F 3 HOH B 51 1103 1103 HOH HOH . F 3 HOH B 52 1105 1105 HOH HOH . F 3 HOH B 53 1106 1106 HOH HOH . F 3 HOH B 54 1109 1109 HOH HOH . F 3 HOH B 55 1110 1110 HOH HOH . F 3 HOH B 56 1111 1111 HOH HOH . F 3 HOH B 57 1112 1112 HOH HOH . F 3 HOH B 58 1114 1114 HOH HOH . F 3 HOH B 59 1120 1120 HOH HOH . F 3 HOH B 60 1125 1125 HOH HOH . F 3 HOH B 61 1126 1126 HOH HOH . F 3 HOH B 62 1127 1127 HOH HOH . F 3 HOH B 63 1131 1131 HOH HOH . F 3 HOH B 64 1133 1133 HOH HOH . F 3 HOH B 65 1135 1135 HOH HOH . F 3 HOH B 66 1136 1136 HOH HOH . F 3 HOH B 67 1138 1138 HOH HOH . F 3 HOH B 68 1141 1141 HOH HOH . F 3 HOH B 69 1142 1142 HOH HOH . F 3 HOH B 70 1143 1143 HOH HOH . F 3 HOH B 71 1145 1145 HOH HOH . F 3 HOH B 72 1146 1146 HOH HOH . F 3 HOH B 73 1148 1148 HOH HOH . F 3 HOH B 74 1149 1149 HOH HOH . F 3 HOH B 75 1150 1150 HOH HOH . F 3 HOH B 76 1151 1151 HOH HOH . F 3 HOH B 77 1154 1154 HOH HOH . F 3 HOH B 78 1157 1157 HOH HOH . F 3 HOH B 79 1158 1158 HOH HOH . F 3 HOH B 80 1159 1159 HOH HOH . F 3 HOH B 81 1167 1167 HOH HOH . F 3 HOH B 82 1168 1168 HOH HOH . F 3 HOH B 83 1169 1169 HOH HOH . F 3 HOH B 84 1171 1171 HOH HOH . F 3 HOH B 85 1173 1173 HOH HOH . F 3 HOH B 86 1174 1174 HOH HOH . F 3 HOH B 87 1175 1175 HOH HOH . F 3 HOH B 88 1181 1181 HOH HOH . F 3 HOH B 89 1182 1182 HOH HOH . F 3 HOH B 90 1184 1184 HOH HOH . F 3 HOH B 91 1185 1185 HOH HOH . F 3 HOH B 92 1186 1186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTG . . . D 2 34.473 33.65 36.478 1 49.23 ? C1 PTG 2 B 1 HETATM 2 C C2 PTG . . . D 2 35.518 34.709 36.754 1 51.71 ? C2 PTG 2 B 1 HETATM 3 C C3 PTG . . . D 2 35.018 36.141 36.619 1 53.85 ? C3 PTG 2 B 1 HETATM 4 C C4 PTG . . . D 2 34.444 36.793 37.875 1 55.33 ? C4 PTG 2 B 1 HETATM 5 C C5 PTG . . . D 2 35.497 37.611 38.61 1 56.71 ? C5 PTG 2 B 1 HETATM 6 C C6 PTG . . . D 2 36.267 36.729 39.553 1 58.74 ? C6 PTG 2 B 1 HETATM 7 C C7 PTG . . . D 2 36.863 37.092 40.653 1 60.7 ? C7 PTG 2 B 1 HETATM 8 C C8 PTG . . . D 2 36.921 38.486 41.255 1 62.1 ? C8 PTG 2 B 1 HETATM 9 C C10 PTG . . . D 2 37.549 38.845 42.378 1 62.63 ? C10 PTG 2 B 1 HETATM 10 C C11 PTG . . . D 2 37.511 40.214 42.828 1 62.75 ? C11 PTG 2 B 1 HETATM 11 O O12 PTG . . . D 2 36.865 41.184 42.239 1 64.53 ? O12 PTG 2 B 1 HETATM 12 C C13 PTG . . . D 2 38.302 40.27 44.01 1 63.11 ? C13 PTG 2 B 1 HETATM 13 C C14 PTG . . . D 2 38.784 39.07 44.28 1 61.98 ? C14 PTG 2 B 1 HETATM 14 C C15 PTG . . . D 2 38.362 38.038 43.289 1 61.9 ? C15 PTG 2 B 1 HETATM 15 C C16 PTG . . . D 2 39.636 37.407 42.816 1 61.28 ? C16 PTG 2 B 1 HETATM 16 C C17 PTG . . . D 2 40.261 36.208 43.619 1 60.77 ? C17 PTG 2 B 1 HETATM 17 C C18 PTG . . . D 2 39.896 34.953 43.391 1 60.29 ? C18 PTG 2 B 1 HETATM 18 C C19 PTG . . . D 2 38.859 34.46 42.364 1 58.78 ? C19 PTG 2 B 1 HETATM 19 C C20 PTG . . . D 2 38.788 32.917 42.267 1 57.62 ? C20 PTG 2 B 1 HETATM 20 C C21 PTG . . . D 2 37.336 32.501 42.01 1 57.17 ? C21 PTG 2 B 1 HETATM 21 C C22 PTG . . . D 2 37.04 31.089 41.596 1 57.91 ? C22 PTG 2 B 1 HETATM 22 O O23 PTG . . . D 2 38.034 30.361 41.369 1 57.5 ? O23 PTG 2 B 1 HETATM 23 O O24 PTG . . . D 2 35.841 30.659 41.486 1 59.73 ? O24 PTG 2 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #