data_2ZX4 # _model_server_result.job_id B3CuuCxaulheYZsYIERteQ _model_server_result.datetime_utc '2024-11-28 11:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":197}' # _entry.id 2ZX4 # _exptl.entry_id 2ZX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZX4 _cell.length_a 56.861 _cell.length_b 74.914 _cell.length_c 93.355 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLA GAL C1 O1 . O4 HO4 . sing 3 ? 3 2 1 GLA GAL C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC G 3 GLC 2 n C GAL 2 C 2 GAL G 2 GAL 2 n C GLA 3 C 3 GLA G 1 GAL 2 n D BGC 1 D 1 BGC I 3 GLC 2 n D GAL 2 D 2 GAL I 2 GAL 2 n D GLA 3 D 3 GLA I 1 GAL 3 n E GAL 1 E 1 GAL F 2 GAL 3 n E GLA 2 E 2 GLA F 1 GAL 3 n F GAL 1 F 1 GAL H 2 GAL 3 n F GLA 2 F 2 GLA H 1 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 35 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 15 A CYS 15 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 49 A CYS 49 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 A SG CYS 62 A CYS 62 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 62 A CYS 62 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 106 A CYS 106 1_555 A SG CYS 135 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 A SG CYS 115 A CYS 115 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 A SG CYS 149 A CYS 149 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf9 A SG CYS 162 A CYS 162 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 A SG CYS 162 A CYS 162 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 6 B CYS 6 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 B SG CYS 15 B CYS 15 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf13 B SG CYS 49 B CYS 49 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 62 B CYS 62 1_555 B SG CYS 68 B CYS 68 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 B SG CYS 62 B CYS 62 1_555 B SG CYS 68 B CYS 68 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 B SG CYS 106 B CYS 106 1_555 B SG CYS 135 B CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 B SG CYS 115 B CYS 115 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 B SG CYS 149 B CYS 149 1_555 B SG CYS 181 B CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf19 B SG CYS 162 B CYS 162 1_555 B SG CYS 168 B CYS 168 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.036 ? disulf ? disulf20 B SG CYS 162 B CYS 162 1_555 B SG CYS 168 B CYS 168 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C O4 BGC . C BGC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 C O4 GAL . C GAL 2 1_555 C C1 GLA . C GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 D O4 BGC . D BGC 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 D O4 GAL . D GAL 2 1_555 D C1 GLA . D GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 E O4 GAL . E GAL 1 1_555 E C1 GLA . E GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 F O4 GAL . F GAL 1 1_555 F C1 GLA . F GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 332 n n P O2 PO4 sing 333 n n P O3 PO4 sing 334 n n P O4 PO4 sing 335 n n # _atom_sites.entry_id 2ZX4 _atom_sites.fract_transf_matrix[1][1] 0.017587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PO4 B 1 196 5 PO4 PO4 . H 4 PO4 B 1 197 8 PO4 PO4 . I 5 HOH A 1 202 1 HOH HOH . I 5 HOH A 2 203 2 HOH HOH . I 5 HOH A 3 204 3 HOH HOH . I 5 HOH A 4 205 4 HOH HOH . I 5 HOH A 5 206 5 HOH HOH . I 5 HOH A 6 207 7 HOH HOH . I 5 HOH A 7 208 9 HOH HOH . I 5 HOH A 8 209 10 HOH HOH . I 5 HOH A 9 210 11 HOH HOH . I 5 HOH A 10 211 16 HOH HOH . I 5 HOH A 11 212 18 HOH HOH . I 5 HOH A 12 213 19 HOH HOH . I 5 HOH A 13 214 20 HOH HOH . I 5 HOH A 14 215 21 HOH HOH . I 5 HOH A 15 216 24 HOH HOH . I 5 HOH A 16 217 26 HOH HOH . I 5 HOH A 17 218 27 HOH HOH . I 5 HOH A 18 219 28 HOH HOH . I 5 HOH A 19 220 29 HOH HOH . I 5 HOH A 20 221 31 HOH HOH . J 5 HOH B 1 202 6 HOH HOH . J 5 HOH B 2 203 8 HOH HOH . J 5 HOH B 3 204 12 HOH HOH . J 5 HOH B 4 205 13 HOH HOH . J 5 HOH B 5 206 14 HOH HOH . J 5 HOH B 6 207 15 HOH HOH . J 5 HOH B 7 208 17 HOH HOH . J 5 HOH B 8 209 22 HOH HOH . J 5 HOH B 9 210 23 HOH HOH . J 5 HOH B 10 211 25 HOH HOH . J 5 HOH B 11 212 30 HOH HOH . J 5 HOH B 12 213 32 HOH HOH . J 5 HOH B 13 214 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 4 -4.324 -18.985 42.578 1 34.04 ? P PO4 197 B 1 HETATM 2 O O1 PO4 . . . H 4 -4.015 -18.405 41.21 1 35.23 ? O1 PO4 197 B 1 HETATM 3 O O2 PO4 . . . H 4 -3.704 -20.366 42.66 1 33.07 ? O2 PO4 197 B 1 HETATM 4 O O3 PO4 . . . H 4 -5.829 -19.041 42.694 1 32.78 ? O3 PO4 197 B 1 HETATM 5 O O4 PO4 . . . H 4 -3.761 -18.097 43.67 1 32.82 ? O4 PO4 197 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 5 #