data_2ZXE # _model_server_result.job_id QLyoK0U8dqerBPKPua43zg _model_server_result.datetime_utc '2024-11-21 14:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2002}' # _entry.id 2ZXE # _exptl.entry_id 2ZXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.12 _cell.angle_gamma 90 _cell.entry_id 2ZXE _cell.length_a 223.815 _cell.length_b 50.914 _cell.length_c 163.786 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NDG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG B 4001 NAG 4 n D NDG 2 C 2 NDG B 4002 NDG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 160 B CYS 160 1_555 B SG CYS 176 B CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 215 B CYS 215 1_555 B SG CYS 278 B CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 114 B ASN 114 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B ND2 ASN 159 B ASN 159 1_555 K C1 NAG . B NAG 4021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 D O4 NAG . C NAG 1 1_555 D C1 NDG . C NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A O VAL 334 A VAL 329 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc2 A O ALA 335 A ALA 330 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc3 A O VAL 337 A VAL 332 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc4 A OD1 ASP 381 A ASP 376 1_555 F MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 A O THR 383 A THR 378 1_555 F MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 A OD2 ASP 722 A ASP 717 1_555 F MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc7 A O LEU 730 A LEU 725 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc8 A O LYS 731 A LYS 726 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc9 A O ALA 733 A ALA 728 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc10 A OD1 ASP 752 A ASP 747 1_555 I K K . A K 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc11 A O THR 784 A THR 779 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc12 A OG SER 787 A SER 782 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc13 A OD1 ASN 788 A ASN 783 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc14 A OE2 GLU 791 A GLU 786 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc15 A OD2 ASP 816 A ASP 811 1_555 G K K . A K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc16 A OD2 ASP 816 A ASP 811 1_555 H K K . A K 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc17 F MG MG . A MG 2002 1_555 L O HOH . A HOH 5055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc18 F MG MG . A MG 2002 1_555 L O HOH . A HOH 5058 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc19 G K K . A K 2003 1_555 L O HOH . A HOH 5010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZXE _atom_sites.fract_transf_matrix[1][1] 0.004468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001207 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MF4 A 1 2001 2001 MF4 MF4 . F 6 MG A 1 2002 2002 MG MG . G 7 K A 1 2003 2003 K K . H 7 K A 1 2004 2004 K K . I 7 K A 1 2005 2005 K K . J 8 CLR A 1 3001 3001 CLR CLR . K 9 NAG B 1 4021 4021 NAG NAG . L 10 HOH A 1 5001 5001 HOH HOH . L 10 HOH A 2 5002 5002 HOH HOH . L 10 HOH A 3 5003 5003 HOH HOH . L 10 HOH A 4 5004 5004 HOH HOH . L 10 HOH A 5 5005 5005 HOH HOH . L 10 HOH A 6 5006 5006 HOH HOH . L 10 HOH A 7 5007 5007 HOH HOH . L 10 HOH A 8 5008 5008 HOH HOH . L 10 HOH A 9 5009 5009 HOH HOH . L 10 HOH A 10 5010 5010 HOH HOH . L 10 HOH A 11 5011 5011 HOH HOH . L 10 HOH A 12 5012 5012 HOH HOH . L 10 HOH A 13 5013 5013 HOH HOH . L 10 HOH A 14 5014 5014 HOH HOH . L 10 HOH A 15 5015 5015 HOH HOH . L 10 HOH A 16 5016 5016 HOH HOH . L 10 HOH A 17 5017 5017 HOH HOH . L 10 HOH A 18 5018 5018 HOH HOH . L 10 HOH A 19 5019 5019 HOH HOH . L 10 HOH A 20 5020 5020 HOH HOH . L 10 HOH A 21 5021 5021 HOH HOH . L 10 HOH A 22 5022 5022 HOH HOH . L 10 HOH A 23 5023 5023 HOH HOH . L 10 HOH A 24 5024 5024 HOH HOH . L 10 HOH A 25 5025 5025 HOH HOH . L 10 HOH A 26 5026 5026 HOH HOH . L 10 HOH A 27 5027 5027 HOH HOH . L 10 HOH A 28 5028 5028 HOH HOH . L 10 HOH A 29 5029 5029 HOH HOH . L 10 HOH A 30 5030 5030 HOH HOH . L 10 HOH A 31 5031 5031 HOH HOH . L 10 HOH A 32 5032 5032 HOH HOH . L 10 HOH A 33 5033 5033 HOH HOH . L 10 HOH A 34 5034 5034 HOH HOH . L 10 HOH A 35 5035 5035 HOH HOH . L 10 HOH A 36 5036 5036 HOH HOH . L 10 HOH A 37 5037 5037 HOH HOH . L 10 HOH A 38 5038 5038 HOH HOH . L 10 HOH A 39 5039 5039 HOH HOH . L 10 HOH A 40 5040 5040 HOH HOH . L 10 HOH A 41 5041 5041 HOH HOH . L 10 HOH A 42 5042 5042 HOH HOH . L 10 HOH A 43 5043 5043 HOH HOH . L 10 HOH A 44 5044 5044 HOH HOH . L 10 HOH A 45 5045 5045 HOH HOH . L 10 HOH A 46 5046 5046 HOH HOH . L 10 HOH A 47 5047 5047 HOH HOH . L 10 HOH A 48 5048 5048 HOH HOH . L 10 HOH A 49 5049 5049 HOH HOH . L 10 HOH A 50 5050 5050 HOH HOH . L 10 HOH A 51 5051 5051 HOH HOH . L 10 HOH A 52 5052 5052 HOH HOH . L 10 HOH A 53 5053 5053 HOH HOH . L 10 HOH A 54 5054 5054 HOH HOH . L 10 HOH A 55 5055 5055 HOH HOH . L 10 HOH A 56 5056 5056 HOH HOH . L 10 HOH A 57 5057 5057 HOH HOH . L 10 HOH A 58 5058 5058 HOH HOH . L 10 HOH A 59 5059 5059 HOH HOH . L 10 HOH A 60 5060 5060 HOH HOH . L 10 HOH A 61 5061 5061 HOH HOH . L 10 HOH A 62 5062 5062 HOH HOH . L 10 HOH A 63 5063 5063 HOH HOH . L 10 HOH A 64 5064 5064 HOH HOH . L 10 HOH A 65 5065 5065 HOH HOH . L 10 HOH A 66 5066 5066 HOH HOH . L 10 HOH A 67 5067 5067 HOH HOH . L 10 HOH A 68 5068 5068 HOH HOH . L 10 HOH A 69 5069 5069 HOH HOH . L 10 HOH A 70 5070 5070 HOH HOH . L 10 HOH A 71 5071 5071 HOH HOH . L 10 HOH A 72 5072 5072 HOH HOH . L 10 HOH A 73 5073 5073 HOH HOH . L 10 HOH A 74 5074 5074 HOH HOH . L 10 HOH A 75 5075 5075 HOH HOH . L 10 HOH A 76 5076 5076 HOH HOH . L 10 HOH A 77 5077 5077 HOH HOH . L 10 HOH A 78 5078 5078 HOH HOH . L 10 HOH A 79 5079 5079 HOH HOH . L 10 HOH A 80 5080 5080 HOH HOH . L 10 HOH A 81 5081 5081 HOH HOH . L 10 HOH A 82 5082 5082 HOH HOH . L 10 HOH A 83 5083 5083 HOH HOH . L 10 HOH A 84 5084 5084 HOH HOH . L 10 HOH A 85 5085 5085 HOH HOH . L 10 HOH A 86 5086 5086 HOH HOH . L 10 HOH A 87 5087 5087 HOH HOH . L 10 HOH A 88 5088 5088 HOH HOH . L 10 HOH A 89 5089 5089 HOH HOH . L 10 HOH A 90 5090 5090 HOH HOH . L 10 HOH A 91 5091 5091 HOH HOH . L 10 HOH A 92 5092 5092 HOH HOH . L 10 HOH A 93 5093 5093 HOH HOH . L 10 HOH A 94 5094 5094 HOH HOH . L 10 HOH A 95 5095 5095 HOH HOH . L 10 HOH A 96 5096 5096 HOH HOH . L 10 HOH A 97 5097 5097 HOH HOH . L 10 HOH A 98 5098 5098 HOH HOH . L 10 HOH A 99 5099 5099 HOH HOH . L 10 HOH A 100 5100 5100 HOH HOH . L 10 HOH A 101 5101 5101 HOH HOH . L 10 HOH A 102 5102 5102 HOH HOH . L 10 HOH A 103 5103 5103 HOH HOH . L 10 HOH A 104 5104 5104 HOH HOH . L 10 HOH A 105 5105 5105 HOH HOH . L 10 HOH A 106 5106 5106 HOH HOH . L 10 HOH A 107 5107 5107 HOH HOH . L 10 HOH A 108 5108 5108 HOH HOH . L 10 HOH A 109 5109 5109 HOH HOH . L 10 HOH A 110 5110 5110 HOH HOH . L 10 HOH A 111 5111 5111 HOH HOH . L 10 HOH A 112 5112 5112 HOH HOH . L 10 HOH A 113 5113 5113 HOH HOH . L 10 HOH A 114 5114 5114 HOH HOH . L 10 HOH A 115 5115 5115 HOH HOH . L 10 HOH A 116 5116 5116 HOH HOH . L 10 HOH A 117 5117 5117 HOH HOH . L 10 HOH A 118 5118 5118 HOH HOH . L 10 HOH A 119 5119 5119 HOH HOH . L 10 HOH A 120 5120 5120 HOH HOH . L 10 HOH A 121 5121 5121 HOH HOH . L 10 HOH A 122 5122 5122 HOH HOH . L 10 HOH A 123 5123 5123 HOH HOH . L 10 HOH A 124 5124 5124 HOH HOH . L 10 HOH A 125 5125 5125 HOH HOH . L 10 HOH A 126 5126 5126 HOH HOH . L 10 HOH A 127 5127 5127 HOH HOH . L 10 HOH A 128 5128 5128 HOH HOH . L 10 HOH A 129 5129 5129 HOH HOH . L 10 HOH A 130 5130 5130 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 131.467 _atom_site.Cartn_y 30.543 _atom_site.Cartn_z 56.891 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #