data_2ZXF # _model_server_result.job_id 1_PE7noEjs2HDfRiYzAbbA _model_server_result.datetime_utc '2024-11-21 17:59:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 2ZXF # _exptl.entry_id 2ZXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 836.387 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZXF _cell.length_a 121.299 _cell.length_b 137.03 _cell.length_c 132.751 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 132.751 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 N10 O19 P4' _chem_comp.formula_weight 836.387 _chem_comp.id B4P _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A B4P doub 70 n n PA O2A B4P sing 71 n n PA O3A B4P sing 72 n n PA O5E B4P sing 73 n n O2A HOA2 B4P sing 74 n n O3A PB B4P sing 75 n n PB O1B B4P doub 76 n n PB O2B B4P sing 77 n n PB O3B B4P sing 78 n n O2B HOB2 B4P sing 79 n n O3B PG B4P sing 80 n n PG O1G B4P doub 81 n n PG O2G B4P sing 82 n n PG O3G B4P sing 83 n n O2G HOG2 B4P sing 84 n n O3G PD B4P sing 85 n n PD O1D B4P doub 86 n n PD O2D B4P sing 87 n n PD O5F B4P sing 88 n n O2D HOD2 B4P sing 89 n n O5E C5E B4P sing 90 n n C5E C4E B4P sing 91 n n C5E H51A B4P sing 92 n n C5E H52A B4P sing 93 n n C4E O4E B4P sing 94 n n C4E C3E B4P sing 95 n n C4E H4E B4P sing 96 n n O4E C1E B4P sing 97 n n C3E O3E B4P sing 98 n n C3E C2E B4P sing 99 n n C3E H3E B4P sing 100 n n O3E HO3A B4P sing 101 n n C2E O2E B4P sing 102 n n C2E C1E B4P sing 103 n n C2E H2E B4P sing 104 n n O2E HO2A B4P sing 105 n n C1E N9A B4P sing 106 n n C1E H1E B4P sing 107 n n N9A C8A B4P sing 108 n y N9A C4A B4P sing 109 n y C8A N7A B4P doub 110 n y C8A H8A B4P sing 111 n n N7A C5A B4P sing 112 n y C5A C6A B4P sing 113 n y C5A C4A B4P doub 114 n y C6A N6A B4P sing 115 n n C6A N1A B4P doub 116 n y N6A H61A B4P sing 117 n n N6A H62A B4P sing 118 n n N1A C2A B4P sing 119 n y C2A N3A B4P doub 120 n y C2A H2A B4P sing 121 n n N3A C4A B4P sing 122 n y O5F C5F B4P sing 123 n n C5F C4F B4P sing 124 n n C5F H51B B4P sing 125 n n C5F H52B B4P sing 126 n n C4F O4F B4P sing 127 n n C4F C3F B4P sing 128 n n C4F H4F B4P sing 129 n n O4F C1F B4P sing 130 n n C3F O3F B4P sing 131 n n C3F C2F B4P sing 132 n n C3F H3F B4P sing 133 n n O3F HO3B B4P sing 134 n n C2F O2F B4P sing 135 n n C2F C1F B4P sing 136 n n C2F H2F B4P sing 137 n n O2F HO2B B4P sing 138 n n C1F N9B B4P sing 139 n n C1F H1F B4P sing 140 n n N9B C8B B4P sing 141 n y N9B C4B B4P sing 142 n y C8B N7B B4P doub 143 n y C8B H8B B4P sing 144 n n N7B C5B B4P sing 145 n y C5B C6B B4P sing 146 n y C5B C4B B4P doub 147 n y C6B N6B B4P sing 148 n n C6B N1B B4P doub 149 n y N6B H61B B4P sing 150 n n N6B H62B B4P sing 151 n n N1B C2B B4P sing 152 n y C2B N3B B4P doub 153 n y C2B H2B B4P sing 154 n n N3B C4B B4P sing 155 n y # _atom_sites.entry_id 2ZXF _atom_sites.fract_transf_matrix[1][1] 0.008244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B4P A 1 1101 1101 B4P DRG . C 3 HOH A 1 701 701 HOH WAT . C 3 HOH A 2 702 702 HOH WAT . C 3 HOH A 3 703 703 HOH WAT . C 3 HOH A 4 704 704 HOH WAT . C 3 HOH A 5 705 705 HOH WAT . C 3 HOH A 6 706 706 HOH WAT . C 3 HOH A 7 707 707 HOH WAT . C 3 HOH A 8 708 708 HOH WAT . C 3 HOH A 9 709 709 HOH WAT . C 3 HOH A 10 710 710 HOH WAT . C 3 HOH A 11 711 711 HOH WAT . C 3 HOH A 12 712 712 HOH WAT . C 3 HOH A 13 713 713 HOH WAT . C 3 HOH A 14 714 714 HOH WAT . C 3 HOH A 15 715 715 HOH WAT . C 3 HOH A 16 716 716 HOH WAT . C 3 HOH A 17 717 717 HOH WAT . C 3 HOH A 18 718 718 HOH WAT . C 3 HOH A 19 719 719 HOH WAT . C 3 HOH A 20 720 720 HOH WAT . C 3 HOH A 21 721 721 HOH WAT . C 3 HOH A 22 722 722 HOH WAT . C 3 HOH A 23 723 723 HOH WAT . C 3 HOH A 24 724 724 HOH WAT . C 3 HOH A 25 725 725 HOH WAT . C 3 HOH A 26 726 726 HOH WAT . C 3 HOH A 27 727 727 HOH WAT . C 3 HOH A 28 728 728 HOH WAT . C 3 HOH A 29 729 729 HOH WAT . C 3 HOH A 30 730 730 HOH WAT . C 3 HOH A 31 731 731 HOH WAT . C 3 HOH A 32 732 732 HOH WAT . C 3 HOH A 33 733 733 HOH WAT . C 3 HOH A 34 734 734 HOH WAT . C 3 HOH A 35 735 735 HOH WAT . C 3 HOH A 36 736 736 HOH WAT . C 3 HOH A 37 737 737 HOH WAT . C 3 HOH A 38 738 738 HOH WAT . C 3 HOH A 39 739 739 HOH WAT . C 3 HOH A 40 740 740 HOH WAT . C 3 HOH A 41 741 741 HOH WAT . C 3 HOH A 42 742 742 HOH WAT . C 3 HOH A 43 743 743 HOH WAT . C 3 HOH A 44 744 744 HOH WAT . C 3 HOH A 45 745 745 HOH WAT . C 3 HOH A 46 746 746 HOH WAT . C 3 HOH A 47 747 747 HOH WAT . C 3 HOH A 48 748 748 HOH WAT . C 3 HOH A 49 749 749 HOH WAT . C 3 HOH A 50 750 750 HOH WAT . C 3 HOH A 51 751 751 HOH WAT . C 3 HOH A 52 752 752 HOH WAT . C 3 HOH A 53 753 753 HOH WAT . C 3 HOH A 54 754 754 HOH WAT . C 3 HOH A 55 755 755 HOH WAT . C 3 HOH A 56 756 756 HOH WAT . C 3 HOH A 57 757 757 HOH WAT . C 3 HOH A 58 758 758 HOH WAT . C 3 HOH A 59 759 759 HOH WAT . C 3 HOH A 60 761 761 HOH WAT . C 3 HOH A 61 762 762 HOH WAT . C 3 HOH A 62 763 763 HOH WAT . C 3 HOH A 63 764 764 HOH WAT . C 3 HOH A 64 765 765 HOH WAT . C 3 HOH A 65 766 766 HOH WAT . C 3 HOH A 66 767 767 HOH WAT . C 3 HOH A 67 768 768 HOH WAT . C 3 HOH A 68 769 769 HOH WAT . C 3 HOH A 69 774 774 HOH WAT . C 3 HOH A 70 776 776 HOH WAT . C 3 HOH A 71 777 777 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA B4P . . . B 2 33.631 -16.022 73.678 1 200 ? PA B4P 1101 A 1 HETATM 2 O O1A B4P . . . B 2 32.795 -14.647 73.639 1 199.85 ? O1A B4P 1101 A 1 HETATM 3 O O2A B4P . . . B 2 34.652 -16.075 72.607 1 200 ? O2A B4P 1101 A 1 HETATM 4 O O3A B4P . . . B 2 32.541 -17.2 73.521 1 200 ? O3A B4P 1101 A 1 HETATM 5 P PB B4P . . . B 2 31.731 -17.9 74.727 1 200 ? PB B4P 1101 A 1 HETATM 6 O O1B B4P . . . B 2 31.057 -19.195 74.049 1 197.56 ? O1B B4P 1101 A 1 HETATM 7 O O2B B4P . . . B 2 32.576 -18.255 75.89 1 199.91 ? O2B B4P 1101 A 1 HETATM 8 O O3B B4P . . . B 2 30.484 -16.947 75.095 1 199.95 ? O3B B4P 1101 A 1 HETATM 9 P PG B4P . . . B 2 30.307 -16.219 76.523 1 199.28 ? PG B4P 1101 A 1 HETATM 10 O O1G B4P . . . B 2 31.769 -15.707 76.963 1 199.96 ? O1G B4P 1101 A 1 HETATM 11 O O2G B4P . . . B 2 29.713 -17.111 77.543 1 197.49 ? O2G B4P 1101 A 1 HETATM 12 O O3G B4P . . . B 2 29.421 -14.905 76.226 1 196.56 ? O3G B4P 1101 A 1 HETATM 13 P PD B4P . . . B 2 29.351 -13.665 77.252 1 194.35 ? PD B4P 1101 A 1 HETATM 14 O O1D B4P . . . B 2 30.721 -12.842 77.054 1 193.49 ? O1D B4P 1101 A 1 HETATM 15 O O2D B4P . . . B 2 29.169 -14.099 78.655 1 195.8 ? O2D B4P 1101 A 1 HETATM 16 O O5E B4P . . . B 2 34.286 -16.095 75.148 1 200 ? O5E B4P 1101 A 1 HETATM 17 C C5E B4P . . . B 2 35.171 -17.153 75.531 1 200 ? C5E B4P 1101 A 1 HETATM 18 C C4E B4P . . . B 2 35.858 -16.822 76.859 1 200 ? C4E B4P 1101 A 1 HETATM 19 O O4E B4P . . . B 2 36.393 -17.982 77.526 1 200 ? O4E B4P 1101 A 1 HETATM 20 C C3E B4P . . . B 2 34.852 -16.163 77.805 1 199.91 ? C3E B4P 1101 A 1 HETATM 21 O O3E B4P . . . B 2 35.026 -14.744 77.761 1 199.07 ? O3E B4P 1101 A 1 HETATM 22 C C2E B4P . . . B 2 35.341 -16.69 79.151 1 200 ? C2E B4P 1101 A 1 HETATM 23 O O2E B4P . . . B 2 34.286 -16.68 80.117 1 200 ? O2E B4P 1101 A 1 HETATM 24 C C1E B4P . . . B 2 35.643 -18.131 78.744 1 200 ? C1E B4P 1101 A 1 HETATM 25 N N9A B4P . . . B 2 36.331 -18.9 79.806 1 200 ? N9A B4P 1101 A 1 HETATM 26 C C8A B4P . . . B 2 36.122 -20.183 80.092 1 200 ? C8A B4P 1101 A 1 HETATM 27 N N7A B4P . . . B 2 36.849 -20.533 81.15 1 200 ? N7A B4P 1101 A 1 HETATM 28 C C5A B4P . . . B 2 37.534 -19.464 81.545 1 200 ? C5A B4P 1101 A 1 HETATM 29 C C6A B4P . . . B 2 38.434 -19.218 82.574 1 199.96 ? C6A B4P 1101 A 1 HETATM 30 N N6A B4P . . . B 2 38.772 -20.185 83.423 1 198.89 ? N6A B4P 1101 A 1 HETATM 31 N N1A B4P . . . B 2 38.954 -17.989 82.7 1 199.96 ? N1A B4P 1101 A 1 HETATM 32 C C2A B4P . . . B 2 38.622 -17.021 81.864 1 199.98 ? C2A B4P 1101 A 1 HETATM 33 N N3A B4P . . . B 2 37.769 -17.22 80.875 1 200 ? N3A B4P 1101 A 1 HETATM 34 C C4A B4P . . . B 2 37.207 -18.423 80.687 1 200 ? C4A B4P 1101 A 1 HETATM 35 O O5F B4P . . . B 2 28.177 -12.687 76.741 1 190.37 ? O5F B4P 1101 A 1 HETATM 36 C C5F B4P . . . B 2 26.916 -13.214 76.32 1 184.2 ? C5F B4P 1101 A 1 HETATM 37 C C4F B4P . . . B 2 27.047 -13.861 74.941 1 179.79 ? C4F B4P 1101 A 1 HETATM 38 O O4F B4P . . . B 2 27.333 -12.885 73.929 1 177.86 ? O4F B4P 1101 A 1 HETATM 39 C C3F B4P . . . B 2 25.767 -14.489 74.395 1 177.75 ? C3F B4P 1101 A 1 HETATM 40 O O3F B4P . . . B 2 25.455 -15.672 75.136 1 176.83 ? O3F B4P 1101 A 1 HETATM 41 C C2F B4P . . . B 2 26.29 -14.816 72.999 1 177.16 ? C2F B4P 1101 A 1 HETATM 42 O O2F B4P . . . B 2 25.188 -14.964 72.099 1 178.24 ? O2F B4P 1101 A 1 HETATM 43 C C1F B4P . . . B 2 27.051 -13.527 72.672 1 177.4 ? C1F B4P 1101 A 1 HETATM 44 N N9B B4P . . . B 2 28.322 -13.837 71.981 1 177.36 ? N9B B4P 1101 A 1 HETATM 45 C C8B B4P . . . B 2 29.511 -13.947 72.57 1 177.69 ? C8B B4P 1101 A 1 HETATM 46 N N7B B4P . . . B 2 30.444 -14.191 71.653 1 177.78 ? N7B B4P 1101 A 1 HETATM 47 C C5B B4P . . . B 2 29.844 -14.239 70.467 1 177.48 ? C5B B4P 1101 A 1 HETATM 48 C C6B B4P . . . B 2 30.289 -14.452 69.169 1 176.8 ? C6B B4P 1101 A 1 HETATM 49 N N6B B4P . . . B 2 31.579 -14.661 68.922 1 176.72 ? N6B B4P 1101 A 1 HETATM 50 N N1B B4P . . . B 2 29.397 -14.436 68.168 1 176.88 ? N1B B4P 1101 A 1 HETATM 51 C C2B B4P . . . B 2 28.114 -14.222 68.404 1 177.38 ? C2B B4P 1101 A 1 HETATM 52 N N3B B4P . . . B 2 27.656 -14.015 69.625 1 177.22 ? N3B B4P 1101 A 1 HETATM 53 C C4B B4P . . . B 2 28.49 -14.017 70.674 1 177.44 ? C4B B4P 1101 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #