data_2ZXK
#
_model_server_result.job_id            sTiT4h4cH4ItYln9yIZSzw 
_model_server_result.datetime_utc      '2024-11-16 10:41:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zxk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    2ZXK 
#
_exptl.entry_id    2ZXK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2ZXK 
_cell.length_a            53.978 
_cell.length_b            83.539 
_cell.length_c            120.404 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZXK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 18 A PHE 52 1_555 A N MSE 19 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 19 A MSE 53 1_555 A N GLU 20 A GLU 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C LEU 31 A LEU 65 1_555 A N MSE 32 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C MSE 32 A MSE 66 1_555 A N VAL 33 A VAL 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale5 A C LEU 35 A LEU 69 1_555 A N MSE 36 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 A C MSE 36 A MSE 70 1_555 A N SER 37 A SER 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale7 A C SER 189 A SER 223 1_555 A N MSE 190 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 190 A MSE 224 1_555 A N LEU 191 A LEU 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale9 A C ARG 239 A ARG 273 1_555 A N MSE 240 A MSE 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C MSE 240 A MSE 274 1_555 A N GLU 241 A GLU 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale11 A C ARG 264 A ARG 298 1_555 A N MSE 265 A MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 A C MSE 265 A MSE 299 1_555 A N PHE 266 A PHE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 B C PHE 18 B PHE 52 1_555 B N MSE 19 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 B C MSE 19 B MSE 53 1_555 B N GLU 20 B GLU 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale15 B C LEU 31 B LEU 65 1_555 B N MSE 32 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale16 B C MSE 32 B MSE 66 1_555 B N VAL 33 B VAL 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale17 B C LEU 35 B LEU 69 1_555 B N MSE 36 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 B C MSE 36 B MSE 70 1_555 B N SER 37 B SER 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale19 B C SER 189 B SER 223 1_555 B N MSE 190 B MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 B C MSE 190 B MSE 224 1_555 B N LEU 191 B LEU 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale21 B C ARG 239 B ARG 273 1_555 B N MSE 240 B MSE 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale22 B C MSE 240 B MSE 274 1_555 B N GLU 241 B GLU 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale23 B C ARG 264 B ARG 298 1_555 B N MSE 265 B MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale24 B C MSE 265 B MSE 299 1_555 B N PHE 266 B PHE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 C NA NA . A NA 1 1_555 A O LEU 165 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc2 C NA NA . A NA 1 1_555 A O LEU 167 A LEU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc3 C NA NA . A NA 1 1_555 A O VAL 170 A VAL 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 C NA NA . A NA 1 1_555 E O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc5 D NA NA . B NA 2 1_555 B O LEU 165 B LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc6 D NA NA . B NA 2 1_555 B O LEU 167 B LEU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc7 D NA NA . B NA 2 1_555 B O VAL 170 B VAL 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc8 D NA NA . B NA 2 1_555 F O HOH . B HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2ZXK 
_atom_sites.fract_transf_matrix[1][1]    0.018526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 1 1 NA NA . 
D 2 NA B 1 2 2 NA NA . 
E 3 HOH A 1 3 3 HOH HOH . 
E 3 HOH A 2 4 4 HOH HOH . 
E 3 HOH A 3 5 5 HOH HOH . 
E 3 HOH A 4 6 6 HOH HOH . 
E 3 HOH A 5 8 8 HOH HOH . 
E 3 HOH A 6 9 9 HOH HOH . 
E 3 HOH A 7 10 10 HOH HOH . 
E 3 HOH A 8 11 11 HOH HOH . 
E 3 HOH A 9 12 12 HOH HOH . 
E 3 HOH A 10 13 13 HOH HOH . 
E 3 HOH A 11 14 14 HOH HOH . 
E 3 HOH A 12 15 15 HOH HOH . 
E 3 HOH A 13 16 16 HOH HOH . 
E 3 HOH A 14 17 17 HOH HOH . 
E 3 HOH A 15 18 18 HOH HOH . 
E 3 HOH A 16 19 19 HOH HOH . 
E 3 HOH A 17 21 21 HOH HOH . 
E 3 HOH A 18 22 22 HOH HOH . 
E 3 HOH A 19 23 23 HOH HOH . 
E 3 HOH A 20 24 24 HOH HOH . 
E 3 HOH A 21 25 25 HOH HOH . 
E 3 HOH A 22 26 26 HOH HOH . 
E 3 HOH A 23 27 27 HOH HOH . 
E 3 HOH A 24 320 35 HOH HOH . 
E 3 HOH A 25 321 39 HOH HOH . 
E 3 HOH A 26 322 41 HOH HOH . 
E 3 HOH A 27 323 42 HOH HOH . 
E 3 HOH A 28 324 43 HOH HOH . 
E 3 HOH A 29 325 44 HOH HOH . 
E 3 HOH A 30 326 45 HOH HOH . 
E 3 HOH A 31 327 46 HOH HOH . 
E 3 HOH A 32 328 47 HOH HOH . 
E 3 HOH A 33 329 48 HOH HOH . 
F 3 HOH B 1 20 20 HOH HOH . 
F 3 HOH B 2 28 28 HOH HOH . 
F 3 HOH B 3 29 29 HOH HOH . 
F 3 HOH B 4 30 30 HOH HOH . 
F 3 HOH B 5 31 31 HOH HOH . 
F 3 HOH B 6 32 32 HOH HOH . 
F 3 HOH B 7 33 33 HOH HOH . 
F 3 HOH B 8 34 34 HOH HOH . 
F 3 HOH B 9 320 36 HOH HOH . 
F 3 HOH B 10 321 37 HOH HOH . 
F 3 HOH B 11 322 38 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               46.261 
_atom_site.Cartn_y               46.537 
_atom_site.Cartn_z               51.99 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           2 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#