data_2ZXY # _model_server_result.job_id oR4G4OfLxLHfuH5J9F3y1Q _model_server_result.datetime_utc '2025-03-13 17:10:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 2ZXY # _exptl.entry_id 2ZXY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.05 _cell.angle_gamma 90 _cell.entry_id 2ZXY _cell.length_a 48.529 _cell.length_b 32.993 _cell.length_c 49.668 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 48.529 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 16 A HIS 16 1_555 B FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 A SD MET 61 A MET 61 1_555 B FE HEC . A HEC 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 103 n n FE NB HEC sing 104 n n FE NC HEC sing 105 n n FE ND HEC sing 106 n n CHA C1A HEC doub 107 n n CHA C4D HEC sing 108 n n CHA HHA HEC sing 109 n n CHB C4A HEC doub 110 n n CHB C1B HEC sing 111 n n CHB HHB HEC sing 112 n n CHC C4B HEC doub 113 n n CHC C1C HEC sing 114 n n CHC HHC HEC sing 115 n n CHD C4C HEC doub 116 n n CHD C1D HEC sing 117 n n CHD HHD HEC sing 118 n n NA C1A HEC sing 119 n y NA C4A HEC sing 120 n y C1A C2A HEC sing 121 n y C2A C3A HEC doub 122 n y C2A CAA HEC sing 123 n n C3A C4A HEC sing 124 n y C3A CMA HEC sing 125 n n CMA HMA1 HEC sing 126 n n CMA HMA2 HEC sing 127 n n CMA HMA3 HEC sing 128 n n CAA CBA HEC sing 129 n n CAA HAA1 HEC sing 130 n n CAA HAA2 HEC sing 131 n n CBA CGA HEC sing 132 n n CBA HBA1 HEC sing 133 n n CBA HBA2 HEC sing 134 n n CGA O1A HEC doub 135 n n CGA O2A HEC sing 136 n n O2A H2A HEC sing 137 n n NB C1B HEC sing 138 n y NB C4B HEC sing 139 n y C1B C2B HEC doub 140 n y C2B C3B HEC sing 141 n y C2B CMB HEC sing 142 n n C3B C4B HEC sing 143 n y C3B CAB HEC doub 144 e n CMB HMB1 HEC sing 145 n n CMB HMB2 HEC sing 146 n n CMB HMB3 HEC sing 147 n n CAB CBB HEC sing 148 n n CAB HAB HEC sing 149 n n CBB HBB1 HEC sing 150 n n CBB HBB2 HEC sing 151 n n CBB HBB3 HEC sing 152 n n NC C1C HEC sing 153 n y NC C4C HEC sing 154 n y C1C C2C HEC doub 155 n y C2C C3C HEC sing 156 n y C2C CMC HEC sing 157 n n C3C C4C HEC sing 158 n y C3C CAC HEC doub 159 e n CMC HMC1 HEC sing 160 n n CMC HMC2 HEC sing 161 n n CMC HMC3 HEC sing 162 n n CAC CBC HEC sing 163 n n CAC HAC HEC sing 164 n n CBC HBC1 HEC sing 165 n n CBC HBC2 HEC sing 166 n n CBC HBC3 HEC sing 167 n n ND C1D HEC sing 168 n y ND C4D HEC sing 169 n y C1D C2D HEC doub 170 n y C2D C3D HEC sing 171 n y C2D CMD HEC sing 172 n n C3D C4D HEC doub 173 n y C3D CAD HEC sing 174 n n CMD HMD1 HEC sing 175 n n CMD HMD2 HEC sing 176 n n CMD HMD3 HEC sing 177 n n CAD CBD HEC sing 178 n n CAD HAD1 HEC sing 179 n n CAD HAD2 HEC sing 180 n n CBD CGD HEC sing 181 n n CBD HBD1 HEC sing 182 n n CBD HBD2 HEC sing 183 n n CGD O1D HEC doub 184 n n CGD O2D HEC sing 185 n n O2D H2D HEC sing 186 n n # _atom_sites.entry_id 2ZXY _atom_sites.fract_transf_matrix[1][1] 0.020606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 200 200 HEC HEC . C 3 HOH A 1 88 88 HOH HOH . C 3 HOH A 2 89 1 HOH HOH . C 3 HOH A 3 90 90 HOH HOH . C 3 HOH A 4 91 91 HOH HOH . C 3 HOH A 5 92 92 HOH HOH . C 3 HOH A 6 93 93 HOH HOH . C 3 HOH A 7 94 94 HOH HOH . C 3 HOH A 8 95 95 HOH HOH . C 3 HOH A 9 96 96 HOH HOH . C 3 HOH A 10 97 97 HOH HOH . C 3 HOH A 11 98 98 HOH HOH . C 3 HOH A 12 99 99 HOH HOH . C 3 HOH A 13 100 100 HOH HOH . C 3 HOH A 14 101 101 HOH HOH . C 3 HOH A 15 102 102 HOH HOH . C 3 HOH A 16 103 103 HOH HOH . C 3 HOH A 17 104 104 HOH HOH . C 3 HOH A 18 105 105 HOH HOH . C 3 HOH A 19 106 106 HOH HOH . C 3 HOH A 20 107 107 HOH HOH . C 3 HOH A 21 108 108 HOH HOH . C 3 HOH A 22 109 109 HOH HOH . C 3 HOH A 23 110 110 HOH HOH . C 3 HOH A 24 111 111 HOH HOH . C 3 HOH A 25 112 112 HOH HOH . C 3 HOH A 26 113 113 HOH HOH . C 3 HOH A 27 114 114 HOH HOH . C 3 HOH A 28 115 115 HOH HOH . C 3 HOH A 29 116 116 HOH HOH . C 3 HOH A 30 117 117 HOH HOH . C 3 HOH A 31 118 118 HOH HOH . C 3 HOH A 32 119 119 HOH HOH . C 3 HOH A 33 120 120 HOH HOH . C 3 HOH A 34 121 2 HOH HOH . C 3 HOH A 35 122 3 HOH HOH . C 3 HOH A 36 123 123 HOH HOH . C 3 HOH A 37 124 124 HOH HOH . C 3 HOH A 38 125 125 HOH HOH . C 3 HOH A 39 126 126 HOH HOH . C 3 HOH A 40 127 127 HOH HOH . C 3 HOH A 41 128 128 HOH HOH . C 3 HOH A 42 129 129 HOH HOH . C 3 HOH A 43 130 130 HOH HOH . C 3 HOH A 44 131 131 HOH HOH . C 3 HOH A 45 132 132 HOH HOH . C 3 HOH A 46 133 133 HOH HOH . C 3 HOH A 47 134 134 HOH HOH . C 3 HOH A 48 135 135 HOH HOH . C 3 HOH A 49 136 136 HOH HOH . C 3 HOH A 50 137 137 HOH HOH . C 3 HOH A 51 138 138 HOH HOH . C 3 HOH A 52 139 139 HOH HOH . C 3 HOH A 53 140 140 HOH HOH . C 3 HOH A 54 141 141 HOH HOH . C 3 HOH A 55 142 142 HOH HOH . C 3 HOH A 56 143 143 HOH HOH . C 3 HOH A 57 144 144 HOH HOH . C 3 HOH A 58 145 145 HOH HOH . C 3 HOH A 59 146 146 HOH HOH . C 3 HOH A 60 147 147 HOH HOH . C 3 HOH A 61 148 148 HOH HOH . C 3 HOH A 62 149 149 HOH HOH . C 3 HOH A 63 150 150 HOH HOH . C 3 HOH A 64 151 151 HOH HOH . C 3 HOH A 65 152 152 HOH HOH . C 3 HOH A 66 153 153 HOH HOH . C 3 HOH A 67 154 154 HOH HOH . C 3 HOH A 68 155 155 HOH HOH . C 3 HOH A 69 156 156 HOH HOH . C 3 HOH A 70 157 157 HOH HOH . C 3 HOH A 71 158 158 HOH HOH . C 3 HOH A 72 159 159 HOH HOH . C 3 HOH A 73 160 160 HOH HOH . C 3 HOH A 74 161 161 HOH HOH . C 3 HOH A 75 162 162 HOH HOH . C 3 HOH A 76 163 163 HOH HOH . C 3 HOH A 77 164 164 HOH HOH . C 3 HOH A 78 165 165 HOH HOH . C 3 HOH A 79 166 166 HOH HOH . C 3 HOH A 80 167 167 HOH HOH . C 3 HOH A 81 168 168 HOH HOH . C 3 HOH A 82 169 169 HOH HOH . C 3 HOH A 83 170 170 HOH HOH . C 3 HOH A 84 171 171 HOH HOH . C 3 HOH A 85 172 172 HOH HOH . C 3 HOH A 86 173 173 HOH HOH . C 3 HOH A 87 174 174 HOH HOH . C 3 HOH A 88 175 175 HOH HOH . C 3 HOH A 89 176 176 HOH HOH . C 3 HOH A 90 177 177 HOH HOH . C 3 HOH A 91 178 178 HOH HOH . C 3 HOH A 92 179 179 HOH HOH . C 3 HOH A 93 180 180 HOH HOH . C 3 HOH A 94 181 181 HOH HOH . C 3 HOH A 95 182 182 HOH HOH . C 3 HOH A 96 183 183 HOH HOH . C 3 HOH A 97 184 184 HOH HOH . C 3 HOH A 98 185 185 HOH HOH . C 3 HOH A 99 186 186 HOH HOH . C 3 HOH A 100 187 187 HOH HOH . C 3 HOH A 101 188 188 HOH HOH . C 3 HOH A 102 189 189 HOH HOH . C 3 HOH A 103 190 190 HOH HOH . C 3 HOH A 104 191 191 HOH HOH . C 3 HOH A 105 192 192 HOH HOH . C 3 HOH A 106 193 193 HOH HOH . C 3 HOH A 107 194 194 HOH HOH . C 3 HOH A 108 195 195 HOH HOH . C 3 HOH A 109 196 196 HOH HOH . C 3 HOH A 110 197 197 HOH HOH . C 3 HOH A 111 198 198 HOH HOH . C 3 HOH A 112 199 199 HOH HOH . C 3 HOH A 113 201 201 HOH HOH . C 3 HOH A 114 202 202 HOH HOH . C 3 HOH A 115 203 203 HOH HOH . C 3 HOH A 116 204 204 HOH HOH . C 3 HOH A 117 205 205 HOH HOH . C 3 HOH A 118 206 206 HOH HOH . C 3 HOH A 119 207 207 HOH HOH . C 3 HOH A 120 208 208 HOH HOH . C 3 HOH A 121 209 209 HOH HOH . C 3 HOH A 122 210 210 HOH HOH . C 3 HOH A 123 211 211 HOH HOH . C 3 HOH A 124 212 212 HOH HOH . C 3 HOH A 125 213 213 HOH HOH . C 3 HOH A 126 214 214 HOH HOH . C 3 HOH A 127 215 215 HOH HOH . C 3 HOH A 128 216 216 HOH HOH . C 3 HOH A 129 217 217 HOH HOH . C 3 HOH A 130 218 218 HOH HOH . C 3 HOH A 131 219 219 HOH HOH . C 3 HOH A 132 220 220 HOH HOH . C 3 HOH A 133 222 222 HOH HOH . C 3 HOH A 134 223 223 HOH HOH . C 3 HOH A 135 224 224 HOH HOH . C 3 HOH A 136 225 225 HOH HOH . C 3 HOH A 137 226 226 HOH HOH . C 3 HOH A 138 227 227 HOH HOH . C 3 HOH A 139 228 228 HOH HOH . C 3 HOH A 140 229 229 HOH HOH . C 3 HOH A 141 230 230 HOH HOH . C 3 HOH A 142 231 231 HOH HOH . C 3 HOH A 143 232 232 HOH HOH . C 3 HOH A 144 233 233 HOH HOH . C 3 HOH A 145 234 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 18.834 33.062 5.419 1 2.97 ? FE HEC 200 A 1 HETATM 2 C CHA HEC . . . B 2 15.682 34.335 5.949 1 3.68 ? CHA HEC 200 A 1 HETATM 3 C CHB HEC . . . B 2 18.581 31.278 8.299 1 3.64 ? CHB HEC 200 A 1 HETATM 4 C CHC HEC . . . B 2 21.917 31.699 4.836 1 3.9 ? CHC HEC 200 A 1 HETATM 5 C CHD HEC . . . B 2 19.17 34.968 2.617 1 3.98 ? CHD HEC 200 A 1 HETATM 6 N NA HEC . . . B 2 17.389 32.818 6.817 1 3.65 ? NA HEC 200 A 1 HETATM 7 C C1A HEC . . . B 2 16.169 33.454 6.872 1 3.13 ? C1A HEC 200 A 1 HETATM 8 C C2A HEC . . . B 2 15.489 33.056 8.076 1 3.4 ? C2A HEC 200 A 1 HETATM 9 C C3A HEC . . . B 2 16.282 32.194 8.714 1 3.36 ? C3A HEC 200 A 1 HETATM 10 C C4A HEC . . . B 2 17.493 32.038 7.943 1 3.24 ? C4A HEC 200 A 1 HETATM 11 C CMA HEC . . . B 2 15.976 31.441 10.017 1 4.38 ? CMA HEC 200 A 1 HETATM 12 C CAA HEC . . . B 2 14.061 33.487 8.452 1 3.64 ? CAA HEC 200 A 1 HETATM 13 C CBA HEC . . . B 2 13.049 32.52 7.848 1 4.1 ? CBA HEC 200 A 1 HETATM 14 C CGA HEC . . . B 2 11.643 33.051 8.004 1 4 ? CGA HEC 200 A 1 HETATM 15 O O1A HEC . . . B 2 11.282 34.02 7.291 1 4.38 ? O1A HEC 200 A 1 HETATM 16 O O2A HEC . . . B 2 10.868 32.509 8.83 1 4.43 ? O2A HEC 200 A 1 HETATM 17 N NB HEC . . . B 2 20.011 31.751 6.376 1 3.85 ? NB HEC 200 A 1 HETATM 18 C C1B HEC . . . B 2 19.729 31.12 7.568 1 3.5 ? C1B HEC 200 A 1 HETATM 19 C C2B HEC . . . B 2 20.809 30.217 7.889 1 4.1 ? C2B HEC 200 A 1 HETATM 20 C C3B HEC . . . B 2 21.696 30.281 6.891 1 3.93 ? C3B HEC 200 A 1 HETATM 21 C C4B HEC . . . B 2 21.235 31.276 5.951 1 3.08 ? C4B HEC 200 A 1 HETATM 22 C CMB HEC . . . B 2 20.882 29.366 9.171 1 5.49 ? CMB HEC 200 A 1 HETATM 23 C CAB HEC . . . B 2 23.013 29.496 6.74 1 5.55 ? CAB HEC 200 A 1 HETATM 24 C CBB HEC . . . B 2 22.707 27.997 6.555 1 6.24 ? CBB HEC 200 A 1 HETATM 25 N NC HEC . . . B 2 20.275 33.318 4.028 1 3.83 ? NC HEC 200 A 1 HETATM 26 C C1C HEC . . . B 2 21.511 32.706 4.002 1 3.52 ? C1C HEC 200 A 1 HETATM 27 C C2C HEC . . . B 2 22.279 33.251 2.907 1 4.35 ? C2C HEC 200 A 1 HETATM 28 C C3C HEC . . . B 2 21.509 34.155 2.292 1 4.21 ? C3C HEC 200 A 1 HETATM 29 C C4C HEC . . . B 2 20.238 34.191 2.97 1 3.74 ? C4C HEC 200 A 1 HETATM 30 C CMC HEC . . . B 2 23.749 32.905 2.605 1 5.6 ? CMC HEC 200 A 1 HETATM 31 C CAC HEC . . . B 2 21.925 35.168 1.209 1 5.24 ? CAC HEC 200 A 1 HETATM 32 C CBC HEC . . . B 2 22.372 34.431 -0.068 1 7.04 ? CBC HEC 200 A 1 HETATM 33 N ND HEC . . . B 2 17.622 34.377 4.44 1 3.95 ? ND HEC 200 A 1 HETATM 34 C C1D HEC . . . B 2 17.965 35.025 3.264 1 3.54 ? C1D HEC 200 A 1 HETATM 35 C C2D HEC . . . B 2 16.86 35.814 2.808 1 4.98 ? C2D HEC 200 A 1 HETATM 36 C C3D HEC . . . B 2 15.793 35.66 3.861 1 4.26 ? C3D HEC 200 A 1 HETATM 37 C C4D HEC . . . B 2 16.345 34.755 4.829 1 3.75 ? C4D HEC 200 A 1 HETATM 38 C CMD HEC . . . B 2 16.784 36.67 1.541 1 5.43 ? CMD HEC 200 A 1 HETATM 39 C CAD HEC . . . B 2 14.388 36.267 3.813 1 4.41 ? CAD HEC 200 A 1 HETATM 40 C CBD HEC . . . B 2 13.406 35.249 3.247 1 4.28 ? CBD HEC 200 A 1 HETATM 41 C CGD HEC . . . B 2 12.806 34.44 4.366 1 4.23 ? CGD HEC 200 A 1 HETATM 42 O O1D HEC . . . B 2 12.386 35.065 5.376 1 4.07 ? O1D HEC 200 A 1 HETATM 43 O O2D HEC . . . B 2 12.76 33.187 4.262 1 5.02 ? O2D HEC 200 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #