data_2ZY0 # _model_server_result.job_id tGvqn_YD0j33XVk8ddYZZw _model_server_result.datetime_utc '2025-07-08 06:20:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zy0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 2ZY0 # _exptl.entry_id 2ZY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.6 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-1,3-benzodisilol-5-yl)-1,3-dioxolan-2-yl]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZY0 _cell.length_a 64.975 _cell.length_b 66.85 _cell.length_c 110.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H26 O4 Si2' _chem_comp.formula_weight 398.6 _chem_comp.id 21P _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-1,3-benzodisilol-5-yl)-1,3-dioxolan-2-yl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 21P doub 1 n y C11 C10 21P sing 2 n y C14 C15 21P sing 3 n n C14 O3 21P sing 4 n n C9 C8 21P sing 5 n y C9 C10 21P doub 6 n y C13 C10 21P sing 7 n n C13 C16 21P sing 8 n n C13 O4 21P sing 9 n n C13 O3 21P sing 10 n n C8 SI1 21P sing 11 n n C8 C7 21P doub 12 n y C5 SI2 21P sing 13 n n C1 SI1 21P sing 14 n n C12 C7 21P sing 15 n y C19 C18 21P doub 16 n y C19 C20 21P sing 17 n y C19 C22 21P sing 18 n n C3 SI1 21P sing 19 n n C3 SI2 21P sing 20 n n C6 SI2 21P sing 21 n n C18 C17 21P sing 22 n y C21 C20 21P doub 23 n y C21 C16 21P sing 24 n y C16 C17 21P doub 25 n y O2 C22 21P doub 26 n n C22 O1 21P sing 27 n n O4 C15 21P sing 28 n n SI1 C2 21P sing 29 n n C7 SI2 21P sing 30 n n C11 H11 21P sing 31 n n C14 H14 21P sing 32 n n C14 H14A 21P sing 33 n n C9 H9 21P sing 34 n n C5 H5 21P sing 35 n n C5 H5A 21P sing 36 n n C5 H5B 21P sing 37 n n C1 H1 21P sing 38 n n C1 H1A 21P sing 39 n n C1 H1B 21P sing 40 n n C12 H12 21P sing 41 n n C3 H3 21P sing 42 n n C3 H3A 21P sing 43 n n C6 H6 21P sing 44 n n C6 H6A 21P sing 45 n n C6 H6B 21P sing 46 n n C18 H18 21P sing 47 n n C21 H21 21P sing 48 n n C20 H20 21P sing 49 n n C17 H17 21P sing 50 n n O1 HO1 21P sing 51 n n C15 H15 21P sing 52 n n C15 H15A 21P sing 53 n n C2 H2 21P sing 54 n n C2 H2A 21P sing 55 n n C2 H2B 21P sing 56 n n # _atom_sites.entry_id 2ZY0 _atom_sites.fract_transf_matrix[1][1] 0.015391 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 21P A 1 1 1 21P P21 . F 3 21P C 1 2 2 21P P21 . G 4 HOH A 1 5 5 HOH HOH . G 4 HOH A 2 6 6 HOH HOH . G 4 HOH A 3 9 9 HOH HOH . G 4 HOH A 4 11 11 HOH HOH . G 4 HOH A 5 15 15 HOH HOH . G 4 HOH A 6 21 21 HOH HOH . G 4 HOH A 7 25 25 HOH HOH . G 4 HOH A 8 28 28 HOH HOH . G 4 HOH A 9 31 31 HOH HOH . G 4 HOH A 10 32 32 HOH HOH . G 4 HOH A 11 33 33 HOH HOH . G 4 HOH A 12 36 36 HOH HOH . G 4 HOH A 13 39 39 HOH HOH . H 4 HOH B 1 16 16 HOH HOH . I 4 HOH C 1 1 1 HOH HOH . I 4 HOH C 2 17 17 HOH HOH . I 4 HOH C 3 19 19 HOH HOH . I 4 HOH C 4 20 20 HOH HOH . I 4 HOH C 5 22 22 HOH HOH . I 4 HOH C 6 23 23 HOH HOH . I 4 HOH C 7 24 24 HOH HOH . I 4 HOH C 8 26 26 HOH HOH . I 4 HOH C 9 30 30 HOH HOH . I 4 HOH C 10 35 35 HOH HOH . I 4 HOH C 11 37 37 HOH HOH . I 4 HOH C 12 38 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 21P . . . F 3 35.728 34.902 12.186 1 37.53 ? C11 21P 2 C 1 HETATM 2 C C14 21P . . . F 3 33.765 35.695 14.905 1 37.94 ? C14 21P 2 C 1 HETATM 3 C C9 21P . . . F 3 34.054 35.731 10.634 1 37.11 ? C9 21P 2 C 1 HETATM 4 C C13 21P . . . F 3 34.196 36.789 12.92 1 37.95 ? C13 21P 2 C 1 HETATM 5 C C8 21P . . . F 3 34.511 34.801 9.701 1 37.03 ? C8 21P 2 C 1 HETATM 6 C C5 21P . . . F 3 35.615 31.022 9.197 1 36.58 ? C5 21P 2 C 1 HETATM 7 C C1 21P . . . F 3 32.017 34.077 8.143 1 36.67 ? C1 21P 2 C 1 HETATM 8 C C12 21P . . . F 3 36.176 33.968 11.249 1 36.93 ? C12 21P 2 C 1 HETATM 9 C C19 21P . . . F 3 35.152 40.911 12.022 1 38.67 ? C19 21P 2 C 1 HETATM 10 C C3 21P . . . F 3 34.828 33.235 7.274 1 36.44 ? C3 21P 2 C 1 HETATM 11 C C6 21P . . . F 3 37.808 32.859 8.19 1 36.39 ? C6 21P 2 C 1 HETATM 12 C C18 21P . . . F 3 35.371 39.927 11.058 1 38.55 ? C18 21P 2 C 1 HETATM 13 C C21 21P . . . F 3 34.322 39.213 13.541 1 38.08 ? C21 21P 2 C 1 HETATM 14 C C20 21P . . . F 3 34.623 40.546 13.263 1 38.66 ? C20 21P 2 C 1 HETATM 15 C C10 21P . . . F 3 34.676 35.788 11.889 1 37.81 ? C10 21P 2 C 1 HETATM 16 C C16 21P . . . F 3 34.54 38.223 12.585 1 38.09 ? C16 21P 2 C 1 HETATM 17 C C17 21P . . . F 3 35.064 38.596 11.344 1 38.66 ? C17 21P 2 C 1 HETATM 18 O O2 21P . . . F 3 36.555 42.649 11.183 1 38.62 ? O2 21P 2 C 1 HETATM 19 C C22 21P . . . F 3 35.466 42.354 11.722 1 38.53 ? C22 21P 2 C 1 HETATM 20 O O1 21P . . . F 3 34.616 43.232 12.005 1 37.91 ? O1 21P 2 C 1 HETATM 21 O O4 21P . . . F 3 32.776 36.691 13.025 1 38.23 ? O4 21P 2 C 1 HETATM 22 C C15 21P . . . F 3 32.486 35.79 14.088 1 37.86 ? C15 21P 2 C 1 HETATM 23 O O3 21P . . . F 3 34.73 36.488 14.212 1 37.6 ? O3 21P 2 C 1 HETATM 24 SI SI1 21P . . . F 3 33.79 34.612 7.996 1 36.11 ? SI1 21P 2 C 1 HETATM 25 C C2 21P . . . F 3 33.91 36.208 7.045 1 36.04 ? C2 21P 2 C 1 HETATM 26 C C7 21P . . . F 3 35.554 33.933 10.003 1 36.97 ? C7 21P 2 C 1 HETATM 27 SI SI2 21P . . . F 3 36.008 32.749 8.638 1 36.6 ? SI2 21P 2 C 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #