data_2ZYF # _model_server_result.job_id '_pAg6nhsR-SxiYXasoL-vQ' _model_server_result.datetime_utc '2025-02-28 08:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":384}' # _entry.id 2ZYF # _exptl.entry_id 2ZYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZYF _cell.length_a 135.465 _cell.length_b 135.465 _cell.length_c 126.612 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 67.7325 -117.316131 -63.306 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 13 A GLU 13 1_555 C MG MG . A MG 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc2 B O5 AKG . A AKG 383 1_555 C MG MG . A MG 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 B O1 AKG . A AKG 383 1_555 C MG MG . A MG 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc4 C MG MG . A MG 384 1_555 D O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZYF _atom_sites.fract_transf_matrix[1][1] 0.007382 _atom_sites.fract_transf_matrix[1][2] 0.004262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 383 1 AKG AKG . C 3 MG A 1 384 1 MG MG . D 4 HOH A 1 385 1 HOH HOH . D 4 HOH A 2 386 2 HOH HOH . D 4 HOH A 3 387 3 HOH HOH . D 4 HOH A 4 388 4 HOH HOH . D 4 HOH A 5 389 5 HOH HOH . D 4 HOH A 6 390 6 HOH HOH . D 4 HOH A 7 391 7 HOH HOH . D 4 HOH A 8 392 8 HOH HOH . D 4 HOH A 9 393 9 HOH HOH . D 4 HOH A 10 394 10 HOH HOH . D 4 HOH A 11 395 11 HOH HOH . D 4 HOH A 12 396 12 HOH HOH . D 4 HOH A 13 397 13 HOH HOH . D 4 HOH A 14 398 14 HOH HOH . D 4 HOH A 15 399 15 HOH HOH . D 4 HOH A 16 400 16 HOH HOH . D 4 HOH A 17 401 17 HOH HOH . D 4 HOH A 18 402 18 HOH HOH . D 4 HOH A 19 403 19 HOH HOH . D 4 HOH A 20 404 20 HOH HOH . D 4 HOH A 21 405 21 HOH HOH . D 4 HOH A 22 406 22 HOH HOH . D 4 HOH A 23 407 23 HOH HOH . D 4 HOH A 24 408 24 HOH HOH . D 4 HOH A 25 409 25 HOH HOH . D 4 HOH A 26 410 29 HOH HOH . D 4 HOH A 27 411 30 HOH HOH . D 4 HOH A 28 412 32 HOH HOH . D 4 HOH A 29 413 33 HOH HOH . D 4 HOH A 30 414 36 HOH HOH . D 4 HOH A 31 415 38 HOH HOH . D 4 HOH A 32 416 41 HOH HOH . D 4 HOH A 33 417 42 HOH HOH . D 4 HOH A 34 418 43 HOH HOH . D 4 HOH A 35 419 44 HOH HOH . D 4 HOH A 36 420 45 HOH HOH . D 4 HOH A 37 421 46 HOH HOH . D 4 HOH A 38 422 49 HOH HOH . D 4 HOH A 39 423 50 HOH HOH . D 4 HOH A 40 424 51 HOH HOH . D 4 HOH A 41 425 52 HOH HOH . D 4 HOH A 42 426 53 HOH HOH . D 4 HOH A 43 427 54 HOH HOH . D 4 HOH A 44 428 55 HOH HOH . D 4 HOH A 45 429 58 HOH HOH . D 4 HOH A 46 430 59 HOH HOH . D 4 HOH A 47 431 61 HOH HOH . D 4 HOH A 48 432 62 HOH HOH . D 4 HOH A 49 433 63 HOH HOH . D 4 HOH A 50 434 65 HOH HOH . D 4 HOH A 51 435 67 HOH HOH . D 4 HOH A 52 436 68 HOH HOH . D 4 HOH A 53 437 69 HOH HOH . D 4 HOH A 54 438 70 HOH HOH . D 4 HOH A 55 439 71 HOH HOH . D 4 HOH A 56 440 72 HOH HOH . D 4 HOH A 57 441 73 HOH HOH . D 4 HOH A 58 442 75 HOH HOH . D 4 HOH A 59 443 78 HOH HOH . D 4 HOH A 60 444 79 HOH HOH . D 4 HOH A 61 445 80 HOH HOH . D 4 HOH A 62 446 81 HOH HOH . D 4 HOH A 63 447 84 HOH HOH . D 4 HOH A 64 448 85 HOH HOH . D 4 HOH A 65 449 86 HOH HOH . D 4 HOH A 66 450 87 HOH HOH . D 4 HOH A 67 451 88 HOH HOH . D 4 HOH A 68 452 89 HOH HOH . D 4 HOH A 69 453 91 HOH HOH . D 4 HOH A 70 454 92 HOH HOH . D 4 HOH A 71 455 93 HOH HOH . D 4 HOH A 72 456 96 HOH HOH . D 4 HOH A 73 457 97 HOH HOH . D 4 HOH A 74 458 99 HOH HOH . D 4 HOH A 75 459 100 HOH HOH . D 4 HOH A 76 460 102 HOH HOH . D 4 HOH A 77 461 104 HOH HOH . D 4 HOH A 78 462 107 HOH HOH . D 4 HOH A 79 463 109 HOH HOH . D 4 HOH A 80 464 110 HOH HOH . D 4 HOH A 81 465 111 HOH HOH . D 4 HOH A 82 466 112 HOH HOH . D 4 HOH A 83 467 113 HOH HOH . D 4 HOH A 84 468 114 HOH HOH . D 4 HOH A 85 469 119 HOH HOH . D 4 HOH A 86 470 120 HOH HOH . D 4 HOH A 87 471 123 HOH HOH . D 4 HOH A 88 472 124 HOH HOH . D 4 HOH A 89 473 125 HOH HOH . D 4 HOH A 90 474 127 HOH HOH . D 4 HOH A 91 475 129 HOH HOH . D 4 HOH A 92 476 132 HOH HOH . D 4 HOH A 93 477 133 HOH HOH . D 4 HOH A 94 478 135 HOH HOH . D 4 HOH A 95 479 137 HOH HOH . D 4 HOH A 96 480 139 HOH HOH . D 4 HOH A 97 481 140 HOH HOH . D 4 HOH A 98 482 141 HOH HOH . D 4 HOH A 99 483 143 HOH HOH . D 4 HOH A 100 484 144 HOH HOH . D 4 HOH A 101 485 146 HOH HOH . D 4 HOH A 102 486 147 HOH HOH . D 4 HOH A 103 487 153 HOH HOH . D 4 HOH A 104 488 154 HOH HOH . D 4 HOH A 105 489 155 HOH HOH . D 4 HOH A 106 490 157 HOH HOH . D 4 HOH A 107 491 159 HOH HOH . D 4 HOH A 108 492 163 HOH HOH . D 4 HOH A 109 493 165 HOH HOH . D 4 HOH A 110 494 166 HOH HOH . D 4 HOH A 111 495 170 HOH HOH . D 4 HOH A 112 496 180 HOH HOH . D 4 HOH A 113 497 182 HOH HOH . D 4 HOH A 114 498 184 HOH HOH . D 4 HOH A 115 499 185 HOH HOH . D 4 HOH A 116 500 189 HOH HOH . D 4 HOH A 117 501 190 HOH HOH . D 4 HOH A 118 502 192 HOH HOH . D 4 HOH A 119 503 195 HOH HOH . D 4 HOH A 120 504 196 HOH HOH . D 4 HOH A 121 505 199 HOH HOH . D 4 HOH A 122 506 203 HOH HOH . D 4 HOH A 123 507 205 HOH HOH . D 4 HOH A 124 508 206 HOH HOH . D 4 HOH A 125 509 209 HOH HOH . D 4 HOH A 126 510 211 HOH HOH . D 4 HOH A 127 511 212 HOH HOH . D 4 HOH A 128 512 214 HOH HOH . D 4 HOH A 129 513 215 HOH HOH . D 4 HOH A 130 514 216 HOH HOH . D 4 HOH A 131 515 218 HOH HOH . D 4 HOH A 132 516 220 HOH HOH . D 4 HOH A 133 517 224 HOH HOH . D 4 HOH A 134 518 226 HOH HOH . D 4 HOH A 135 519 227 HOH HOH . D 4 HOH A 136 520 228 HOH HOH . D 4 HOH A 137 521 229 HOH HOH . D 4 HOH A 138 522 230 HOH HOH . D 4 HOH A 139 523 231 HOH HOH . D 4 HOH A 140 524 232 HOH HOH . D 4 HOH A 141 525 233 HOH HOH . D 4 HOH A 142 526 234 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.375 _atom_site.Cartn_y -41.07 _atom_site.Cartn_z -22.692 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 384 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #