data_2ZYL # _model_server_result.job_id rBTzmvQc1s7w1FW5CRwY1A _model_server_result.datetime_utc '2024-11-28 05:10:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":387}' # _entry.id 2ZYL # _exptl.entry_id 2ZYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2ZYL _cell.length_a 116.2 _cell.length_b 116.2 _cell.length_c 81 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.1 -100.632152 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 116.2 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 67 A CYS 67 1_555 B FE2 FES . A FES 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A ND1 HIS 69 A HIS 69 1_555 B FE1 FES . A FES 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 A SG CYS 86 A CYS 86 1_555 B FE2 FES . A FES 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A ND1 HIS 89 A HIS 89 1_555 B FE1 FES . A FES 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc5 A O THR 177 A THR 177 1_555 D NA NA . A NA 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc6 A N MET 179 A MET 179 1_555 D NA NA . A NA 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc7 A NE2 HIS 181 A HIS 181 1_555 C FE FE2 . A FE2 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc8 A NE2 HIS 186 A HIS 186 1_555 C FE FE2 . A FE2 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc9 A OD1 ASP 304 A ASP 304 1_555 C FE FE2 . A FE2 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc10 A OD2 ASP 304 A ASP 304 1_555 C FE FE2 . A FE2 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc11 A O GLU 322 A GLU 322 1_555 D NA NA . A NA 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc12 D NA NA . A NA 387 1_555 E O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc13 C FE FE2 . A FE2 452 1_555 E O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2ZYL _atom_sites.fract_transf_matrix[1][1] 0.008606 _atom_sites.fract_transf_matrix[1][2] 0.004969 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 451 451 FES FES . C 3 FE2 A 1 452 452 FE2 FE2 . D 4 NA A 1 387 373 NA NA . E 5 HOH A 1 388 1 HOH HOH . E 5 HOH A 2 389 2 HOH HOH . E 5 HOH A 3 390 3 HOH HOH . E 5 HOH A 4 391 4 HOH HOH . E 5 HOH A 5 392 5 HOH HOH . E 5 HOH A 6 393 6 HOH HOH . E 5 HOH A 7 394 7 HOH HOH . E 5 HOH A 8 395 8 HOH HOH . E 5 HOH A 9 396 9 HOH HOH . E 5 HOH A 10 397 10 HOH HOH . E 5 HOH A 11 398 11 HOH HOH . E 5 HOH A 12 399 12 HOH HOH . E 5 HOH A 13 400 13 HOH HOH . E 5 HOH A 14 401 14 HOH HOH . E 5 HOH A 15 402 15 HOH HOH . E 5 HOH A 16 403 16 HOH HOH . E 5 HOH A 17 404 17 HOH HOH . E 5 HOH A 18 405 18 HOH HOH . E 5 HOH A 19 406 19 HOH HOH . E 5 HOH A 20 407 20 HOH HOH . E 5 HOH A 21 408 21 HOH HOH . E 5 HOH A 22 409 22 HOH HOH . E 5 HOH A 23 410 23 HOH HOH . E 5 HOH A 24 411 24 HOH HOH . E 5 HOH A 25 412 25 HOH HOH . E 5 HOH A 26 413 27 HOH HOH . E 5 HOH A 27 414 28 HOH HOH . E 5 HOH A 28 415 29 HOH HOH . E 5 HOH A 29 416 30 HOH HOH . E 5 HOH A 30 417 31 HOH HOH . E 5 HOH A 31 418 32 HOH HOH . E 5 HOH A 32 419 33 HOH HOH . E 5 HOH A 33 420 34 HOH HOH . E 5 HOH A 34 421 35 HOH HOH . E 5 HOH A 35 422 36 HOH HOH . E 5 HOH A 36 423 37 HOH HOH . E 5 HOH A 37 424 38 HOH HOH . E 5 HOH A 38 425 39 HOH HOH . E 5 HOH A 39 426 40 HOH HOH . E 5 HOH A 40 427 41 HOH HOH . E 5 HOH A 41 428 42 HOH HOH . E 5 HOH A 42 429 43 HOH HOH . E 5 HOH A 43 430 44 HOH HOH . E 5 HOH A 44 431 45 HOH HOH . E 5 HOH A 45 432 47 HOH HOH . E 5 HOH A 46 433 48 HOH HOH . E 5 HOH A 47 434 49 HOH HOH . E 5 HOH A 48 435 50 HOH HOH . E 5 HOH A 49 436 51 HOH HOH . E 5 HOH A 50 437 52 HOH HOH . E 5 HOH A 51 438 53 HOH HOH . E 5 HOH A 52 439 54 HOH HOH . E 5 HOH A 53 440 55 HOH HOH . E 5 HOH A 54 441 56 HOH HOH . E 5 HOH A 55 442 57 HOH HOH . E 5 HOH A 56 443 58 HOH HOH . E 5 HOH A 57 444 59 HOH HOH . E 5 HOH A 58 445 60 HOH HOH . E 5 HOH A 59 446 61 HOH HOH . E 5 HOH A 60 447 62 HOH HOH . E 5 HOH A 61 448 63 HOH HOH . E 5 HOH A 62 449 64 HOH HOH . E 5 HOH A 63 450 65 HOH HOH . E 5 HOH A 64 453 66 HOH HOH . E 5 HOH A 65 454 68 HOH HOH . E 5 HOH A 66 455 69 HOH HOH . E 5 HOH A 67 456 70 HOH HOH . E 5 HOH A 68 457 71 HOH HOH . E 5 HOH A 69 458 72 HOH HOH . E 5 HOH A 70 459 73 HOH HOH . E 5 HOH A 71 460 74 HOH HOH . E 5 HOH A 72 461 75 HOH HOH . E 5 HOH A 73 462 76 HOH HOH . E 5 HOH A 74 463 77 HOH HOH . E 5 HOH A 75 464 78 HOH HOH . E 5 HOH A 76 465 79 HOH HOH . E 5 HOH A 77 466 80 HOH HOH . E 5 HOH A 78 467 81 HOH HOH . E 5 HOH A 79 468 82 HOH HOH . E 5 HOH A 80 469 83 HOH HOH . E 5 HOH A 81 470 84 HOH HOH . E 5 HOH A 82 471 85 HOH HOH . E 5 HOH A 83 472 86 HOH HOH . E 5 HOH A 84 473 87 HOH HOH . E 5 HOH A 85 474 88 HOH HOH . E 5 HOH A 86 475 89 HOH HOH . E 5 HOH A 87 476 90 HOH HOH . E 5 HOH A 88 477 91 HOH HOH . E 5 HOH A 89 478 92 HOH HOH . E 5 HOH A 90 479 93 HOH HOH . E 5 HOH A 91 480 94 HOH HOH . E 5 HOH A 92 481 95 HOH HOH . E 5 HOH A 93 482 96 HOH HOH . E 5 HOH A 94 483 97 HOH HOH . E 5 HOH A 95 484 98 HOH HOH . E 5 HOH A 96 485 99 HOH HOH . E 5 HOH A 97 486 100 HOH HOH . E 5 HOH A 98 487 101 HOH HOH . E 5 HOH A 99 488 102 HOH HOH . E 5 HOH A 100 489 103 HOH HOH . E 5 HOH A 101 490 104 HOH HOH . E 5 HOH A 102 491 105 HOH HOH . E 5 HOH A 103 492 106 HOH HOH . E 5 HOH A 104 493 107 HOH HOH . E 5 HOH A 105 494 108 HOH HOH . E 5 HOH A 106 495 109 HOH HOH . E 5 HOH A 107 496 110 HOH HOH . E 5 HOH A 108 497 111 HOH HOH . E 5 HOH A 109 498 112 HOH HOH . E 5 HOH A 110 499 113 HOH HOH . E 5 HOH A 111 500 114 HOH HOH . E 5 HOH A 112 501 115 HOH HOH . E 5 HOH A 113 502 116 HOH HOH . E 5 HOH A 114 503 117 HOH HOH . E 5 HOH A 115 504 118 HOH HOH . E 5 HOH A 116 505 119 HOH HOH . E 5 HOH A 117 506 120 HOH HOH . E 5 HOH A 118 507 121 HOH HOH . E 5 HOH A 119 508 122 HOH HOH . E 5 HOH A 120 509 123 HOH HOH . E 5 HOH A 121 510 124 HOH HOH . E 5 HOH A 122 511 125 HOH HOH . E 5 HOH A 123 512 126 HOH HOH . E 5 HOH A 124 513 127 HOH HOH . E 5 HOH A 125 514 128 HOH HOH . E 5 HOH A 126 515 129 HOH HOH . E 5 HOH A 127 516 130 HOH HOH . E 5 HOH A 128 517 131 HOH HOH . E 5 HOH A 129 518 132 HOH HOH . E 5 HOH A 130 519 133 HOH HOH . E 5 HOH A 131 520 135 HOH HOH . E 5 HOH A 132 521 136 HOH HOH . E 5 HOH A 133 522 137 HOH HOH . E 5 HOH A 134 523 138 HOH HOH . E 5 HOH A 135 524 139 HOH HOH . E 5 HOH A 136 525 140 HOH HOH . E 5 HOH A 137 526 141 HOH HOH . E 5 HOH A 138 527 142 HOH HOH . E 5 HOH A 139 528 143 HOH HOH . E 5 HOH A 140 529 144 HOH HOH . E 5 HOH A 141 530 145 HOH HOH . E 5 HOH A 142 531 146 HOH HOH . E 5 HOH A 143 532 147 HOH HOH . E 5 HOH A 144 533 148 HOH HOH . E 5 HOH A 145 534 149 HOH HOH . E 5 HOH A 146 535 150 HOH HOH . E 5 HOH A 147 536 151 HOH HOH . E 5 HOH A 148 537 152 HOH HOH . E 5 HOH A 149 538 153 HOH HOH . E 5 HOH A 150 539 154 HOH HOH . E 5 HOH A 151 540 155 HOH HOH . E 5 HOH A 152 541 156 HOH HOH . E 5 HOH A 153 542 157 HOH HOH . E 5 HOH A 154 543 158 HOH HOH . E 5 HOH A 155 544 159 HOH HOH . E 5 HOH A 156 545 160 HOH HOH . E 5 HOH A 157 546 161 HOH HOH . E 5 HOH A 158 547 162 HOH HOH . E 5 HOH A 159 548 163 HOH HOH . E 5 HOH A 160 549 164 HOH HOH . E 5 HOH A 161 550 165 HOH HOH . E 5 HOH A 162 551 166 HOH HOH . E 5 HOH A 163 552 167 HOH HOH . E 5 HOH A 164 553 168 HOH HOH . E 5 HOH A 165 554 169 HOH HOH . E 5 HOH A 166 555 170 HOH HOH . E 5 HOH A 167 556 171 HOH HOH . E 5 HOH A 168 557 172 HOH HOH . E 5 HOH A 169 558 173 HOH HOH . E 5 HOH A 170 559 174 HOH HOH . E 5 HOH A 171 560 175 HOH HOH . E 5 HOH A 172 561 176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 21.419 _atom_site.Cartn_y -35.92 _atom_site.Cartn_z 10.471 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 387 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #