data_2ZYT # _model_server_result.job_id akrRcjOoq5cBIQQA_aujgg _model_server_result.datetime_utc '2024-11-24 14:13:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zyt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 2ZYT # _exptl.entry_id 2ZYT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.2 _cell.angle_gamma 90 _cell.entry_id 2ZYT _cell.length_a 160.156 _cell.length_b 65.154 _cell.length_c 46.824 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZYT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2ZYT _atom_sites.fract_transf_matrix[1][1] 0.006244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PPS X 1 501 501 PPS PPS . C 3 GOL X 1 1001 1001 GOL GOL . D 3 GOL X 1 1002 1002 GOL GOL . E 4 HOH X 1 2001 2001 HOH HOH . E 4 HOH X 2 2002 2002 HOH HOH . E 4 HOH X 3 2003 2003 HOH HOH . E 4 HOH X 4 2004 2004 HOH HOH . E 4 HOH X 5 2005 2005 HOH HOH . E 4 HOH X 6 2006 2006 HOH HOH . E 4 HOH X 7 2007 2007 HOH HOH . E 4 HOH X 8 2008 2008 HOH HOH . E 4 HOH X 9 2009 2009 HOH HOH . E 4 HOH X 10 2010 2010 HOH HOH . E 4 HOH X 11 2011 2011 HOH HOH . E 4 HOH X 12 2012 2012 HOH HOH . E 4 HOH X 13 2013 2013 HOH HOH . E 4 HOH X 14 2014 2014 HOH HOH . E 4 HOH X 15 2015 2015 HOH HOH . E 4 HOH X 16 2016 2016 HOH HOH . E 4 HOH X 17 2017 2017 HOH HOH . E 4 HOH X 18 2018 2018 HOH HOH . E 4 HOH X 19 2019 2019 HOH HOH . E 4 HOH X 20 2020 2020 HOH HOH . E 4 HOH X 21 2021 2021 HOH HOH . E 4 HOH X 22 2022 2022 HOH HOH . E 4 HOH X 23 2023 2023 HOH HOH . E 4 HOH X 24 2024 2024 HOH HOH . E 4 HOH X 25 2025 2025 HOH HOH . E 4 HOH X 26 2026 2026 HOH HOH . E 4 HOH X 27 2027 2027 HOH HOH . E 4 HOH X 28 2028 2028 HOH HOH . E 4 HOH X 29 2029 2029 HOH HOH . E 4 HOH X 30 2030 2030 HOH HOH . E 4 HOH X 31 2031 2031 HOH HOH . E 4 HOH X 32 2032 2032 HOH HOH . E 4 HOH X 33 2033 2033 HOH HOH . E 4 HOH X 34 2034 2034 HOH HOH . E 4 HOH X 35 2035 2035 HOH HOH . E 4 HOH X 36 2036 2036 HOH HOH . E 4 HOH X 37 2037 2037 HOH HOH . E 4 HOH X 38 2038 2038 HOH HOH . E 4 HOH X 39 2039 2039 HOH HOH . E 4 HOH X 40 2040 2040 HOH HOH . E 4 HOH X 41 2041 2041 HOH HOH . E 4 HOH X 42 2042 2042 HOH HOH . E 4 HOH X 43 2043 2043 HOH HOH . E 4 HOH X 44 2044 2044 HOH HOH . E 4 HOH X 45 2045 2045 HOH HOH . E 4 HOH X 46 2046 2046 HOH HOH . E 4 HOH X 47 2047 2047 HOH HOH . E 4 HOH X 48 2048 2048 HOH HOH . E 4 HOH X 49 2049 2049 HOH HOH . E 4 HOH X 50 2050 2050 HOH HOH . E 4 HOH X 51 2051 2051 HOH HOH . E 4 HOH X 52 2052 2052 HOH HOH . E 4 HOH X 53 2053 2053 HOH HOH . E 4 HOH X 54 2054 2054 HOH HOH . E 4 HOH X 55 2055 2055 HOH HOH . E 4 HOH X 56 2056 2056 HOH HOH . E 4 HOH X 57 2058 2058 HOH HOH . E 4 HOH X 58 2059 2059 HOH HOH . E 4 HOH X 59 2060 2060 HOH HOH . E 4 HOH X 60 2061 2061 HOH HOH . E 4 HOH X 61 2062 2062 HOH HOH . E 4 HOH X 62 2063 2063 HOH HOH . E 4 HOH X 63 2065 2065 HOH HOH . E 4 HOH X 64 2066 2066 HOH HOH . E 4 HOH X 65 2067 2067 HOH HOH . E 4 HOH X 66 2068 2068 HOH HOH . E 4 HOH X 67 2069 2069 HOH HOH . E 4 HOH X 68 2070 2070 HOH HOH . E 4 HOH X 69 2071 2071 HOH HOH . E 4 HOH X 70 2072 2072 HOH HOH . E 4 HOH X 71 2073 2073 HOH HOH . E 4 HOH X 72 2074 2074 HOH HOH . E 4 HOH X 73 2075 2075 HOH HOH . E 4 HOH X 74 2076 2076 HOH HOH . E 4 HOH X 75 2077 2077 HOH HOH . E 4 HOH X 76 2078 2078 HOH HOH . E 4 HOH X 77 2079 2079 HOH HOH . E 4 HOH X 78 2080 2080 HOH HOH . E 4 HOH X 79 2081 2081 HOH HOH . E 4 HOH X 80 2082 2082 HOH HOH . E 4 HOH X 81 2083 2083 HOH HOH . E 4 HOH X 82 2084 2084 HOH HOH . E 4 HOH X 83 2085 2085 HOH HOH . E 4 HOH X 84 2086 2086 HOH HOH . E 4 HOH X 85 2087 2087 HOH HOH . E 4 HOH X 86 2088 2088 HOH HOH . E 4 HOH X 87 2089 2089 HOH HOH . E 4 HOH X 88 2091 2091 HOH HOH . E 4 HOH X 89 2092 2092 HOH HOH . E 4 HOH X 90 2093 2093 HOH HOH . E 4 HOH X 91 2094 2094 HOH HOH . E 4 HOH X 92 2095 2095 HOH HOH . E 4 HOH X 93 2096 2096 HOH HOH . E 4 HOH X 94 2097 2097 HOH HOH . E 4 HOH X 95 2098 2098 HOH HOH . E 4 HOH X 96 2099 2099 HOH HOH . E 4 HOH X 97 2100 2100 HOH HOH . E 4 HOH X 98 2101 2101 HOH HOH . E 4 HOH X 99 2102 2102 HOH HOH . E 4 HOH X 100 2103 2103 HOH HOH . E 4 HOH X 101 2104 2104 HOH HOH . E 4 HOH X 102 2105 2105 HOH HOH . E 4 HOH X 103 2106 2106 HOH HOH . E 4 HOH X 104 2107 2107 HOH HOH . E 4 HOH X 105 2108 2108 HOH HOH . E 4 HOH X 106 2109 2109 HOH HOH . E 4 HOH X 107 2110 2110 HOH HOH . E 4 HOH X 108 2111 2111 HOH HOH . E 4 HOH X 109 2113 2113 HOH HOH . E 4 HOH X 110 2114 2114 HOH HOH . E 4 HOH X 111 2115 2115 HOH HOH . E 4 HOH X 112 2116 2116 HOH HOH . E 4 HOH X 113 2117 2117 HOH HOH . E 4 HOH X 114 2118 2118 HOH HOH . E 4 HOH X 115 2119 2119 HOH HOH . E 4 HOH X 116 2120 2120 HOH HOH . E 4 HOH X 117 2121 2121 HOH HOH . E 4 HOH X 118 2122 2122 HOH HOH . E 4 HOH X 119 2123 2123 HOH HOH . E 4 HOH X 120 2124 2124 HOH HOH . E 4 HOH X 121 2125 2125 HOH HOH . E 4 HOH X 122 2126 2126 HOH HOH . E 4 HOH X 123 2127 2127 HOH HOH . E 4 HOH X 124 2128 2128 HOH HOH . E 4 HOH X 125 2129 2129 HOH HOH . E 4 HOH X 126 2130 2130 HOH HOH . E 4 HOH X 127 2131 2131 HOH HOH . E 4 HOH X 128 2132 2132 HOH HOH . E 4 HOH X 129 2133 2133 HOH HOH . E 4 HOH X 130 2134 2134 HOH HOH . E 4 HOH X 131 2135 2135 HOH HOH . E 4 HOH X 132 2136 2136 HOH HOH . E 4 HOH X 133 2137 2137 HOH HOH . E 4 HOH X 134 2138 2138 HOH HOH . E 4 HOH X 135 2139 2139 HOH HOH . E 4 HOH X 136 2140 2140 HOH HOH . E 4 HOH X 137 2141 2141 HOH HOH . E 4 HOH X 138 2142 2142 HOH HOH . E 4 HOH X 139 2143 2143 HOH HOH . E 4 HOH X 140 2144 2144 HOH HOH . E 4 HOH X 141 2145 2145 HOH HOH . E 4 HOH X 142 2146 2146 HOH HOH . E 4 HOH X 143 2147 2147 HOH HOH . E 4 HOH X 144 2148 2148 HOH HOH . E 4 HOH X 145 2149 2149 HOH HOH . E 4 HOH X 146 2150 2150 HOH HOH . E 4 HOH X 147 2151 2151 HOH HOH . E 4 HOH X 148 2152 2152 HOH HOH . E 4 HOH X 149 2153 2153 HOH HOH . E 4 HOH X 150 2154 2154 HOH HOH . E 4 HOH X 151 2155 2155 HOH HOH . E 4 HOH X 152 2156 2156 HOH HOH . E 4 HOH X 153 2157 2157 HOH HOH . E 4 HOH X 154 2158 2158 HOH HOH . E 4 HOH X 155 2159 2159 HOH HOH . E 4 HOH X 156 2160 2160 HOH HOH . E 4 HOH X 157 2161 2161 HOH HOH . E 4 HOH X 158 2162 2162 HOH HOH . E 4 HOH X 159 2163 2163 HOH HOH . E 4 HOH X 160 2164 2164 HOH HOH . E 4 HOH X 161 2165 2165 HOH HOH . E 4 HOH X 162 2166 2166 HOH HOH . E 4 HOH X 163 2167 2167 HOH HOH . E 4 HOH X 164 2168 2168 HOH HOH . E 4 HOH X 165 2169 2169 HOH HOH . E 4 HOH X 166 2170 2170 HOH HOH . E 4 HOH X 167 2171 2171 HOH HOH . E 4 HOH X 168 2172 2172 HOH HOH . E 4 HOH X 169 2173 2173 HOH HOH . E 4 HOH X 170 2174 2174 HOH HOH . E 4 HOH X 171 2175 2175 HOH HOH . E 4 HOH X 172 2176 2176 HOH HOH . E 4 HOH X 173 2177 2177 HOH HOH . E 4 HOH X 174 2178 2178 HOH HOH . E 4 HOH X 175 2179 2179 HOH HOH . E 4 HOH X 176 2180 2180 HOH HOH . E 4 HOH X 177 2181 2181 HOH HOH . E 4 HOH X 178 2182 2182 HOH HOH . E 4 HOH X 179 2183 2183 HOH HOH . E 4 HOH X 180 2184 2184 HOH HOH . E 4 HOH X 181 2185 2185 HOH HOH . E 4 HOH X 182 2186 2186 HOH HOH . E 4 HOH X 183 2187 2187 HOH HOH . E 4 HOH X 184 2188 2188 HOH HOH . E 4 HOH X 185 2189 2189 HOH HOH . E 4 HOH X 186 2190 2190 HOH HOH . E 4 HOH X 187 2191 2191 HOH HOH . E 4 HOH X 188 2192 2192 HOH HOH . E 4 HOH X 189 2193 2193 HOH HOH . E 4 HOH X 190 2194 2194 HOH HOH . E 4 HOH X 191 2195 2195 HOH HOH . E 4 HOH X 192 2196 2196 HOH HOH . E 4 HOH X 193 2197 2197 HOH HOH . E 4 HOH X 194 2198 2198 HOH HOH . E 4 HOH X 195 2199 2199 HOH HOH . E 4 HOH X 196 2200 2200 HOH HOH . E 4 HOH X 197 2201 2201 HOH HOH . E 4 HOH X 198 2202 2202 HOH HOH . E 4 HOH X 199 2203 2203 HOH HOH . E 4 HOH X 200 2204 2204 HOH HOH . E 4 HOH X 201 2205 2205 HOH HOH . E 4 HOH X 202 2206 2206 HOH HOH . E 4 HOH X 203 2207 2207 HOH HOH . E 4 HOH X 204 2208 2208 HOH HOH . E 4 HOH X 205 2209 2209 HOH HOH . E 4 HOH X 206 2210 2210 HOH HOH . E 4 HOH X 207 2211 2211 HOH HOH . E 4 HOH X 208 2212 2212 HOH HOH . E 4 HOH X 209 2213 2213 HOH HOH . E 4 HOH X 210 2214 2214 HOH HOH . E 4 HOH X 211 2215 2215 HOH HOH . E 4 HOH X 212 2216 2216 HOH HOH . E 4 HOH X 213 2217 2217 HOH HOH . E 4 HOH X 214 2218 2218 HOH HOH . E 4 HOH X 215 2219 2219 HOH HOH . E 4 HOH X 216 2220 2220 HOH HOH . E 4 HOH X 217 2221 2221 HOH HOH . E 4 HOH X 218 2222 2222 HOH HOH . E 4 HOH X 219 2223 2223 HOH HOH . E 4 HOH X 220 2224 2224 HOH HOH . E 4 HOH X 221 2225 2225 HOH HOH . E 4 HOH X 222 2226 2226 HOH HOH . E 4 HOH X 223 2227 2227 HOH HOH . E 4 HOH X 224 2228 2228 HOH HOH . E 4 HOH X 225 2229 2229 HOH HOH . E 4 HOH X 226 2230 2230 HOH HOH . E 4 HOH X 227 2231 2231 HOH HOH . E 4 HOH X 228 2232 2232 HOH HOH . E 4 HOH X 229 2233 2233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 12.641 17.475 0.792 1 59.07 ? C1 GOL 1002 X 1 HETATM 2 O O1 GOL . . . D 3 13.971 17.677 0.363 1 59.37 ? O1 GOL 1002 X 1 HETATM 3 C C2 GOL . . . D 3 12.252 16.008 0.625 1 59.08 ? C2 GOL 1002 X 1 HETATM 4 O O2 GOL . . . D 3 11.021 15.774 1.278 1 59.12 ? O2 GOL 1002 X 1 HETATM 5 C C3 GOL . . . D 3 12.106 15.673 -0.856 1 58.85 ? C3 GOL 1002 X 1 HETATM 6 O O3 GOL . . . D 3 12.614 14.38 -1.102 1 58.13 ? O3 GOL 1002 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #