data_2ZYU
#
_model_server_result.job_id            HR8nDDvFTY3YS56i5PWH2w 
_model_server_result.datetime_utc      '2024-10-20 03:38:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zyu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    2ZYU 
#
_exptl.entry_id    2ZYU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.264 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.1 
_cell.angle_gamma         90 
_cell.entry_id            2ZYU 
_cell.length_a            152.867 
_cell.length_b            66.573 
_cell.length_c            42.557 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZYU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O13 P2 S' 
_chem_comp.formula_weight    507.264 
_chem_comp.id                PPS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S2 OS1 PPS sing 292 n n 
S2 OS2 PPS doub 293 n n 
S2 OS3 PPS doub 294 n n 
S2 O6P PPS sing 295 n n 
OS1 HO1 PPS sing 296 n n 
O6P P2 PPS sing 297 n n 
P2 O4P PPS doub 298 n n 
P2 O5P PPS sing 299 n n 
P2 O5' PPS sing 300 n n 
O5P HO5P PPS sing 301 n n 
O5' C5' PPS sing 302 n n 
C5' C4' PPS sing 303 n n 
C5' "H5'1" PPS sing 304 n n 
C5' "H5'2" PPS sing 305 n n 
C4' O4' PPS sing 306 n n 
C4' C3' PPS sing 307 n n 
C4' H4' PPS sing 308 n n 
O4' C1' PPS sing 309 n n 
C1' N9 PPS sing 310 n n 
C1' C2' PPS sing 311 n n 
C1' H1' PPS sing 312 n n 
N9 C4 PPS sing 313 n y 
N9 C8 PPS sing 314 n y 
C4 N3 PPS sing 315 n y 
C4 C5 PPS doub 316 n y 
N3 C2 PPS doub 317 n y 
C2 N1 PPS sing 318 n y 
C2 H2 PPS sing 319 n n 
N1 C6 PPS doub 320 n y 
C6 N6 PPS sing 321 n n 
C6 C5 PPS sing 322 n y 
N6 HN61 PPS sing 323 n n 
N6 HN62 PPS sing 324 n n 
C5 N7 PPS sing 325 n y 
N7 C8 PPS doub 326 n y 
C8 H8 PPS sing 327 n n 
C2' O2' PPS sing 328 n n 
C2' C3' PPS sing 329 n n 
C2' H2' PPS sing 330 n n 
O2' HO2' PPS sing 331 n n 
C3' O3' PPS sing 332 n n 
C3' H3' PPS sing 333 n n 
O3' P1 PPS sing 334 n n 
P1 O1P PPS sing 335 n n 
P1 O2P PPS sing 336 n n 
P1 O3P PPS doub 337 n n 
O1P HO1P PPS sing 338 n n 
O2P HO2P PPS sing 339 n n 
#
_atom_sites.entry_id                     2ZYU 
_atom_sites.fract_transf_matrix[1][1]    0.006542 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001888 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015021 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PPS X 1 501 501 PPS PPS . 
C 3 4NS X 1 859 859 4NS 4NS . 
D 4 GOL X 1 1001 1001 GOL GOL . 
E 4 GOL X 1 1002 1002 GOL GOL . 
F 5 HOH X 1 2001 2001 HOH HOH . 
F 5 HOH X 2 2002 2002 HOH HOH . 
F 5 HOH X 3 2003 2003 HOH HOH . 
F 5 HOH X 4 2005 2005 HOH HOH . 
F 5 HOH X 5 2006 2006 HOH HOH . 
F 5 HOH X 6 2007 2007 HOH HOH . 
F 5 HOH X 7 2008 2008 HOH HOH . 
F 5 HOH X 8 2009 2009 HOH HOH . 
F 5 HOH X 9 2010 2010 HOH HOH . 
F 5 HOH X 10 2011 2011 HOH HOH . 
F 5 HOH X 11 2012 2012 HOH HOH . 
F 5 HOH X 12 2013 2013 HOH HOH . 
F 5 HOH X 13 2014 2014 HOH HOH . 
F 5 HOH X 14 2015 2015 HOH HOH . 
F 5 HOH X 15 2016 2016 HOH HOH . 
F 5 HOH X 16 2017 2017 HOH HOH . 
F 5 HOH X 17 2018 2018 HOH HOH . 
F 5 HOH X 18 2019 2019 HOH HOH . 
F 5 HOH X 19 2020 2020 HOH HOH . 
F 5 HOH X 20 2021 2021 HOH HOH . 
F 5 HOH X 21 2022 2022 HOH HOH . 
F 5 HOH X 22 2023 2023 HOH HOH . 
F 5 HOH X 23 2024 2024 HOH HOH . 
F 5 HOH X 24 2025 2025 HOH HOH . 
F 5 HOH X 25 2026 2026 HOH HOH . 
F 5 HOH X 26 2027 2027 HOH HOH . 
F 5 HOH X 27 2028 2028 HOH HOH . 
F 5 HOH X 28 2029 2029 HOH HOH . 
F 5 HOH X 29 2030 2030 HOH HOH . 
F 5 HOH X 30 2031 2031 HOH HOH . 
F 5 HOH X 31 2032 2032 HOH HOH . 
F 5 HOH X 32 2033 2033 HOH HOH . 
F 5 HOH X 33 2034 2034 HOH HOH . 
F 5 HOH X 34 2035 2035 HOH HOH . 
F 5 HOH X 35 2037 2037 HOH HOH . 
F 5 HOH X 36 2038 2038 HOH HOH . 
F 5 HOH X 37 2039 2039 HOH HOH . 
F 5 HOH X 38 2040 2040 HOH HOH . 
F 5 HOH X 39 2041 2041 HOH HOH . 
F 5 HOH X 40 2042 2042 HOH HOH . 
F 5 HOH X 41 2043 2043 HOH HOH . 
F 5 HOH X 42 2044 2044 HOH HOH . 
F 5 HOH X 43 2045 2045 HOH HOH . 
F 5 HOH X 44 2046 2046 HOH HOH . 
F 5 HOH X 45 2047 2047 HOH HOH . 
F 5 HOH X 46 2048 2048 HOH HOH . 
F 5 HOH X 47 2050 2050 HOH HOH . 
F 5 HOH X 48 2051 2051 HOH HOH . 
F 5 HOH X 49 2052 2052 HOH HOH . 
F 5 HOH X 50 2053 2053 HOH HOH . 
F 5 HOH X 51 2054 2054 HOH HOH . 
F 5 HOH X 52 2055 2055 HOH HOH . 
F 5 HOH X 53 2056 2056 HOH HOH . 
F 5 HOH X 54 2057 2057 HOH HOH . 
F 5 HOH X 55 2058 2058 HOH HOH . 
F 5 HOH X 56 2059 2059 HOH HOH . 
F 5 HOH X 57 2060 2060 HOH HOH . 
F 5 HOH X 58 2061 2061 HOH HOH . 
F 5 HOH X 59 2062 2062 HOH HOH . 
F 5 HOH X 60 2063 2063 HOH HOH . 
F 5 HOH X 61 2064 2064 HOH HOH . 
F 5 HOH X 62 2066 2066 HOH HOH . 
F 5 HOH X 63 2067 2067 HOH HOH . 
F 5 HOH X 64 2068 2068 HOH HOH . 
F 5 HOH X 65 2069 2069 HOH HOH . 
F 5 HOH X 66 2070 2070 HOH HOH . 
F 5 HOH X 67 2071 2071 HOH HOH . 
F 5 HOH X 68 2072 2072 HOH HOH . 
F 5 HOH X 69 2073 2073 HOH HOH . 
F 5 HOH X 70 2074 2074 HOH HOH . 
F 5 HOH X 71 2075 2075 HOH HOH . 
F 5 HOH X 72 2076 2076 HOH HOH . 
F 5 HOH X 73 2077 2077 HOH HOH . 
F 5 HOH X 74 2078 2078 HOH HOH . 
F 5 HOH X 75 2079 2079 HOH HOH . 
F 5 HOH X 76 2080 2080 HOH HOH . 
F 5 HOH X 77 2082 2082 HOH HOH . 
F 5 HOH X 78 2083 2083 HOH HOH . 
F 5 HOH X 79 2084 2084 HOH HOH . 
F 5 HOH X 80 2086 2086 HOH HOH . 
F 5 HOH X 81 2087 2087 HOH HOH . 
F 5 HOH X 82 2088 2088 HOH HOH . 
F 5 HOH X 83 2089 2089 HOH HOH . 
F 5 HOH X 84 2090 2090 HOH HOH . 
F 5 HOH X 85 2091 2091 HOH HOH . 
F 5 HOH X 86 2092 2092 HOH HOH . 
F 5 HOH X 87 2093 2093 HOH HOH . 
F 5 HOH X 88 2094 2094 HOH HOH . 
F 5 HOH X 89 2095 2095 HOH HOH . 
F 5 HOH X 90 2096 2096 HOH HOH . 
F 5 HOH X 91 2097 2097 HOH HOH . 
F 5 HOH X 92 2098 2098 HOH HOH . 
F 5 HOH X 93 2099 2099 HOH HOH . 
F 5 HOH X 94 2100 2100 HOH HOH . 
F 5 HOH X 95 2101 2101 HOH HOH . 
F 5 HOH X 96 2102 2102 HOH HOH . 
F 5 HOH X 97 2103 2103 HOH HOH . 
F 5 HOH X 98 2105 2105 HOH HOH . 
F 5 HOH X 99 2106 2106 HOH HOH . 
F 5 HOH X 100 2107 2107 HOH HOH . 
F 5 HOH X 101 2108 2108 HOH HOH . 
F 5 HOH X 102 2109 2109 HOH HOH . 
F 5 HOH X 103 2110 2110 HOH HOH . 
F 5 HOH X 104 2111 2111 HOH HOH . 
F 5 HOH X 105 2112 2112 HOH HOH . 
F 5 HOH X 106 2113 2113 HOH HOH . 
F 5 HOH X 107 2114 2114 HOH HOH . 
F 5 HOH X 108 2115 2115 HOH HOH . 
F 5 HOH X 109 2116 2116 HOH HOH . 
F 5 HOH X 110 2117 2117 HOH HOH . 
F 5 HOH X 111 2118 2118 HOH HOH . 
F 5 HOH X 112 2120 2120 HOH HOH . 
F 5 HOH X 113 2121 2121 HOH HOH . 
F 5 HOH X 114 2122 2122 HOH HOH . 
F 5 HOH X 115 2123 2123 HOH HOH . 
F 5 HOH X 116 2124 2124 HOH HOH . 
F 5 HOH X 117 2125 2125 HOH HOH . 
F 5 HOH X 118 2126 2126 HOH HOH . 
F 5 HOH X 119 2128 2128 HOH HOH . 
F 5 HOH X 120 2129 2129 HOH HOH . 
F 5 HOH X 121 2130 2130 HOH HOH . 
F 5 HOH X 122 2132 2132 HOH HOH . 
F 5 HOH X 123 2133 2133 HOH HOH . 
F 5 HOH X 124 2134 2134 HOH HOH . 
F 5 HOH X 125 2135 2135 HOH HOH . 
F 5 HOH X 126 2136 2136 HOH HOH . 
F 5 HOH X 127 2137 2137 HOH HOH . 
F 5 HOH X 128 2138 2138 HOH HOH . 
F 5 HOH X 129 2139 2139 HOH HOH . 
F 5 HOH X 130 2140 2140 HOH HOH . 
F 5 HOH X 131 2142 2142 HOH HOH . 
F 5 HOH X 132 2144 2144 HOH HOH . 
F 5 HOH X 133 2148 2148 HOH HOH . 
F 5 HOH X 134 2149 2149 HOH HOH . 
F 5 HOH X 135 2150 2150 HOH HOH . 
F 5 HOH X 136 2151 2151 HOH HOH . 
F 5 HOH X 137 2152 2152 HOH HOH . 
F 5 HOH X 138 2153 2153 HOH HOH . 
F 5 HOH X 139 2155 2155 HOH HOH . 
F 5 HOH X 140 2156 2156 HOH HOH . 
F 5 HOH X 141 2158 2158 HOH HOH . 
F 5 HOH X 142 2160 2160 HOH HOH . 
F 5 HOH X 143 2162 2162 HOH HOH . 
F 5 HOH X 144 2163 2163 HOH HOH . 
F 5 HOH X 145 2164 2164 HOH HOH . 
F 5 HOH X 146 2165 2165 HOH HOH . 
F 5 HOH X 147 2166 2166 HOH HOH . 
F 5 HOH X 148 2167 2167 HOH HOH . 
F 5 HOH X 149 2168 2168 HOH HOH . 
F 5 HOH X 150 2169 2169 HOH HOH . 
F 5 HOH X 151 2170 2170 HOH HOH . 
F 5 HOH X 152 2171 2171 HOH HOH . 
F 5 HOH X 153 2172 2172 HOH HOH . 
F 5 HOH X 154 2173 2173 HOH HOH . 
F 5 HOH X 155 2174 2174 HOH HOH . 
F 5 HOH X 156 2175 2175 HOH HOH . 
F 5 HOH X 157 2177 2177 HOH HOH . 
F 5 HOH X 158 2178 2178 HOH HOH . 
F 5 HOH X 159 2179 2179 HOH HOH . 
F 5 HOH X 160 2180 2180 HOH HOH . 
F 5 HOH X 161 2181 2181 HOH HOH . 
F 5 HOH X 162 2182 2182 HOH HOH . 
F 5 HOH X 163 2183 2183 HOH HOH . 
F 5 HOH X 164 2184 2184 HOH HOH . 
F 5 HOH X 165 2185 2185 HOH HOH . 
F 5 HOH X 166 2186 2186 HOH HOH . 
F 5 HOH X 167 2187 2187 HOH HOH . 
F 5 HOH X 168 2188 2188 HOH HOH . 
F 5 HOH X 169 2189 2189 HOH HOH . 
F 5 HOH X 170 2190 2190 HOH HOH . 
F 5 HOH X 171 2191 2191 HOH HOH . 
F 5 HOH X 172 2192 2192 HOH HOH . 
F 5 HOH X 173 2193 2193 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S2 PPS . . . B 2 -29.028 -36.795 14.425 1 28.74 ? S2 PPS 501 X 1 
HETATM 2 O OS1 PPS . . . B 2 -30.49 -36.591 14.487 1 29.49 ? OS1 PPS 501 X 1 
HETATM 3 O OS2 PPS . . . B 2 -28.405 -36.231 13.226 1 27.1 ? OS2 PPS 501 X 1 
HETATM 4 O OS3 PPS . . . B 2 -28.709 -38.249 14.468 1 28.95 ? OS3 PPS 501 X 1 
HETATM 5 O O6P PPS . . . B 2 -28.387 -36.24 15.802 1 26.78 ? O6P PPS 501 X 1 
HETATM 6 P P2 PPS . . . B 2 -28.905 -34.856 16.384 1 25.4 ? P2 PPS 501 X 1 
HETATM 7 O O4P PPS . . . B 2 -30.057 -35.006 17.341 1 23.24 ? O4P PPS 501 X 1 
HETATM 8 O O5P PPS . . . B 2 -28.916 -33.874 15.233 1 26.08 ? O5P PPS 501 X 1 
HETATM 9 O O5' PPS . . . B 2 -27.675 -34.489 17.32 1 24.06 ? O5' PPS 501 X 1 
HETATM 10 C C5' PPS . . . B 2 -27.381 -35.332 18.41 1 21.74 ? C5' PPS 501 X 1 
HETATM 11 C C4' PPS . . . B 2 -26.542 -34.345 19.185 1 23.28 ? C4' PPS 501 X 1 
HETATM 12 O O4' PPS . . . B 2 -27.423 -33.391 19.781 1 24.08 ? O4' PPS 501 X 1 
HETATM 13 C C1' PPS . . . B 2 -27.266 -33.459 21.189 1 23.82 ? C1' PPS 501 X 1 
HETATM 14 N N9 PPS . . . B 2 -28.556 -33.281 21.86 1 24 ? N9 PPS 501 X 1 
HETATM 15 C C4 PPS . . . B 2 -28.79 -32.303 22.711 1 23.07 ? C4 PPS 501 X 1 
HETATM 16 N N3 PPS . . . B 2 -28.062 -31.264 23.194 1 24.06 ? N3 PPS 501 X 1 
HETATM 17 C C2 PPS . . . B 2 -28.576 -30.416 24.099 1 24.28 ? C2 PPS 501 X 1 
HETATM 18 N N1 PPS . . . B 2 -29.84 -30.521 24.545 1 23.79 ? N1 PPS 501 X 1 
HETATM 19 C C6 PPS . . . B 2 -30.666 -31.528 24.134 1 23.01 ? C6 PPS 501 X 1 
HETATM 20 N N6 PPS . . . B 2 -31.925 -31.635 24.601 1 23.21 ? N6 PPS 501 X 1 
HETATM 21 C C5 PPS . . . B 2 -30.17 -32.494 23.148 1 22.74 ? C5 PPS 501 X 1 
HETATM 22 N N7 PPS . . . B 2 -30.65 -33.577 22.53 1 22.1 ? N7 PPS 501 X 1 
HETATM 23 C C8 PPS . . . B 2 -29.66 -34.043 21.729 1 25.02 ? C8 PPS 501 X 1 
HETATM 24 C C2' PPS . . . B 2 -26.742 -34.867 21.44 1 22.81 ? C2' PPS 501 X 1 
HETATM 25 O O2' PPS . . . B 2 -26.129 -35.039 22.724 1 24.11 ? O2' PPS 501 X 1 
HETATM 26 C C3' PPS . . . B 2 -25.764 -35.002 20.303 1 22.73 ? C3' PPS 501 X 1 
HETATM 27 O O3' PPS . . . B 2 -24.681 -34.111 20.502 1 22.5 ? O3' PPS 501 X 1 
HETATM 28 P P1 PPS . . . B 2 -23.309 -34.627 21.157 1 23.88 ? P1 PPS 501 X 1 
HETATM 29 O O1P PPS . . . B 2 -22.918 -35.889 20.434 1 23.83 ? O1P PPS 501 X 1 
HETATM 30 O O2P PPS . . . B 2 -23.705 -34.856 22.603 1 23.92 ? O2P PPS 501 X 1 
HETATM 31 O O3P PPS . . . B 2 -22.373 -33.461 20.99 1 24.47 ? O3P PPS 501 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#