data_2ZYV
#
_model_server_result.job_id            v_sYSYpxYGzpeQqzzV1piw 
_model_server_result.datetime_utc      '2024-11-16 12:33:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1004}' 
#
_entry.id    2ZYV 
#
_exptl.entry_id    2ZYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.23 
_cell.angle_gamma         90 
_cell.entry_id            2ZYV 
_cell.length_a            155.241 
_cell.length_b            67.793 
_cell.length_c            42.904 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2ZYV 
_atom_sites.fract_transf_matrix[1][1]    0.006442 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001754 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014751 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024156 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PPS X 1 1501 1501 PPS PPS . 
C 3 NPO X 1 1601 1601 NPO NPO . 
D 3 NPO X 1 1602 1602 NPO NPO . 
E 4 GOL X 1 1001 1001 GOL GOL . 
F 4 GOL X 1 1002 1002 GOL GOL . 
G 4 GOL X 1 1003 1003 GOL GOL . 
H 4 GOL X 1 1004 1004 GOL GOL . 
I 4 GOL X 1 1005 1005 GOL GOL . 
J 4 GOL X 1 1006 1006 GOL GOL . 
K 5 HOH X 1 2001 2001 HOH HOH . 
K 5 HOH X 2 2002 2002 HOH HOH . 
K 5 HOH X 3 2003 2003 HOH HOH . 
K 5 HOH X 4 2004 2004 HOH HOH . 
K 5 HOH X 5 2005 2005 HOH HOH . 
K 5 HOH X 6 2006 2006 HOH HOH . 
K 5 HOH X 7 2007 2007 HOH HOH . 
K 5 HOH X 8 2008 2008 HOH HOH . 
K 5 HOH X 9 2009 2009 HOH HOH . 
K 5 HOH X 10 2010 2010 HOH HOH . 
K 5 HOH X 11 2011 2011 HOH HOH . 
K 5 HOH X 12 2012 2012 HOH HOH . 
K 5 HOH X 13 2013 2013 HOH HOH . 
K 5 HOH X 14 2014 2014 HOH HOH . 
K 5 HOH X 15 2015 2015 HOH HOH . 
K 5 HOH X 16 2016 2016 HOH HOH . 
K 5 HOH X 17 2017 2017 HOH HOH . 
K 5 HOH X 18 2018 2018 HOH HOH . 
K 5 HOH X 19 2019 2019 HOH HOH . 
K 5 HOH X 20 2020 2020 HOH HOH . 
K 5 HOH X 21 2022 2022 HOH HOH . 
K 5 HOH X 22 2023 2023 HOH HOH . 
K 5 HOH X 23 2024 2024 HOH HOH . 
K 5 HOH X 24 2025 2025 HOH HOH . 
K 5 HOH X 25 2026 2026 HOH HOH . 
K 5 HOH X 26 2027 2027 HOH HOH . 
K 5 HOH X 27 2028 2028 HOH HOH . 
K 5 HOH X 28 2029 2029 HOH HOH . 
K 5 HOH X 29 2030 2030 HOH HOH . 
K 5 HOH X 30 2031 2031 HOH HOH . 
K 5 HOH X 31 2032 2032 HOH HOH . 
K 5 HOH X 32 2033 2033 HOH HOH . 
K 5 HOH X 33 2034 2034 HOH HOH . 
K 5 HOH X 34 2035 2035 HOH HOH . 
K 5 HOH X 35 2036 2036 HOH HOH . 
K 5 HOH X 36 2037 2037 HOH HOH . 
K 5 HOH X 37 2038 2038 HOH HOH . 
K 5 HOH X 38 2039 2039 HOH HOH . 
K 5 HOH X 39 2040 2040 HOH HOH . 
K 5 HOH X 40 2041 2041 HOH HOH . 
K 5 HOH X 41 2042 2042 HOH HOH . 
K 5 HOH X 42 2043 2043 HOH HOH . 
K 5 HOH X 43 2045 2045 HOH HOH . 
K 5 HOH X 44 2046 2046 HOH HOH . 
K 5 HOH X 45 2047 2047 HOH HOH . 
K 5 HOH X 46 2048 2048 HOH HOH . 
K 5 HOH X 47 2049 2049 HOH HOH . 
K 5 HOH X 48 2050 2050 HOH HOH . 
K 5 HOH X 49 2051 2051 HOH HOH . 
K 5 HOH X 50 2052 2052 HOH HOH . 
K 5 HOH X 51 2053 2053 HOH HOH . 
K 5 HOH X 52 2054 2054 HOH HOH . 
K 5 HOH X 53 2055 2055 HOH HOH . 
K 5 HOH X 54 2056 2056 HOH HOH . 
K 5 HOH X 55 2057 2057 HOH HOH . 
K 5 HOH X 56 2058 2058 HOH HOH . 
K 5 HOH X 57 2059 2059 HOH HOH . 
K 5 HOH X 58 2060 2060 HOH HOH . 
K 5 HOH X 59 2061 2061 HOH HOH . 
K 5 HOH X 60 2063 2063 HOH HOH . 
K 5 HOH X 61 2064 2064 HOH HOH . 
K 5 HOH X 62 2065 2065 HOH HOH . 
K 5 HOH X 63 2066 2066 HOH HOH . 
K 5 HOH X 64 2067 2067 HOH HOH . 
K 5 HOH X 65 2069 2069 HOH HOH . 
K 5 HOH X 66 2070 2070 HOH HOH . 
K 5 HOH X 67 2071 2071 HOH HOH . 
K 5 HOH X 68 2072 2072 HOH HOH . 
K 5 HOH X 69 2073 2073 HOH HOH . 
K 5 HOH X 70 2074 2074 HOH HOH . 
K 5 HOH X 71 2075 2075 HOH HOH . 
K 5 HOH X 72 2076 2076 HOH HOH . 
K 5 HOH X 73 2077 2077 HOH HOH . 
K 5 HOH X 74 2078 2078 HOH HOH . 
K 5 HOH X 75 2079 2079 HOH HOH . 
K 5 HOH X 76 2080 2080 HOH HOH . 
K 5 HOH X 77 2081 2081 HOH HOH . 
K 5 HOH X 78 2082 2082 HOH HOH . 
K 5 HOH X 79 2083 2083 HOH HOH . 
K 5 HOH X 80 2084 2084 HOH HOH . 
K 5 HOH X 81 2085 2085 HOH HOH . 
K 5 HOH X 82 2086 2086 HOH HOH . 
K 5 HOH X 83 2087 2087 HOH HOH . 
K 5 HOH X 84 2088 2088 HOH HOH . 
K 5 HOH X 85 2090 2090 HOH HOH . 
K 5 HOH X 86 2091 2091 HOH HOH . 
K 5 HOH X 87 2092 2092 HOH HOH . 
K 5 HOH X 88 2093 2093 HOH HOH . 
K 5 HOH X 89 2094 2094 HOH HOH . 
K 5 HOH X 90 2095 2095 HOH HOH . 
K 5 HOH X 91 2096 2096 HOH HOH . 
K 5 HOH X 92 2097 2097 HOH HOH . 
K 5 HOH X 93 2098 2098 HOH HOH . 
K 5 HOH X 94 2099 2099 HOH HOH . 
K 5 HOH X 95 2100 2100 HOH HOH . 
K 5 HOH X 96 2101 2101 HOH HOH . 
K 5 HOH X 97 2103 2103 HOH HOH . 
K 5 HOH X 98 2104 2104 HOH HOH . 
K 5 HOH X 99 2106 2106 HOH HOH . 
K 5 HOH X 100 2107 2107 HOH HOH . 
K 5 HOH X 101 2108 2108 HOH HOH . 
K 5 HOH X 102 2109 2109 HOH HOH . 
K 5 HOH X 103 2110 2110 HOH HOH . 
K 5 HOH X 104 2111 2111 HOH HOH . 
K 5 HOH X 105 2114 2114 HOH HOH . 
K 5 HOH X 106 2115 2115 HOH HOH . 
K 5 HOH X 107 2116 2116 HOH HOH . 
K 5 HOH X 108 2117 2117 HOH HOH . 
K 5 HOH X 109 2118 2118 HOH HOH . 
K 5 HOH X 110 2119 2119 HOH HOH . 
K 5 HOH X 111 2120 2120 HOH HOH . 
K 5 HOH X 112 2121 2121 HOH HOH . 
K 5 HOH X 113 2124 2124 HOH HOH . 
K 5 HOH X 114 2125 2125 HOH HOH . 
K 5 HOH X 115 2128 2128 HOH HOH . 
K 5 HOH X 116 2129 2129 HOH HOH . 
K 5 HOH X 117 2130 2130 HOH HOH . 
K 5 HOH X 118 2131 2131 HOH HOH . 
K 5 HOH X 119 2132 2132 HOH HOH . 
K 5 HOH X 120 2133 2133 HOH HOH . 
K 5 HOH X 121 2134 2134 HOH HOH . 
K 5 HOH X 122 2135 2135 HOH HOH . 
K 5 HOH X 123 2136 2136 HOH HOH . 
K 5 HOH X 124 2137 2137 HOH HOH . 
K 5 HOH X 125 2138 2138 HOH HOH . 
K 5 HOH X 126 2140 2140 HOH HOH . 
K 5 HOH X 127 2141 2141 HOH HOH . 
K 5 HOH X 128 2142 2142 HOH HOH . 
K 5 HOH X 129 2143 2143 HOH HOH . 
K 5 HOH X 130 2144 2144 HOH HOH . 
K 5 HOH X 131 2146 2146 HOH HOH . 
K 5 HOH X 132 2147 2147 HOH HOH . 
K 5 HOH X 133 2148 2148 HOH HOH . 
K 5 HOH X 134 2149 2149 HOH HOH . 
K 5 HOH X 135 2150 2150 HOH HOH . 
K 5 HOH X 136 2151 2151 HOH HOH . 
K 5 HOH X 137 2152 2152 HOH HOH . 
K 5 HOH X 138 2153 2153 HOH HOH . 
K 5 HOH X 139 2155 2155 HOH HOH . 
K 5 HOH X 140 2157 2157 HOH HOH . 
K 5 HOH X 141 2158 2158 HOH HOH . 
K 5 HOH X 142 2159 2159 HOH HOH . 
K 5 HOH X 143 2160 2160 HOH HOH . 
K 5 HOH X 144 2161 2161 HOH HOH . 
K 5 HOH X 145 2162 2162 HOH HOH . 
K 5 HOH X 146 2163 2163 HOH HOH . 
K 5 HOH X 147 2166 2166 HOH HOH . 
K 5 HOH X 148 2167 2167 HOH HOH . 
K 5 HOH X 149 2168 2168 HOH HOH . 
K 5 HOH X 150 2169 2169 HOH HOH . 
K 5 HOH X 151 2170 2170 HOH HOH . 
K 5 HOH X 152 2173 2173 HOH HOH . 
K 5 HOH X 153 2175 2175 HOH HOH . 
K 5 HOH X 154 2176 2176 HOH HOH . 
K 5 HOH X 155 2177 2177 HOH HOH . 
K 5 HOH X 156 2178 2178 HOH HOH . 
K 5 HOH X 157 2179 2179 HOH HOH . 
K 5 HOH X 158 2180 2180 HOH HOH . 
K 5 HOH X 159 2181 2181 HOH HOH . 
K 5 HOH X 160 2182 2182 HOH HOH . 
K 5 HOH X 161 2183 2183 HOH HOH . 
K 5 HOH X 162 2184 2184 HOH HOH . 
K 5 HOH X 163 2185 2185 HOH HOH . 
K 5 HOH X 164 2186 2186 HOH HOH . 
K 5 HOH X 165 2187 2187 HOH HOH . 
K 5 HOH X 166 2188 2188 HOH HOH . 
K 5 HOH X 167 2189 2189 HOH HOH . 
K 5 HOH X 168 2202 2202 HOH HOH . 
K 5 HOH X 169 2203 2203 HOH HOH . 
K 5 HOH X 170 2205 2205 HOH HOH . 
K 5 HOH X 171 2206 2206 HOH HOH . 
K 5 HOH X 172 2207 2207 HOH HOH . 
K 5 HOH X 173 2208 2208 HOH HOH . 
K 5 HOH X 174 2209 2209 HOH HOH . 
K 5 HOH X 175 2210 2210 HOH HOH . 
K 5 HOH X 176 2211 2211 HOH HOH . 
K 5 HOH X 177 2212 2212 HOH HOH . 
K 5 HOH X 178 2213 2213 HOH HOH . 
K 5 HOH X 179 2214 2214 HOH HOH . 
K 5 HOH X 180 2215 2215 HOH HOH . 
K 5 HOH X 181 2216 2216 HOH HOH . 
K 5 HOH X 182 2217 2217 HOH HOH . 
K 5 HOH X 183 2218 2218 HOH HOH . 
K 5 HOH X 184 2219 2219 HOH HOH . 
K 5 HOH X 185 2220 2220 HOH HOH . 
K 5 HOH X 186 2223 2223 HOH HOH . 
K 5 HOH X 187 2224 2224 HOH HOH . 
K 5 HOH X 188 2225 2225 HOH HOH . 
K 5 HOH X 189 2227 2227 HOH HOH . 
K 5 HOH X 190 2228 2228 HOH HOH . 
K 5 HOH X 191 2229 2229 HOH HOH . 
K 5 HOH X 192 2231 2231 HOH HOH . 
K 5 HOH X 193 2232 2232 HOH HOH . 
K 5 HOH X 194 2233 2233 HOH HOH . 
K 5 HOH X 195 2234 2234 HOH HOH . 
K 5 HOH X 196 2235 2235 HOH HOH . 
K 5 HOH X 197 2236 2236 HOH HOH . 
K 5 HOH X 198 2238 2238 HOH HOH . 
K 5 HOH X 199 2239 2239 HOH HOH . 
K 5 HOH X 200 2240 2240 HOH HOH . 
K 5 HOH X 201 2242 2242 HOH HOH . 
K 5 HOH X 202 2244 2244 HOH HOH . 
K 5 HOH X 203 2245 2245 HOH HOH . 
K 5 HOH X 204 2246 2246 HOH HOH . 
K 5 HOH X 205 2247 2247 HOH HOH . 
K 5 HOH X 206 2248 2248 HOH HOH . 
K 5 HOH X 207 2249 2249 HOH HOH . 
K 5 HOH X 208 2250 2250 HOH HOH . 
K 5 HOH X 209 2252 2252 HOH HOH . 
K 5 HOH X 210 2253 2253 HOH HOH . 
K 5 HOH X 211 2254 2254 HOH HOH . 
K 5 HOH X 212 2255 2255 HOH HOH . 
K 5 HOH X 213 2257 2257 HOH HOH . 
K 5 HOH X 214 2258 2258 HOH HOH . 
K 5 HOH X 215 2260 2260 HOH HOH . 
K 5 HOH X 216 2261 2261 HOH HOH . 
K 5 HOH X 217 2262 2262 HOH HOH . 
K 5 HOH X 218 2263 2263 HOH HOH . 
K 5 HOH X 219 2264 2264 HOH HOH . 
K 5 HOH X 220 2265 2265 HOH HOH . 
K 5 HOH X 221 2266 2266 HOH HOH . 
K 5 HOH X 222 2267 2267 HOH HOH . 
K 5 HOH X 223 2300 2300 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 -25.534 -19.274 16.783 1 53.53 ? C1 GOL 1004 X 1 
HETATM 2 O O1 GOL . . . H 4 -24.517 -19.125 17.747 1 52.73 ? O1 GOL 1004 X 1 
HETATM 3 C C2 GOL . . . H 4 -25.669 -18.072 15.858 1 53.47 ? C2 GOL 1004 X 1 
HETATM 4 O O2 GOL . . . H 4 -24.406 -17.653 15.399 1 54.78 ? O2 GOL 1004 X 1 
HETATM 5 C C3 GOL . . . H 4 -26.376 -16.94 16.587 1 53.31 ? C3 GOL 1004 X 1 
HETATM 6 O O3 GOL . . . H 4 -27.739 -16.953 16.232 1 51.39 ? O3 GOL 1004 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#