data_2ZYW
#
_model_server_result.job_id            r8TfkPU-J-klShzCxnwdAA 
_model_server_result.datetime_utc      '2024-11-05 23:35:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zyw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    2ZYW 
#
_exptl.entry_id    2ZYW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              139.109 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            P-NITROPHENOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.25 
_cell.angle_gamma         90 
_cell.entry_id            2ZYW 
_cell.length_a            155.313 
_cell.length_b            67.838 
_cell.length_c            42.867 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZYW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C6 H5 N O3' 
_chem_comp.formula_weight    139.109 
_chem_comp.id                NPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              P-NITROPHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NPO doub 294 n y 
C1 C6 NPO sing 295 n y 
C1 N1 NPO sing 296 n n 
C2 C3 NPO sing 297 n y 
C2 H2 NPO sing 298 n n 
C3 C4 NPO doub 299 n y 
C3 H3 NPO sing 300 n n 
C4 C5 NPO sing 301 n y 
C4 OH NPO sing 302 n n 
C5 C6 NPO doub 303 n y 
C5 H5 NPO sing 304 n n 
C6 H6 NPO sing 305 n n 
OH HO NPO sing 306 n n 
N1 O2 NPO sing 307 n n 
N1 O3 NPO doub 308 n n 
#
_atom_sites.entry_id                     2ZYW 
_atom_sites.fract_transf_matrix[1][1]    0.006439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001755 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024179 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A3P X 1 501 501 A3P A3P . 
C 3 NPO X 1 601 601 NPO NPO . 
D 3 NPO X 1 602 602 NPO NPO . 
E 4 GOL X 1 1001 1001 GOL GOL . 
F 4 GOL X 1 1002 1002 GOL GOL . 
G 4 GOL X 1 1003 1003 GOL GOL . 
H 5 HOH X 1 2001 2001 HOH HOH . 
H 5 HOH X 2 2002 2002 HOH HOH . 
H 5 HOH X 3 2003 2003 HOH HOH . 
H 5 HOH X 4 2004 2004 HOH HOH . 
H 5 HOH X 5 2005 2005 HOH HOH . 
H 5 HOH X 6 2006 2006 HOH HOH . 
H 5 HOH X 7 2007 2007 HOH HOH . 
H 5 HOH X 8 2008 2008 HOH HOH . 
H 5 HOH X 9 2009 2009 HOH HOH . 
H 5 HOH X 10 2010 2010 HOH HOH . 
H 5 HOH X 11 2011 2011 HOH HOH . 
H 5 HOH X 12 2012 2012 HOH HOH . 
H 5 HOH X 13 2013 2013 HOH HOH . 
H 5 HOH X 14 2014 2014 HOH HOH . 
H 5 HOH X 15 2015 2015 HOH HOH . 
H 5 HOH X 16 2016 2016 HOH HOH . 
H 5 HOH X 17 2017 2017 HOH HOH . 
H 5 HOH X 18 2018 2018 HOH HOH . 
H 5 HOH X 19 2019 2019 HOH HOH . 
H 5 HOH X 20 2020 2020 HOH HOH . 
H 5 HOH X 21 2021 2021 HOH HOH . 
H 5 HOH X 22 2022 2022 HOH HOH . 
H 5 HOH X 23 2023 2023 HOH HOH . 
H 5 HOH X 24 2024 2024 HOH HOH . 
H 5 HOH X 25 2025 2025 HOH HOH . 
H 5 HOH X 26 2026 2026 HOH HOH . 
H 5 HOH X 27 2027 2027 HOH HOH . 
H 5 HOH X 28 2028 2028 HOH HOH . 
H 5 HOH X 29 2029 2029 HOH HOH . 
H 5 HOH X 30 2030 2030 HOH HOH . 
H 5 HOH X 31 2031 2031 HOH HOH . 
H 5 HOH X 32 2032 2032 HOH HOH . 
H 5 HOH X 33 2033 2033 HOH HOH . 
H 5 HOH X 34 2034 2034 HOH HOH . 
H 5 HOH X 35 2035 2035 HOH HOH . 
H 5 HOH X 36 2036 2036 HOH HOH . 
H 5 HOH X 37 2037 2037 HOH HOH . 
H 5 HOH X 38 2038 2038 HOH HOH . 
H 5 HOH X 39 2039 2039 HOH HOH . 
H 5 HOH X 40 2040 2040 HOH HOH . 
H 5 HOH X 41 2041 2041 HOH HOH . 
H 5 HOH X 42 2042 2042 HOH HOH . 
H 5 HOH X 43 2043 2043 HOH HOH . 
H 5 HOH X 44 2044 2044 HOH HOH . 
H 5 HOH X 45 2045 2045 HOH HOH . 
H 5 HOH X 46 2046 2046 HOH HOH . 
H 5 HOH X 47 2047 2047 HOH HOH . 
H 5 HOH X 48 2048 2048 HOH HOH . 
H 5 HOH X 49 2050 2050 HOH HOH . 
H 5 HOH X 50 2051 2051 HOH HOH . 
H 5 HOH X 51 2052 2052 HOH HOH . 
H 5 HOH X 52 2053 2053 HOH HOH . 
H 5 HOH X 53 2054 2054 HOH HOH . 
H 5 HOH X 54 2055 2055 HOH HOH . 
H 5 HOH X 55 2056 2056 HOH HOH . 
H 5 HOH X 56 2057 2057 HOH HOH . 
H 5 HOH X 57 2058 2058 HOH HOH . 
H 5 HOH X 58 2059 2059 HOH HOH . 
H 5 HOH X 59 2060 2060 HOH HOH . 
H 5 HOH X 60 2061 2061 HOH HOH . 
H 5 HOH X 61 2062 2062 HOH HOH . 
H 5 HOH X 62 2063 2063 HOH HOH . 
H 5 HOH X 63 2064 2064 HOH HOH . 
H 5 HOH X 64 2065 2065 HOH HOH . 
H 5 HOH X 65 2066 2066 HOH HOH . 
H 5 HOH X 66 2067 2067 HOH HOH . 
H 5 HOH X 67 2068 2068 HOH HOH . 
H 5 HOH X 68 2070 2070 HOH HOH . 
H 5 HOH X 69 2071 2071 HOH HOH . 
H 5 HOH X 70 2072 2072 HOH HOH . 
H 5 HOH X 71 2073 2073 HOH HOH . 
H 5 HOH X 72 2074 2074 HOH HOH . 
H 5 HOH X 73 2075 2075 HOH HOH . 
H 5 HOH X 74 2076 2076 HOH HOH . 
H 5 HOH X 75 2078 2078 HOH HOH . 
H 5 HOH X 76 2079 2079 HOH HOH . 
H 5 HOH X 77 2080 2080 HOH HOH . 
H 5 HOH X 78 2081 2081 HOH HOH . 
H 5 HOH X 79 2082 2082 HOH HOH . 
H 5 HOH X 80 2083 2083 HOH HOH . 
H 5 HOH X 81 2084 2084 HOH HOH . 
H 5 HOH X 82 2085 2085 HOH HOH . 
H 5 HOH X 83 2086 2086 HOH HOH . 
H 5 HOH X 84 2087 2087 HOH HOH . 
H 5 HOH X 85 2088 2088 HOH HOH . 
H 5 HOH X 86 2089 2089 HOH HOH . 
H 5 HOH X 87 2090 2090 HOH HOH . 
H 5 HOH X 88 2091 2091 HOH HOH . 
H 5 HOH X 89 2092 2092 HOH HOH . 
H 5 HOH X 90 2093 2093 HOH HOH . 
H 5 HOH X 91 2094 2094 HOH HOH . 
H 5 HOH X 92 2095 2095 HOH HOH . 
H 5 HOH X 93 2096 2096 HOH HOH . 
H 5 HOH X 94 2097 2097 HOH HOH . 
H 5 HOH X 95 2098 2098 HOH HOH . 
H 5 HOH X 96 2099 2099 HOH HOH . 
H 5 HOH X 97 2100 2100 HOH HOH . 
H 5 HOH X 98 2101 2101 HOH HOH . 
H 5 HOH X 99 2102 2102 HOH HOH . 
H 5 HOH X 100 2103 2103 HOH HOH . 
H 5 HOH X 101 2104 2104 HOH HOH . 
H 5 HOH X 102 2105 2105 HOH HOH . 
H 5 HOH X 103 2106 2106 HOH HOH . 
H 5 HOH X 104 2107 2107 HOH HOH . 
H 5 HOH X 105 2108 2108 HOH HOH . 
H 5 HOH X 106 2109 2109 HOH HOH . 
H 5 HOH X 107 2110 2110 HOH HOH . 
H 5 HOH X 108 2111 2111 HOH HOH . 
H 5 HOH X 109 2112 2112 HOH HOH . 
H 5 HOH X 110 2113 2113 HOH HOH . 
H 5 HOH X 111 2114 2114 HOH HOH . 
H 5 HOH X 112 2115 2115 HOH HOH . 
H 5 HOH X 113 2116 2116 HOH HOH . 
H 5 HOH X 114 2117 2117 HOH HOH . 
H 5 HOH X 115 2118 2118 HOH HOH . 
H 5 HOH X 116 2120 2120 HOH HOH . 
H 5 HOH X 117 2121 2121 HOH HOH . 
H 5 HOH X 118 2122 2122 HOH HOH . 
H 5 HOH X 119 2126 2126 HOH HOH . 
H 5 HOH X 120 2127 2127 HOH HOH . 
H 5 HOH X 121 2128 2128 HOH HOH . 
H 5 HOH X 122 2129 2129 HOH HOH . 
H 5 HOH X 123 2130 2130 HOH HOH . 
H 5 HOH X 124 2131 2131 HOH HOH . 
H 5 HOH X 125 2132 2132 HOH HOH . 
H 5 HOH X 126 2135 2135 HOH HOH . 
H 5 HOH X 127 2136 2136 HOH HOH . 
H 5 HOH X 128 2137 2137 HOH HOH . 
H 5 HOH X 129 2138 2138 HOH HOH . 
H 5 HOH X 130 2139 2139 HOH HOH . 
H 5 HOH X 131 2141 2141 HOH HOH . 
H 5 HOH X 132 2142 2142 HOH HOH . 
H 5 HOH X 133 2143 2143 HOH HOH . 
H 5 HOH X 134 2144 2144 HOH HOH . 
H 5 HOH X 135 2146 2146 HOH HOH . 
H 5 HOH X 136 2147 2147 HOH HOH . 
H 5 HOH X 137 2148 2148 HOH HOH . 
H 5 HOH X 138 2149 2149 HOH HOH . 
H 5 HOH X 139 2150 2150 HOH HOH . 
H 5 HOH X 140 2151 2151 HOH HOH . 
H 5 HOH X 141 2152 2152 HOH HOH . 
H 5 HOH X 142 2153 2153 HOH HOH . 
H 5 HOH X 143 2154 2154 HOH HOH . 
H 5 HOH X 144 2155 2155 HOH HOH . 
H 5 HOH X 145 2156 2156 HOH HOH . 
H 5 HOH X 146 2157 2157 HOH HOH . 
H 5 HOH X 147 2158 2158 HOH HOH . 
H 5 HOH X 148 2159 2159 HOH HOH . 
H 5 HOH X 149 2160 2160 HOH HOH . 
H 5 HOH X 150 2161 2161 HOH HOH . 
H 5 HOH X 151 2162 2162 HOH HOH . 
H 5 HOH X 152 2163 2163 HOH HOH . 
H 5 HOH X 153 2164 2164 HOH HOH . 
H 5 HOH X 154 2165 2165 HOH HOH . 
H 5 HOH X 155 2166 2166 HOH HOH . 
H 5 HOH X 156 2167 2167 HOH HOH . 
H 5 HOH X 157 2168 2168 HOH HOH . 
H 5 HOH X 158 2169 2169 HOH HOH . 
H 5 HOH X 159 2170 2170 HOH HOH . 
H 5 HOH X 160 2171 2171 HOH HOH . 
H 5 HOH X 161 2172 2172 HOH HOH . 
H 5 HOH X 162 2173 2173 HOH HOH . 
H 5 HOH X 163 2175 2175 HOH HOH . 
H 5 HOH X 164 2176 2176 HOH HOH . 
H 5 HOH X 165 2177 2177 HOH HOH . 
H 5 HOH X 166 2178 2178 HOH HOH . 
H 5 HOH X 167 2179 2179 HOH HOH . 
H 5 HOH X 168 2180 2180 HOH HOH . 
H 5 HOH X 169 2181 2181 HOH HOH . 
H 5 HOH X 170 2182 2182 HOH HOH . 
H 5 HOH X 171 2183 2183 HOH HOH . 
H 5 HOH X 172 2184 2184 HOH HOH . 
H 5 HOH X 173 2185 2185 HOH HOH . 
H 5 HOH X 174 2186 2186 HOH HOH . 
H 5 HOH X 175 2187 2187 HOH HOH . 
H 5 HOH X 176 2188 2188 HOH HOH . 
H 5 HOH X 177 2189 2189 HOH HOH . 
H 5 HOH X 178 2190 2190 HOH HOH . 
H 5 HOH X 179 2191 2191 HOH HOH . 
H 5 HOH X 180 2192 2192 HOH HOH . 
H 5 HOH X 181 2193 2193 HOH HOH . 
H 5 HOH X 182 2194 2194 HOH HOH . 
H 5 HOH X 183 2195 2195 HOH HOH . 
H 5 HOH X 184 2202 2202 HOH HOH . 
H 5 HOH X 185 2204 2204 HOH HOH . 
H 5 HOH X 186 2205 2205 HOH HOH . 
H 5 HOH X 187 2206 2206 HOH HOH . 
H 5 HOH X 188 2210 2210 HOH HOH . 
H 5 HOH X 189 2211 2211 HOH HOH . 
H 5 HOH X 190 2212 2212 HOH HOH . 
H 5 HOH X 191 2214 2214 HOH HOH . 
H 5 HOH X 192 2215 2215 HOH HOH . 
H 5 HOH X 193 2216 2216 HOH HOH . 
H 5 HOH X 194 2217 2217 HOH HOH . 
H 5 HOH X 195 2218 2218 HOH HOH . 
H 5 HOH X 196 2219 2219 HOH HOH . 
H 5 HOH X 197 2220 2220 HOH HOH . 
H 5 HOH X 198 2221 2221 HOH HOH . 
H 5 HOH X 199 2222 2222 HOH HOH . 
H 5 HOH X 200 2226 2226 HOH HOH . 
H 5 HOH X 201 2229 2229 HOH HOH . 
H 5 HOH X 202 2231 2231 HOH HOH . 
H 5 HOH X 203 2233 2233 HOH HOH . 
H 5 HOH X 204 2234 2234 HOH HOH . 
H 5 HOH X 205 2238 2238 HOH HOH . 
H 5 HOH X 206 2239 2239 HOH HOH . 
H 5 HOH X 207 2240 2240 HOH HOH . 
H 5 HOH X 208 2241 2241 HOH HOH . 
H 5 HOH X 209 2243 2243 HOH HOH . 
H 5 HOH X 210 2247 2247 HOH HOH . 
H 5 HOH X 211 2248 2248 HOH HOH . 
H 5 HOH X 212 2249 2249 HOH HOH . 
H 5 HOH X 213 2250 2250 HOH HOH . 
H 5 HOH X 214 2255 2255 HOH HOH . 
H 5 HOH X 215 2257 2257 HOH HOH . 
H 5 HOH X 216 2258 2258 HOH HOH . 
H 5 HOH X 217 2259 2259 HOH HOH . 
H 5 HOH X 218 2260 2260 HOH HOH . 
H 5 HOH X 219 2261 2261 HOH HOH . 
H 5 HOH X 220 2262 2262 HOH HOH . 
H 5 HOH X 221 2265 2265 HOH HOH . 
H 5 HOH X 222 2266 2266 HOH HOH . 
H 5 HOH X 223 2270 2270 HOH HOH . 
H 5 HOH X 224 2272 2272 HOH HOH . 
H 5 HOH X 225 2273 2273 HOH HOH . 
H 5 HOH X 226 2274 2274 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NPO . . . C 3 -29.063 -43.257 11.923 1 24.5 ? C1 NPO 601 X 1 
HETATM 2 C C2 NPO . . . C 3 -30.079 -42.949 12.834 1 23.93 ? C2 NPO 601 X 1 
HETATM 3 C C3 NPO . . . C 3 -30.482 -41.628 13.008 1 23.52 ? C3 NPO 601 X 1 
HETATM 4 C C4 NPO . . . C 3 -29.868 -40.616 12.268 1 22.9 ? C4 NPO 601 X 1 
HETATM 5 C C5 NPO . . . C 3 -28.854 -40.912 11.356 1 23.63 ? C5 NPO 601 X 1 
HETATM 6 C C6 NPO . . . C 3 -28.455 -42.238 11.183 1 24.12 ? C6 NPO 601 X 1 
HETATM 7 O OH NPO . . . C 3 -30.185 -39.324 12.524 1 22.88 ? OH NPO 601 X 1 
HETATM 8 N N1 NPO . . . C 3 -28.648 -44.588 11.755 1 25.25 ? N1 NPO 601 X 1 
HETATM 9 O O2 NPO . . . C 3 -27.807 -44.873 10.902 1 25.52 ? O2 NPO 601 X 1 
HETATM 10 O O3 NPO . . . C 3 -29.11 -45.474 12.467 1 26.33 ? O3 NPO 601 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           220 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#