data_2ZZ3 # _model_server_result.job_id BaLMTejpGo_G-IbYfrB5fA _model_server_result.datetime_utc '2024-10-17 11:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":314}' # _entry.id 2ZZ3 # _exptl.entry_id 2ZZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.4 _cell.angle_gamma 90 _cell.entry_id 2ZZ3 _cell.length_a 58.076 _cell.length_b 73.769 _cell.length_c 59.152 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 75 A LYS 72 1_555 C C6 6CN . A 6CN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 B NZ LYS 75 B LYS 72 1_555 G C6 6CN . B 6CN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 2ZZ3 _atom_sites.fract_transf_matrix[1][1] 0.017219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6CN A 1 301 301 6CN 6CN . D 3 GOL A 1 311 311 GOL GOL . E 3 GOL A 1 312 312 GOL GOL . F 3 GOL A 1 314 314 GOL GOL . G 2 6CN B 1 302 302 6CN 6CN . H 3 GOL B 1 313 313 GOL GOL . I 4 HOH A 1 402 402 HOH HOH . I 4 HOH A 2 403 403 HOH HOH . I 4 HOH A 3 404 404 HOH HOH . I 4 HOH A 4 405 405 HOH HOH . I 4 HOH A 5 406 406 HOH HOH . I 4 HOH A 6 407 407 HOH HOH . I 4 HOH A 7 408 408 HOH HOH . I 4 HOH A 8 409 409 HOH HOH . I 4 HOH A 9 411 411 HOH HOH . I 4 HOH A 10 413 413 HOH HOH . I 4 HOH A 11 421 421 HOH HOH . I 4 HOH A 12 430 430 HOH HOH . I 4 HOH A 13 432 432 HOH HOH . I 4 HOH A 14 434 434 HOH HOH . I 4 HOH A 15 472 472 HOH HOH . I 4 HOH A 16 501 501 HOH HOH . I 4 HOH A 17 504 504 HOH HOH . I 4 HOH A 18 507 507 HOH HOH . I 4 HOH A 19 508 508 HOH HOH . I 4 HOH A 20 511 511 HOH HOH . I 4 HOH A 21 512 512 HOH HOH . I 4 HOH A 22 514 514 HOH HOH . I 4 HOH A 23 515 515 HOH HOH . I 4 HOH A 24 517 517 HOH HOH . I 4 HOH A 25 518 518 HOH HOH . I 4 HOH A 26 519 519 HOH HOH . I 4 HOH A 27 523 523 HOH HOH . I 4 HOH A 28 525 525 HOH HOH . I 4 HOH A 29 526 526 HOH HOH . I 4 HOH A 30 527 527 HOH HOH . I 4 HOH A 31 531 531 HOH HOH . I 4 HOH A 32 532 532 HOH HOH . I 4 HOH A 33 533 533 HOH HOH . I 4 HOH A 34 535 535 HOH HOH . I 4 HOH A 35 536 536 HOH HOH . I 4 HOH A 36 537 537 HOH HOH . I 4 HOH A 37 538 538 HOH HOH . I 4 HOH A 38 539 539 HOH HOH . I 4 HOH A 39 541 541 HOH HOH . I 4 HOH A 40 543 543 HOH HOH . I 4 HOH A 41 547 547 HOH HOH . I 4 HOH A 42 548 548 HOH HOH . I 4 HOH A 43 551 551 HOH HOH . I 4 HOH A 44 554 554 HOH HOH . I 4 HOH A 45 557 557 HOH HOH . I 4 HOH A 46 558 558 HOH HOH . I 4 HOH A 47 559 559 HOH HOH . I 4 HOH A 48 560 560 HOH HOH . I 4 HOH A 49 561 561 HOH HOH . I 4 HOH A 50 562 562 HOH HOH . I 4 HOH A 51 567 567 HOH HOH . I 4 HOH A 52 568 568 HOH HOH . I 4 HOH A 53 570 570 HOH HOH . I 4 HOH A 54 571 571 HOH HOH . I 4 HOH A 55 572 572 HOH HOH . I 4 HOH A 56 576 576 HOH HOH . I 4 HOH A 57 577 577 HOH HOH . I 4 HOH A 58 578 578 HOH HOH . I 4 HOH A 59 583 583 HOH HOH . I 4 HOH A 60 589 589 HOH HOH . I 4 HOH A 61 590 590 HOH HOH . I 4 HOH A 62 592 592 HOH HOH . I 4 HOH A 63 593 593 HOH HOH . I 4 HOH A 64 595 595 HOH HOH . I 4 HOH A 65 596 596 HOH HOH . I 4 HOH A 66 599 599 HOH HOH . I 4 HOH A 67 601 601 HOH HOH . I 4 HOH A 68 603 603 HOH HOH . I 4 HOH A 69 604 604 HOH HOH . I 4 HOH A 70 605 605 HOH HOH . I 4 HOH A 71 608 608 HOH HOH . I 4 HOH A 72 610 610 HOH HOH . I 4 HOH A 73 614 614 HOH HOH . I 4 HOH A 74 615 615 HOH HOH . I 4 HOH A 75 616 616 HOH HOH . I 4 HOH A 76 617 617 HOH HOH . I 4 HOH A 77 619 619 HOH HOH . I 4 HOH A 78 621 621 HOH HOH . I 4 HOH A 79 625 625 HOH HOH . I 4 HOH A 80 627 627 HOH HOH . I 4 HOH A 81 629 629 HOH HOH . I 4 HOH A 82 630 630 HOH HOH . I 4 HOH A 83 635 635 HOH HOH . I 4 HOH A 84 636 636 HOH HOH . I 4 HOH A 85 639 639 HOH HOH . I 4 HOH A 86 641 641 HOH HOH . I 4 HOH A 87 642 642 HOH HOH . I 4 HOH A 88 644 644 HOH HOH . I 4 HOH A 89 647 647 HOH HOH . I 4 HOH A 90 648 648 HOH HOH . I 4 HOH A 91 650 650 HOH HOH . I 4 HOH A 92 652 652 HOH HOH . I 4 HOH A 93 655 655 HOH HOH . I 4 HOH A 94 658 658 HOH HOH . I 4 HOH A 95 659 659 HOH HOH . I 4 HOH A 96 661 661 HOH HOH . I 4 HOH A 97 662 662 HOH HOH . I 4 HOH A 98 663 663 HOH HOH . I 4 HOH A 99 665 665 HOH HOH . I 4 HOH A 100 667 667 HOH HOH . I 4 HOH A 101 672 672 HOH HOH . I 4 HOH A 102 676 676 HOH HOH . I 4 HOH A 103 678 678 HOH HOH . I 4 HOH A 104 680 680 HOH HOH . I 4 HOH A 105 681 681 HOH HOH . I 4 HOH A 106 682 682 HOH HOH . I 4 HOH A 107 685 685 HOH HOH . I 4 HOH A 108 687 687 HOH HOH . I 4 HOH A 109 689 689 HOH HOH . I 4 HOH A 110 690 690 HOH HOH . I 4 HOH A 111 694 694 HOH HOH . I 4 HOH A 112 695 695 HOH HOH . I 4 HOH A 113 697 697 HOH HOH . I 4 HOH A 114 699 699 HOH HOH . I 4 HOH A 115 701 701 HOH HOH . I 4 HOH A 116 703 703 HOH HOH . I 4 HOH A 117 704 704 HOH HOH . I 4 HOH A 118 707 707 HOH HOH . J 4 HOH B 1 401 401 HOH HOH . J 4 HOH B 2 410 410 HOH HOH . J 4 HOH B 3 412 412 HOH HOH . J 4 HOH B 4 414 414 HOH HOH . J 4 HOH B 5 422 422 HOH HOH . J 4 HOH B 6 423 423 HOH HOH . J 4 HOH B 7 424 424 HOH HOH . J 4 HOH B 8 425 425 HOH HOH . J 4 HOH B 9 426 426 HOH HOH . J 4 HOH B 10 427 427 HOH HOH . J 4 HOH B 11 428 428 HOH HOH . J 4 HOH B 12 429 429 HOH HOH . J 4 HOH B 13 431 431 HOH HOH . J 4 HOH B 14 433 433 HOH HOH . J 4 HOH B 15 451 451 HOH HOH . J 4 HOH B 16 471 471 HOH HOH . J 4 HOH B 17 502 502 HOH HOH . J 4 HOH B 18 503 503 HOH HOH . J 4 HOH B 19 505 505 HOH HOH . J 4 HOH B 20 506 506 HOH HOH . J 4 HOH B 21 509 509 HOH HOH . J 4 HOH B 22 510 510 HOH HOH . J 4 HOH B 23 513 513 HOH HOH . J 4 HOH B 24 516 516 HOH HOH . J 4 HOH B 25 520 520 HOH HOH . J 4 HOH B 26 521 521 HOH HOH . J 4 HOH B 27 522 522 HOH HOH . J 4 HOH B 28 524 524 HOH HOH . J 4 HOH B 29 528 528 HOH HOH . J 4 HOH B 30 529 529 HOH HOH . J 4 HOH B 31 530 530 HOH HOH . J 4 HOH B 32 534 534 HOH HOH . J 4 HOH B 33 540 540 HOH HOH . J 4 HOH B 34 542 542 HOH HOH . J 4 HOH B 35 544 544 HOH HOH . J 4 HOH B 36 545 545 HOH HOH . J 4 HOH B 37 546 546 HOH HOH . J 4 HOH B 38 549 549 HOH HOH . J 4 HOH B 39 550 550 HOH HOH . J 4 HOH B 40 552 552 HOH HOH . J 4 HOH B 41 553 553 HOH HOH . J 4 HOH B 42 555 555 HOH HOH . J 4 HOH B 43 556 556 HOH HOH . J 4 HOH B 44 563 563 HOH HOH . J 4 HOH B 45 564 564 HOH HOH . J 4 HOH B 46 565 565 HOH HOH . J 4 HOH B 47 566 566 HOH HOH . J 4 HOH B 48 569 569 HOH HOH . J 4 HOH B 49 573 573 HOH HOH . J 4 HOH B 50 574 574 HOH HOH . J 4 HOH B 51 575 575 HOH HOH . J 4 HOH B 52 579 579 HOH HOH . J 4 HOH B 53 580 580 HOH HOH . J 4 HOH B 54 581 581 HOH HOH . J 4 HOH B 55 582 582 HOH HOH . J 4 HOH B 56 584 584 HOH HOH . J 4 HOH B 57 585 585 HOH HOH . J 4 HOH B 58 586 586 HOH HOH . J 4 HOH B 59 587 587 HOH HOH . J 4 HOH B 60 588 588 HOH HOH . J 4 HOH B 61 591 591 HOH HOH . J 4 HOH B 62 594 594 HOH HOH . J 4 HOH B 63 597 597 HOH HOH . J 4 HOH B 64 598 598 HOH HOH . J 4 HOH B 65 600 600 HOH HOH . J 4 HOH B 66 602 602 HOH HOH . J 4 HOH B 67 606 606 HOH HOH . J 4 HOH B 68 607 607 HOH HOH . J 4 HOH B 69 609 609 HOH HOH . J 4 HOH B 70 611 611 HOH HOH . J 4 HOH B 71 612 612 HOH HOH . J 4 HOH B 72 613 613 HOH HOH . J 4 HOH B 73 618 618 HOH HOH . J 4 HOH B 74 620 620 HOH HOH . J 4 HOH B 75 622 622 HOH HOH . J 4 HOH B 76 623 623 HOH HOH . J 4 HOH B 77 624 624 HOH HOH . J 4 HOH B 78 626 626 HOH HOH . J 4 HOH B 79 628 628 HOH HOH . J 4 HOH B 80 631 631 HOH HOH . J 4 HOH B 81 632 632 HOH HOH . J 4 HOH B 82 633 633 HOH HOH . J 4 HOH B 83 634 634 HOH HOH . J 4 HOH B 84 637 637 HOH HOH . J 4 HOH B 85 638 638 HOH HOH . J 4 HOH B 86 640 640 HOH HOH . J 4 HOH B 87 643 643 HOH HOH . J 4 HOH B 88 645 645 HOH HOH . J 4 HOH B 89 646 646 HOH HOH . J 4 HOH B 90 649 649 HOH HOH . J 4 HOH B 91 651 651 HOH HOH . J 4 HOH B 92 653 653 HOH HOH . J 4 HOH B 93 654 654 HOH HOH . J 4 HOH B 94 656 656 HOH HOH . J 4 HOH B 95 657 657 HOH HOH . J 4 HOH B 96 660 660 HOH HOH . J 4 HOH B 97 664 664 HOH HOH . J 4 HOH B 98 666 666 HOH HOH . J 4 HOH B 99 668 668 HOH HOH . J 4 HOH B 100 669 669 HOH HOH . J 4 HOH B 101 670 670 HOH HOH . J 4 HOH B 102 671 671 HOH HOH . J 4 HOH B 103 673 673 HOH HOH . J 4 HOH B 104 674 674 HOH HOH . J 4 HOH B 105 675 675 HOH HOH . J 4 HOH B 106 677 677 HOH HOH . J 4 HOH B 107 679 679 HOH HOH . J 4 HOH B 108 683 683 HOH HOH . J 4 HOH B 109 684 684 HOH HOH . J 4 HOH B 110 686 686 HOH HOH . J 4 HOH B 111 688 688 HOH HOH . J 4 HOH B 112 691 691 HOH HOH . J 4 HOH B 113 692 692 HOH HOH . J 4 HOH B 114 693 693 HOH HOH . J 4 HOH B 115 696 696 HOH HOH . J 4 HOH B 116 698 698 HOH HOH . J 4 HOH B 117 700 700 HOH HOH . J 4 HOH B 118 702 702 HOH HOH . J 4 HOH B 119 705 705 HOH HOH . J 4 HOH B 120 706 706 HOH HOH . J 4 HOH B 121 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 18.775 -16.676 -5.678 1 35.02 ? C1 GOL 314 A 1 HETATM 2 O O1 GOL . . . F 3 18.974 -17.078 -7.01 1 42.5 ? O1 GOL 314 A 1 HETATM 3 C C2 GOL . . . F 3 17.985 -15.428 -5.643 1 35.92 ? C2 GOL 314 A 1 HETATM 4 O O2 GOL . . . F 3 18.826 -14.293 -5.927 1 40.09 ? O2 GOL 314 A 1 HETATM 5 C C3 GOL . . . F 3 17.324 -15.298 -4.305 1 30.01 ? C3 GOL 314 A 1 HETATM 6 O O3 GOL . . . F 3 16.565 -14.111 -4.226 1 24.09 ? O3 GOL 314 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #