data_2ZZ5
#
_model_server_result.job_id            EHC0tEmyzUO8PayrkZbJkQ 
_model_server_result.datetime_utc      '2024-10-17 11:32:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zz5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    2ZZ5 
#
_exptl.entry_id    2ZZ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              349.191 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "6-cyanouridine 5'-phosphate" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.52 
_cell.angle_gamma         90 
_cell.entry_id            2ZZ5 
_cell.length_a            59.556 
_cell.length_b            64.359 
_cell.length_c            61.539 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZZ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H12 N3 O9 P' 
_chem_comp.formula_weight    349.191 
_chem_comp.id                6CN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "6-cyanouridine 5'-phosphate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P 6CN doub 1 n n 
P O5' 6CN sing 2 n n 
P O1P 6CN sing 3 n n 
O1P HO1P 6CN sing 4 n n 
O2P P 6CN sing 5 n n 
O2P HO2P 6CN sing 6 n n 
C5' O5' 6CN sing 7 n n 
C5' C4' 6CN sing 8 n n 
C5' H5' 6CN sing 9 n n 
C5' "H5'A" 6CN sing 10 n n 
C4' C3' 6CN sing 11 n n 
C4' H4' 6CN sing 12 n n 
C3' O3' 6CN sing 13 n n 
C3' H3' 6CN sing 14 n n 
O3' HO3' 6CN sing 15 n n 
C2' C3' 6CN sing 16 n n 
C2' O2' 6CN sing 17 n n 
C2' H2' 6CN sing 18 n n 
O2' HO2' 6CN sing 19 n n 
O4' C4' 6CN sing 20 n n 
O4' C1' 6CN sing 21 n n 
C1' C2' 6CN sing 22 n n 
C1' H1' 6CN sing 23 n n 
N1 C1' 6CN sing 24 n n 
C6 N1 6CN sing 25 n n 
C5 C6 6CN doub 26 n n 
C5 H5 6CN sing 27 n n 
C4 C5 6CN sing 28 n n 
C4 N3 6CN sing 29 n n 
O4 C4 6CN doub 30 n n 
N3 C2 6CN sing 31 n n 
N3 HN3 6CN sing 32 n n 
C2 N1 6CN sing 33 n n 
O2 C2 6CN doub 34 n n 
C7 C6 6CN sing 35 n n 
N8 C7 6CN trip 36 n n 
#
_atom_sites.entry_id                     2ZZ5 
_atom_sites.fract_transf_matrix[1][1]    0.016791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008017 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015538 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018007 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6CN A 1 301 301 6CN CNU . 
D 2 6CN B 1 302 302 6CN CNU . 
E 3 HOH A 1 402 402 HOH HOH . 
E 3 HOH A 2 403 403 HOH HOH . 
E 3 HOH A 3 404 404 HOH HOH . 
E 3 HOH A 4 405 405 HOH HOH . 
E 3 HOH A 5 406 406 HOH HOH . 
E 3 HOH A 6 407 407 HOH HOH . 
E 3 HOH A 7 408 408 HOH HOH . 
E 3 HOH A 8 409 409 HOH HOH . 
E 3 HOH A 9 411 411 HOH HOH . 
E 3 HOH A 10 413 413 HOH HOH . 
E 3 HOH A 11 421 421 HOH HOH . 
E 3 HOH A 12 430 430 HOH HOH . 
E 3 HOH A 13 432 432 HOH HOH . 
E 3 HOH A 14 434 434 HOH HOH . 
E 3 HOH A 15 451 451 HOH HOH . 
E 3 HOH A 16 466 466 HOH HOH . 
E 3 HOH A 17 467 467 HOH HOH . 
E 3 HOH A 18 470 470 HOH HOH . 
E 3 HOH A 19 502 502 HOH HOH . 
E 3 HOH A 20 503 503 HOH HOH . 
E 3 HOH A 21 504 504 HOH HOH . 
E 3 HOH A 22 509 509 HOH HOH . 
E 3 HOH A 23 511 511 HOH HOH . 
E 3 HOH A 24 512 512 HOH HOH . 
E 3 HOH A 25 513 513 HOH HOH . 
E 3 HOH A 26 516 516 HOH HOH . 
E 3 HOH A 27 518 518 HOH HOH . 
E 3 HOH A 28 520 520 HOH HOH . 
E 3 HOH A 29 522 522 HOH HOH . 
E 3 HOH A 30 523 523 HOH HOH . 
E 3 HOH A 31 528 528 HOH HOH . 
E 3 HOH A 32 529 529 HOH HOH . 
E 3 HOH A 33 533 533 HOH HOH . 
E 3 HOH A 34 534 534 HOH HOH . 
E 3 HOH A 35 539 539 HOH HOH . 
E 3 HOH A 36 543 543 HOH HOH . 
E 3 HOH A 37 544 544 HOH HOH . 
E 3 HOH A 38 545 545 HOH HOH . 
E 3 HOH A 39 546 546 HOH HOH . 
E 3 HOH A 40 547 547 HOH HOH . 
E 3 HOH A 41 550 550 HOH HOH . 
E 3 HOH A 42 553 553 HOH HOH . 
E 3 HOH A 43 555 555 HOH HOH . 
E 3 HOH A 44 556 556 HOH HOH . 
E 3 HOH A 45 557 557 HOH HOH . 
E 3 HOH A 46 558 558 HOH HOH . 
E 3 HOH A 47 562 562 HOH HOH . 
E 3 HOH A 48 563 563 HOH HOH . 
E 3 HOH A 49 565 565 HOH HOH . 
E 3 HOH A 50 566 566 HOH HOH . 
E 3 HOH A 51 567 567 HOH HOH . 
E 3 HOH A 52 569 569 HOH HOH . 
E 3 HOH A 53 570 570 HOH HOH . 
E 3 HOH A 54 572 572 HOH HOH . 
E 3 HOH A 55 573 573 HOH HOH . 
E 3 HOH A 56 575 575 HOH HOH . 
E 3 HOH A 57 578 578 HOH HOH . 
E 3 HOH A 58 579 579 HOH HOH . 
E 3 HOH A 59 582 582 HOH HOH . 
E 3 HOH A 60 583 583 HOH HOH . 
E 3 HOH A 61 584 584 HOH HOH . 
E 3 HOH A 62 587 587 HOH HOH . 
E 3 HOH A 63 589 589 HOH HOH . 
E 3 HOH A 64 590 590 HOH HOH . 
E 3 HOH A 65 591 591 HOH HOH . 
E 3 HOH A 66 595 595 HOH HOH . 
E 3 HOH A 67 596 596 HOH HOH . 
E 3 HOH A 68 597 597 HOH HOH . 
E 3 HOH A 69 598 598 HOH HOH . 
E 3 HOH A 70 604 604 HOH HOH . 
E 3 HOH A 71 605 605 HOH HOH . 
E 3 HOH A 72 606 606 HOH HOH . 
E 3 HOH A 73 608 608 HOH HOH . 
E 3 HOH A 74 609 609 HOH HOH . 
E 3 HOH A 75 615 615 HOH HOH . 
E 3 HOH A 76 616 616 HOH HOH . 
E 3 HOH A 77 620 620 HOH HOH . 
E 3 HOH A 78 621 621 HOH HOH . 
E 3 HOH A 79 624 624 HOH HOH . 
E 3 HOH A 80 631 631 HOH HOH . 
E 3 HOH A 81 632 632 HOH HOH . 
E 3 HOH A 82 633 633 HOH HOH . 
E 3 HOH A 83 634 634 HOH HOH . 
E 3 HOH A 84 635 635 HOH HOH . 
E 3 HOH A 85 636 636 HOH HOH . 
E 3 HOH A 86 637 637 HOH HOH . 
E 3 HOH A 87 639 639 HOH HOH . 
E 3 HOH A 88 640 640 HOH HOH . 
E 3 HOH A 89 641 641 HOH HOH . 
E 3 HOH A 90 643 643 HOH HOH . 
E 3 HOH A 91 644 644 HOH HOH . 
E 3 HOH A 92 645 645 HOH HOH . 
E 3 HOH A 93 653 653 HOH HOH . 
E 3 HOH A 94 654 654 HOH HOH . 
E 3 HOH A 95 657 657 HOH HOH . 
E 3 HOH A 96 659 659 HOH HOH . 
E 3 HOH A 97 661 661 HOH HOH . 
E 3 HOH A 98 663 663 HOH HOH . 
F 3 HOH B 1 401 401 HOH HOH . 
F 3 HOH B 2 410 410 HOH HOH . 
F 3 HOH B 3 412 412 HOH HOH . 
F 3 HOH B 4 414 414 HOH HOH . 
F 3 HOH B 5 422 422 HOH HOH . 
F 3 HOH B 6 423 423 HOH HOH . 
F 3 HOH B 7 424 424 HOH HOH . 
F 3 HOH B 8 425 425 HOH HOH . 
F 3 HOH B 9 426 426 HOH HOH . 
F 3 HOH B 10 427 427 HOH HOH . 
F 3 HOH B 11 428 428 HOH HOH . 
F 3 HOH B 12 429 429 HOH HOH . 
F 3 HOH B 13 431 431 HOH HOH . 
F 3 HOH B 14 433 433 HOH HOH . 
F 3 HOH B 15 465 465 HOH HOH . 
F 3 HOH B 16 468 468 HOH HOH . 
F 3 HOH B 17 469 469 HOH HOH . 
F 3 HOH B 18 501 501 HOH HOH . 
F 3 HOH B 19 505 505 HOH HOH . 
F 3 HOH B 20 506 506 HOH HOH . 
F 3 HOH B 21 507 507 HOH HOH . 
F 3 HOH B 22 508 508 HOH HOH . 
F 3 HOH B 23 510 510 HOH HOH . 
F 3 HOH B 24 514 514 HOH HOH . 
F 3 HOH B 25 515 515 HOH HOH . 
F 3 HOH B 26 517 517 HOH HOH . 
F 3 HOH B 27 519 519 HOH HOH . 
F 3 HOH B 28 521 521 HOH HOH . 
F 3 HOH B 29 524 524 HOH HOH . 
F 3 HOH B 30 525 525 HOH HOH . 
F 3 HOH B 31 526 526 HOH HOH . 
F 3 HOH B 32 527 527 HOH HOH . 
F 3 HOH B 33 530 530 HOH HOH . 
F 3 HOH B 34 531 531 HOH HOH . 
F 3 HOH B 35 532 532 HOH HOH . 
F 3 HOH B 36 535 535 HOH HOH . 
F 3 HOH B 37 536 536 HOH HOH . 
F 3 HOH B 38 537 537 HOH HOH . 
F 3 HOH B 39 538 538 HOH HOH . 
F 3 HOH B 40 540 540 HOH HOH . 
F 3 HOH B 41 541 541 HOH HOH . 
F 3 HOH B 42 542 542 HOH HOH . 
F 3 HOH B 43 548 548 HOH HOH . 
F 3 HOH B 44 549 549 HOH HOH . 
F 3 HOH B 45 551 551 HOH HOH . 
F 3 HOH B 46 552 552 HOH HOH . 
F 3 HOH B 47 554 554 HOH HOH . 
F 3 HOH B 48 559 559 HOH HOH . 
F 3 HOH B 49 560 560 HOH HOH . 
F 3 HOH B 50 561 561 HOH HOH . 
F 3 HOH B 51 564 564 HOH HOH . 
F 3 HOH B 52 568 568 HOH HOH . 
F 3 HOH B 53 571 571 HOH HOH . 
F 3 HOH B 54 574 574 HOH HOH . 
F 3 HOH B 55 576 576 HOH HOH . 
F 3 HOH B 56 577 577 HOH HOH . 
F 3 HOH B 57 580 580 HOH HOH . 
F 3 HOH B 58 581 581 HOH HOH . 
F 3 HOH B 59 585 585 HOH HOH . 
F 3 HOH B 60 586 586 HOH HOH . 
F 3 HOH B 61 588 588 HOH HOH . 
F 3 HOH B 62 592 592 HOH HOH . 
F 3 HOH B 63 593 593 HOH HOH . 
F 3 HOH B 64 594 594 HOH HOH . 
F 3 HOH B 65 599 599 HOH HOH . 
F 3 HOH B 66 600 600 HOH HOH . 
F 3 HOH B 67 601 601 HOH HOH . 
F 3 HOH B 68 602 602 HOH HOH . 
F 3 HOH B 69 603 603 HOH HOH . 
F 3 HOH B 70 607 607 HOH HOH . 
F 3 HOH B 71 610 610 HOH HOH . 
F 3 HOH B 72 611 611 HOH HOH . 
F 3 HOH B 73 612 612 HOH HOH . 
F 3 HOH B 74 613 613 HOH HOH . 
F 3 HOH B 75 614 614 HOH HOH . 
F 3 HOH B 76 617 617 HOH HOH . 
F 3 HOH B 77 618 618 HOH HOH . 
F 3 HOH B 78 619 619 HOH HOH . 
F 3 HOH B 79 622 622 HOH HOH . 
F 3 HOH B 80 623 623 HOH HOH . 
F 3 HOH B 81 625 625 HOH HOH . 
F 3 HOH B 82 626 626 HOH HOH . 
F 3 HOH B 83 627 627 HOH HOH . 
F 3 HOH B 84 628 628 HOH HOH . 
F 3 HOH B 85 629 629 HOH HOH . 
F 3 HOH B 86 630 630 HOH HOH . 
F 3 HOH B 87 638 638 HOH HOH . 
F 3 HOH B 88 642 642 HOH HOH . 
F 3 HOH B 89 646 646 HOH HOH . 
F 3 HOH B 90 647 647 HOH HOH . 
F 3 HOH B 91 648 648 HOH HOH . 
F 3 HOH B 92 649 649 HOH HOH . 
F 3 HOH B 93 650 650 HOH HOH . 
F 3 HOH B 94 651 651 HOH HOH . 
F 3 HOH B 95 652 652 HOH HOH . 
F 3 HOH B 96 655 655 HOH HOH . 
F 3 HOH B 97 656 656 HOH HOH . 
F 3 HOH B 98 658 658 HOH HOH . 
F 3 HOH B 99 660 660 HOH HOH . 
F 3 HOH B 100 662 662 HOH HOH . 
F 3 HOH B 101 664 664 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P 6CN . . . D 2 21.656 -4.284 3.548 1 12.96 ? O3P 6CN 302 B 1 
HETATM 2 P P 6CN . . . D 2 21.162 -4.93 2.282 1 14.11 ? P 6CN 302 B 1 
HETATM 3 O O1P 6CN . . . D 2 20.635 -3.946 1.248 1 14.38 ? O1P 6CN 302 B 1 
HETATM 4 O O2P 6CN . . . D 2 22.167 -5.904 1.758 1 11.61 ? O2P 6CN 302 B 1 
HETATM 5 O O5' 6CN . . . D 2 19.845 -5.734 2.68 1 12.9 ? O5' 6CN 302 B 1 
HETATM 6 C C5' 6CN . . . D 2 19.739 -6.446 3.899 1 10.86 ? C5' 6CN 302 B 1 
HETATM 7 C C4' 6CN . . . D 2 18.311 -7.046 3.888 1 13.12 ? C4' 6CN 302 B 1 
HETATM 8 C C3' 6CN . . . D 2 17.175 -6.036 3.948 1 13.03 ? C3' 6CN 302 B 1 
HETATM 9 O O3' 6CN . . . D 2 16.019 -6.672 3.296 1 15.76 ? O3' 6CN 302 B 1 
HETATM 10 C C2' 6CN . . . D 2 16.906 -5.908 5.428 1 10.26 ? C2' 6CN 302 B 1 
HETATM 11 O O2' 6CN . . . D 2 15.535 -5.482 5.646 1 14.56 ? O2' 6CN 302 B 1 
HETATM 12 O O4' 6CN . . . D 2 18.115 -7.917 5.051 1 13.64 ? O4' 6CN 302 B 1 
HETATM 13 C C1' 6CN . . . D 2 17.106 -7.36 5.909 1 12.47 ? C1' 6CN 302 B 1 
HETATM 14 N N1 6CN . . . D 2 17.537 -7.493 7.306 1 16.01 ? N1 6CN 302 B 1 
HETATM 15 C C6 6CN . . . D 2 16.771 -8.206 8.133 1 18.36 ? C6 6CN 302 B 1 
HETATM 16 C C5 6CN . . . D 2 17.129 -8.403 9.503 1 15.9 ? C5 6CN 302 B 1 
HETATM 17 C C4 6CN . . . D 2 18.327 -7.774 9.919 1 15.77 ? C4 6CN 302 B 1 
HETATM 18 O O4 6CN . . . D 2 18.815 -7.938 11.096 1 16.72 ? O4 6CN 302 B 1 
HETATM 19 N N3 6CN . . . D 2 19.091 -7.068 9.052 1 12.57 ? N3 6CN 302 B 1 
HETATM 20 C C2 6CN . . . D 2 18.715 -6.925 7.74 1 14.85 ? C2 6CN 302 B 1 
HETATM 21 O O2 6CN . . . D 2 19.431 -6.205 6.979 1 13.08 ? O2 6CN 302 B 1 
HETATM 22 C C7 6CN . . . D 2 16.272 -9.522 7.705 1 34.08 ? C7 6CN 302 B 1 
HETATM 23 N N8 6CN . . . D 2 16.03 -10.559 7.205 1 41.3 ? N8 6CN 302 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           23 
#