data_2ZZ7 # _model_server_result.job_id csS-LeTdWSQnPRDh8dJ9ZA _model_server_result.datetime_utc '2024-10-17 09:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 2ZZ7 # _exptl.entry_id 2ZZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-HYDROXYURIDINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZZ7 _cell.length_a 57.933 _cell.length_b 103.29 _cell.length_c 73.533 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZZ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 103.29 73.533 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N2 O10 P' _chem_comp.formula_weight 340.181 _chem_comp.id BMP _chem_comp.mon_nstd_flag . _chem_comp.name "6-HYDROXYURIDINE-5'-PHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 BMP doub 70 n n P OP2 BMP sing 71 n n P OP3 BMP sing 72 n n P O5' BMP sing 73 n n OP2 HOP2 BMP sing 74 n n OP3 HOP3 BMP sing 75 n n O5' C5' BMP sing 76 n n C5' C4' BMP sing 77 n n C5' H5' BMP sing 78 n n C5' "H5''" BMP sing 79 n n C4' O4' BMP sing 80 n n C4' C3' BMP sing 81 n n C4' H4' BMP sing 82 n n O4' C1' BMP sing 83 n n C3' O3' BMP sing 84 n n C3' C2' BMP sing 85 n n C3' H3' BMP sing 86 n n O3' HO3' BMP sing 87 n n C2' O2' BMP sing 88 n n C2' C1' BMP sing 89 n n C2' H2' BMP sing 90 n n O2' HO2' BMP sing 91 n n C1' N1 BMP sing 92 n n C1' H1' BMP sing 93 n n N1 C2 BMP sing 94 n n N1 C6 BMP sing 95 n n C2 O2 BMP doub 96 n n C2 N3 BMP sing 97 n n N3 C4 BMP sing 98 n n N3 HN3 BMP sing 99 n n C4 O4 BMP doub 100 n n C4 C5 BMP sing 101 n n C5 C6 BMP doub 102 n n C5 H51 BMP sing 103 n n C6 O1 BMP sing 104 n n O1 HO1 BMP sing 105 n n # _atom_sites.entry_id 2ZZ7 _atom_sites.fract_transf_matrix[1][1] 0.017261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BMP A 1 301 301 BMP BMP . C 3 GOL A 1 311 311 GOL GOL . D 3 GOL A 1 312 312 GOL GOL . E 4 HOH A 1 401 401 HOH HOH . E 4 HOH A 2 402 402 HOH HOH . E 4 HOH A 3 403 403 HOH HOH . E 4 HOH A 4 404 404 HOH HOH . E 4 HOH A 5 405 405 HOH HOH . E 4 HOH A 6 406 406 HOH HOH . E 4 HOH A 7 407 407 HOH HOH . E 4 HOH A 8 408 408 HOH HOH . E 4 HOH A 9 409 409 HOH HOH . E 4 HOH A 10 410 410 HOH HOH . E 4 HOH A 11 411 411 HOH HOH . E 4 HOH A 12 412 412 HOH HOH . E 4 HOH A 13 413 413 HOH HOH . E 4 HOH A 14 414 414 HOH HOH . E 4 HOH A 15 451 451 HOH HOH . E 4 HOH A 16 463 463 HOH HOH . E 4 HOH A 17 475 475 HOH HOH . E 4 HOH A 18 501 501 HOH HOH . E 4 HOH A 19 502 502 HOH HOH . E 4 HOH A 20 503 503 HOH HOH . E 4 HOH A 21 504 504 HOH HOH . E 4 HOH A 22 505 505 HOH HOH . E 4 HOH A 23 506 506 HOH HOH . E 4 HOH A 24 507 507 HOH HOH . E 4 HOH A 25 508 508 HOH HOH . E 4 HOH A 26 509 509 HOH HOH . E 4 HOH A 27 510 510 HOH HOH . E 4 HOH A 28 511 511 HOH HOH . E 4 HOH A 29 512 512 HOH HOH . E 4 HOH A 30 513 513 HOH HOH . E 4 HOH A 31 514 514 HOH HOH . E 4 HOH A 32 515 515 HOH HOH . E 4 HOH A 33 516 516 HOH HOH . E 4 HOH A 34 517 517 HOH HOH . E 4 HOH A 35 518 518 HOH HOH . E 4 HOH A 36 519 519 HOH HOH . E 4 HOH A 37 520 520 HOH HOH . E 4 HOH A 38 521 521 HOH HOH . E 4 HOH A 39 522 522 HOH HOH . E 4 HOH A 40 523 523 HOH HOH . E 4 HOH A 41 524 524 HOH HOH . E 4 HOH A 42 525 525 HOH HOH . E 4 HOH A 43 526 526 HOH HOH . E 4 HOH A 44 527 527 HOH HOH . E 4 HOH A 45 528 528 HOH HOH . E 4 HOH A 46 529 529 HOH HOH . E 4 HOH A 47 530 530 HOH HOH . E 4 HOH A 48 531 531 HOH HOH . E 4 HOH A 49 532 532 HOH HOH . E 4 HOH A 50 533 533 HOH HOH . E 4 HOH A 51 534 534 HOH HOH . E 4 HOH A 52 535 535 HOH HOH . E 4 HOH A 53 536 536 HOH HOH . E 4 HOH A 54 537 537 HOH HOH . E 4 HOH A 55 538 538 HOH HOH . E 4 HOH A 56 539 539 HOH HOH . E 4 HOH A 57 540 540 HOH HOH . E 4 HOH A 58 541 541 HOH HOH . E 4 HOH A 59 542 542 HOH HOH . E 4 HOH A 60 543 543 HOH HOH . E 4 HOH A 61 544 544 HOH HOH . E 4 HOH A 62 545 545 HOH HOH . E 4 HOH A 63 546 546 HOH HOH . E 4 HOH A 64 547 547 HOH HOH . E 4 HOH A 65 548 548 HOH HOH . E 4 HOH A 66 549 549 HOH HOH . E 4 HOH A 67 550 550 HOH HOH . E 4 HOH A 68 551 551 HOH HOH . E 4 HOH A 69 552 552 HOH HOH . E 4 HOH A 70 553 553 HOH HOH . E 4 HOH A 71 554 554 HOH HOH . E 4 HOH A 72 555 555 HOH HOH . E 4 HOH A 73 556 556 HOH HOH . E 4 HOH A 74 557 557 HOH HOH . E 4 HOH A 75 558 558 HOH HOH . E 4 HOH A 76 559 559 HOH HOH . E 4 HOH A 77 560 560 HOH HOH . E 4 HOH A 78 561 561 HOH HOH . E 4 HOH A 79 562 562 HOH HOH . E 4 HOH A 80 563 563 HOH HOH . E 4 HOH A 81 564 564 HOH HOH . E 4 HOH A 82 565 565 HOH HOH . E 4 HOH A 83 566 566 HOH HOH . E 4 HOH A 84 567 567 HOH HOH . E 4 HOH A 85 568 568 HOH HOH . E 4 HOH A 86 569 569 HOH HOH . E 4 HOH A 87 570 570 HOH HOH . E 4 HOH A 88 571 571 HOH HOH . E 4 HOH A 89 572 572 HOH HOH . E 4 HOH A 90 573 573 HOH HOH . E 4 HOH A 91 574 574 HOH HOH . E 4 HOH A 92 575 575 HOH HOH . E 4 HOH A 93 576 576 HOH HOH . E 4 HOH A 94 577 577 HOH HOH . E 4 HOH A 95 578 578 HOH HOH . E 4 HOH A 96 579 579 HOH HOH . E 4 HOH A 97 580 580 HOH HOH . E 4 HOH A 98 581 581 HOH HOH . E 4 HOH A 99 582 582 HOH HOH . E 4 HOH A 100 583 583 HOH HOH . E 4 HOH A 101 584 584 HOH HOH . E 4 HOH A 102 585 585 HOH HOH . E 4 HOH A 103 586 586 HOH HOH . E 4 HOH A 104 587 587 HOH HOH . E 4 HOH A 105 588 588 HOH HOH . E 4 HOH A 106 589 589 HOH HOH . E 4 HOH A 107 590 590 HOH HOH . E 4 HOH A 108 591 591 HOH HOH . E 4 HOH A 109 592 592 HOH HOH . E 4 HOH A 110 593 593 HOH HOH . E 4 HOH A 111 594 594 HOH HOH . E 4 HOH A 112 595 595 HOH HOH . E 4 HOH A 113 596 596 HOH HOH . E 4 HOH A 114 597 597 HOH HOH . E 4 HOH A 115 598 598 HOH HOH . E 4 HOH A 116 599 599 HOH HOH . E 4 HOH A 117 600 600 HOH HOH . E 4 HOH A 118 601 601 HOH HOH . E 4 HOH A 119 602 602 HOH HOH . E 4 HOH A 120 603 603 HOH HOH . E 4 HOH A 121 604 604 HOH HOH . E 4 HOH A 122 605 605 HOH HOH . E 4 HOH A 123 606 606 HOH HOH . E 4 HOH A 124 607 607 HOH HOH . E 4 HOH A 125 608 608 HOH HOH . E 4 HOH A 126 609 609 HOH HOH . E 4 HOH A 127 610 610 HOH HOH . E 4 HOH A 128 611 611 HOH HOH . E 4 HOH A 129 612 612 HOH HOH . E 4 HOH A 130 613 613 HOH HOH . E 4 HOH A 131 614 614 HOH HOH . E 4 HOH A 132 615 615 HOH HOH . E 4 HOH A 133 616 616 HOH HOH . E 4 HOH A 134 617 617 HOH HOH . E 4 HOH A 135 618 618 HOH HOH . E 4 HOH A 136 619 619 HOH HOH . E 4 HOH A 137 620 620 HOH HOH . E 4 HOH A 138 621 621 HOH HOH . E 4 HOH A 139 622 622 HOH HOH . E 4 HOH A 140 623 623 HOH HOH . E 4 HOH A 141 624 624 HOH HOH . E 4 HOH A 142 625 625 HOH HOH . E 4 HOH A 143 626 626 HOH HOH . E 4 HOH A 144 627 627 HOH HOH . E 4 HOH A 145 628 628 HOH HOH . E 4 HOH A 146 629 629 HOH HOH . E 4 HOH A 147 630 630 HOH HOH . E 4 HOH A 148 631 631 HOH HOH . E 4 HOH A 149 632 632 HOH HOH . E 4 HOH A 150 633 633 HOH HOH . E 4 HOH A 151 634 634 HOH HOH . E 4 HOH A 152 635 635 HOH HOH . E 4 HOH A 153 636 636 HOH HOH . E 4 HOH A 154 637 637 HOH HOH . E 4 HOH A 155 638 638 HOH HOH . E 4 HOH A 156 639 639 HOH HOH . E 4 HOH A 157 640 640 HOH HOH . E 4 HOH A 158 641 641 HOH HOH . E 4 HOH A 159 642 642 HOH HOH . E 4 HOH A 160 643 643 HOH HOH . E 4 HOH A 161 644 644 HOH HOH . E 4 HOH A 162 645 645 HOH HOH . E 4 HOH A 163 646 646 HOH HOH . E 4 HOH A 164 647 647 HOH HOH . E 4 HOH A 165 648 648 HOH HOH . E 4 HOH A 166 649 649 HOH HOH . E 4 HOH A 167 650 650 HOH HOH . E 4 HOH A 168 651 651 HOH HOH . E 4 HOH A 169 652 652 HOH HOH . E 4 HOH A 170 653 653 HOH HOH . E 4 HOH A 171 654 654 HOH HOH . E 4 HOH A 172 655 655 HOH HOH . E 4 HOH A 173 656 656 HOH HOH . E 4 HOH A 174 657 657 HOH HOH . E 4 HOH A 175 658 658 HOH HOH . E 4 HOH A 176 659 659 HOH HOH . E 4 HOH A 177 660 660 HOH HOH . E 4 HOH A 178 661 661 HOH HOH . E 4 HOH A 179 662 662 HOH HOH . E 4 HOH A 180 663 663 HOH HOH . E 4 HOH A 181 664 664 HOH HOH . E 4 HOH A 182 665 665 HOH HOH . E 4 HOH A 183 666 666 HOH HOH . E 4 HOH A 184 667 667 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P BMP . . . B 2 18.963 34.616 38.344 1 6.64 ? P BMP 301 A 1 HETATM 2 O OP1 BMP . . . B 2 17.691 34.852 39.08 1 7.58 ? OP1 BMP 301 A 1 HETATM 3 O OP2 BMP . . . B 2 20.158 34.515 39.258 1 7.03 ? OP2 BMP 301 A 1 HETATM 4 O OP3 BMP . . . B 2 18.881 33.482 37.371 1 6.34 ? OP3 BMP 301 A 1 HETATM 5 O O5' BMP . . . B 2 19.329 35.938 37.483 1 7.19 ? O5' BMP 301 A 1 HETATM 6 C C5' BMP . . . B 2 18.28 36.745 36.907 1 7.08 ? C5' BMP 301 A 1 HETATM 7 C C4' BMP . . . B 2 19.023 37.89 36.238 1 5.17 ? C4' BMP 301 A 1 HETATM 8 O O4' BMP . . . B 2 18.108 38.663 35.412 1 6.24 ? O4' BMP 301 A 1 HETATM 9 C C3' BMP . . . B 2 19.582 38.902 37.23 1 6.17 ? C3' BMP 301 A 1 HETATM 10 O O3' BMP . . . B 2 20.714 39.565 36.601 1 6.02 ? O3' BMP 301 A 1 HETATM 11 C C2' BMP . . . B 2 18.436 39.896 37.407 1 5.14 ? C2' BMP 301 A 1 HETATM 12 O O2' BMP . . . B 2 18.967 41.17 37.789 1 6.93 ? O2' BMP 301 A 1 HETATM 13 C C1' BMP . . . B 2 17.886 39.976 36.006 1 4.94 ? C1' BMP 301 A 1 HETATM 14 N N1 BMP . . . B 2 16.448 40.259 35.923 1 6.29 ? N1 BMP 301 A 1 HETATM 15 C C2 BMP . . . B 2 15.484 39.458 36.485 1 6.99 ? C2 BMP 301 A 1 HETATM 16 O O2 BMP . . . B 2 15.833 38.489 37.177 1 6.27 ? O2 BMP 301 A 1 HETATM 17 N N3 BMP . . . B 2 14.18 39.757 36.334 1 5.53 ? N3 BMP 301 A 1 HETATM 18 C C4 BMP . . . B 2 13.752 40.824 35.62 1 8.73 ? C4 BMP 301 A 1 HETATM 19 O O4 BMP . . . B 2 12.512 40.995 35.503 1 8.71 ? O4 BMP 301 A 1 HETATM 20 C C5 BMP . . . B 2 14.669 41.677 35.038 1 6.93 ? C5 BMP 301 A 1 HETATM 21 C C6 BMP . . . B 2 16.011 41.383 35.168 1 7.25 ? C6 BMP 301 A 1 HETATM 22 O O1 BMP . . . B 2 16.869 42.115 34.602 1 12.02 ? O1 BMP 301 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #