data_2ZZ9 # _model_server_result.job_id 3fbbXQmDgt8kuGcz3uI6ng _model_server_result.datetime_utc '2025-02-26 07:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 2ZZ9 # _exptl.entry_id 2ZZ9 _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2ZZ9 _cell.length_a 69 _cell.length_b 69 _cell.length_c 160 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 69 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 34.5 34.5 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -34.5 34.5 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 237 n n C5 C4 PEE sing 238 n n C4 O4P PEE sing 239 n n O4P P PEE sing 240 n n O1P P PEE doub 241 n n C1 O3P PEE sing 242 n n C1 C2 PEE sing 243 n n O3P P PEE sing 244 n n P O2P PEE sing 245 n n C2 C3 PEE sing 246 n n C2 O2 PEE sing 247 n n C3 O3 PEE sing 248 n n O2 C10 PEE sing 249 n n C31 C30 PEE sing 250 n n C31 C32 PEE sing 251 n n C33 C32 PEE sing 252 n n C33 C34 PEE sing 253 n n C30 O3 PEE sing 254 n n C30 O5 PEE doub 255 n n C10 O4 PEE doub 256 n n C10 C11 PEE sing 257 n n C34 C35 PEE sing 258 n n C11 C12 PEE sing 259 n n C35 C36 PEE sing 260 n n C36 C37 PEE sing 261 n n C37 C38 PEE sing 262 n n C38 C39 PEE doub 263 z n C12 C13 PEE sing 264 n n C39 C40 PEE sing 265 n n C13 C14 PEE sing 266 n n C14 C15 PEE sing 267 n n C40 C41 PEE sing 268 n n C15 C16 PEE sing 269 n n C41 C42 PEE sing 270 n n C16 C17 PEE sing 271 n n C42 C43 PEE sing 272 n n C17 C18 PEE sing 273 n n C43 C44 PEE sing 274 n n C18 C19 PEE doub 275 z n C46 C47 PEE sing 276 n n C46 C45 PEE sing 277 n n C44 C45 PEE sing 278 n n C19 C20 PEE sing 279 n n C20 C21 PEE sing 280 n n C21 C22 PEE sing 281 n n C22 C23 PEE sing 282 n n C23 C24 PEE sing 283 n n C24 C25 PEE sing 284 n n C26 C25 PEE sing 285 n n C26 C27 PEE sing 286 n n C27 H7 PEE sing 287 n n C27 H8 PEE sing 288 n n C27 H82 PEE sing 289 n n C26 H5 PEE sing 290 n n C26 H6 PEE sing 291 n n C25 H12 PEE sing 292 n n C25 H4 PEE sing 293 n n C24 H10 PEE sing 294 n n C24 H11 PEE sing 295 n n C23 H83 PEE sing 296 n n C23 H9 PEE sing 297 n n C22 H2 PEE sing 298 n n C22 H3 PEE sing 299 n n C21 H14 PEE sing 300 n n C21 H1 PEE sing 301 n n C20 H16 PEE sing 302 n n C20 H13 PEE sing 303 n n C19 H18 PEE sing 304 n n C18 H20 PEE sing 305 n n C17 H22 PEE sing 306 n n C17 H19 PEE sing 307 n n C16 H21 PEE sing 308 n n C16 H28 PEE sing 309 n n C15 H23 PEE sing 310 n n C15 H24 PEE sing 311 n n C14 H25 PEE sing 312 n n C14 H26 PEE sing 313 n n C13 H17 PEE sing 314 n n C13 H27 PEE sing 315 n n C12 H15 PEE sing 316 n n C12 H29 PEE sing 317 n n C11 H30 PEE sing 318 n n C11 H31 PEE sing 319 n n C2 H32 PEE sing 320 n n C1 H33 PEE sing 321 n n C1 H34 PEE sing 322 n n O2P H35 PEE sing 323 n n C4 H36 PEE sing 324 n n C4 H37 PEE sing 325 n n C5 H38 PEE sing 326 n n C5 H39 PEE sing 327 n n N H40 PEE sing 328 n n N H41 PEE sing 329 n n C3 H43 PEE sing 330 n n C3 H44 PEE sing 331 n n C31 H45 PEE sing 332 n n C31 H46 PEE sing 333 n n C32 H47 PEE sing 334 n n C32 H48 PEE sing 335 n n C33 H49 PEE sing 336 n n C33 H50 PEE sing 337 n n C34 H51 PEE sing 338 n n C34 H52 PEE sing 339 n n C35 H53 PEE sing 340 n n C35 H54 PEE sing 341 n n C36 H55 PEE sing 342 n n C36 H56 PEE sing 343 n n C37 H57 PEE sing 344 n n C37 H58 PEE sing 345 n n C38 H59 PEE sing 346 n n C39 H60 PEE sing 347 n n C40 H81 PEE sing 348 n n C40 H61 PEE sing 349 n n C41 H80 PEE sing 350 n n C41 H62 PEE sing 351 n n C42 H63 PEE sing 352 n n C42 H64 PEE sing 353 n n C43 H65 PEE sing 354 n n C43 H66 PEE sing 355 n n C44 H67 PEE sing 356 n n C44 H68 PEE sing 357 n n C45 H69 PEE sing 358 n n C45 H70 PEE sing 359 n n C46 H71 PEE sing 360 n n C46 H72 PEE sing 361 n n C47 H73 PEE sing 362 n n C47 H74 PEE sing 363 n n C47 H75 PEE sing 364 n n # _atom_sites.entry_id 2ZZ9 _atom_sites.fract_transf_matrix[1][1] 0.014493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEE A 1 401 401 PEE PEE . C 2 PEE A 1 402 402 PEE PEE . D 2 PEE A 1 403 403 PEE PEE . E 2 PEE A 1 404 404 PEE PEE . F 2 PEE A 1 405 405 PEE PEE . G 3 HOH A 1 545 545 HOH HOH . G 3 HOH A 2 546 546 HOH HOH . G 3 HOH A 3 547 547 HOH HOH . G 3 HOH A 4 548 548 HOH HOH . G 3 HOH A 5 549 549 HOH HOH . G 3 HOH A 6 550 550 HOH HOH . G 3 HOH A 7 551 551 HOH HOH . G 3 HOH A 8 552 552 HOH HOH . G 3 HOH A 9 553 553 HOH HOH . G 3 HOH A 10 554 554 HOH HOH . G 3 HOH A 11 555 555 HOH HOH . G 3 HOH A 12 556 556 HOH HOH . G 3 HOH A 13 557 557 HOH HOH . G 3 HOH A 14 558 558 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 PEE . . . F 2 33.447 47.756 130.935 1 104.67 ? C19 PEE 405 A 1 HETATM 2 C C18 PEE . . . F 2 32.181 47.017 130.512 1 104.77 ? C18 PEE 405 A 1 HETATM 3 C C17 PEE . . . F 2 32.331 46.381 129.136 1 105.02 ? C17 PEE 405 A 1 HETATM 4 C C16 PEE . . . F 2 33.124 45.084 129.231 1 105.59 ? C16 PEE 405 A 1 HETATM 5 C C15 PEE . . . F 2 32.529 43.997 128.347 1 106.33 ? C15 PEE 405 A 1 HETATM 6 C C14 PEE . . . F 2 32.887 42.598 128.852 1 107.01 ? C14 PEE 405 A 1 HETATM 7 C C13 PEE . . . F 2 33.732 41.798 127.856 1 107.74 ? C13 PEE 405 A 1 HETATM 8 C C12 PEE . . . F 2 35.209 42.2 127.891 1 108.23 ? C12 PEE 405 A 1 HETATM 9 C C11 PEE . . . F 2 36.053 41.468 126.85 1 108.47 ? C11 PEE 405 A 1 HETATM 10 C C10 PEE . . . F 2 35.901 40.868 124.581 1 107.74 ? C10 PEE 405 A 1 HETATM 11 O O4 PEE . . . F 2 35.719 41.914 125.533 1 108.35 ? O4 PEE 405 A 1 HETATM 12 O O2 PEE . . . F 2 34.758 40.004 124.585 1 106.71 ? O2 PEE 405 A 1 HETATM 13 C C2 PEE . . . F 2 35.036 38.734 123.987 1 105.15 ? C2 PEE 405 A 1 HETATM 14 C C1 PEE . . . F 2 34.568 38.737 122.541 1 102.19 ? C1 PEE 405 A 1 HETATM 15 O O3P PEE . . . F 2 34.441 40.096 122.109 1 98.59 ? O3P PEE 405 A 1 HETATM 16 P P PEE . . . F 2 34.95 40.625 120.667 1 96.24 ? P PEE 405 A 1 HETATM 17 O O2P PEE . . . F 2 33.799 41.404 120.06 1 95.76 ? O2P PEE 405 A 1 HETATM 18 O O1P PEE . . . F 2 35.585 39.475 119.908 1 95.69 ? O1P PEE 405 A 1 HETATM 19 O O4P PEE . . . F 2 36.115 41.699 120.995 1 93.58 ? O4P PEE 405 A 1 HETATM 20 C C4 PEE . . . F 2 36.728 42.439 119.934 1 90.76 ? C4 PEE 405 A 1 HETATM 21 C C5 PEE . . . F 2 36.16 43.853 119.889 1 89.81 ? C5 PEE 405 A 1 HETATM 22 N N PEE . . . F 2 36.707 44.619 120.994 1 89.66 ? N PEE 405 A 1 HETATM 23 C C3 PEE . . . F 2 34.312 37.624 124.736 1 105.88 ? C3 PEE 405 A 1 HETATM 24 O O3 PEE . . . F 2 34.499 37.798 126.141 1 106.44 ? O3 PEE 405 A 1 HETATM 25 C C30 PEE . . . F 2 35.418 36.955 126.897 1 106.38 ? C30 PEE 405 A 1 HETATM 26 O O5 PEE . . . F 2 35.343 35.739 126.8 1 106.64 ? O5 PEE 405 A 1 HETATM 27 C C31 PEE . . . F 2 36.459 37.569 127.805 1 105.68 ? C31 PEE 405 A 1 HETATM 28 C C32 PEE . . . F 2 35.84 38.549 128.8 1 104.74 ? C32 PEE 405 A 1 HETATM 29 C C33 PEE . . . F 2 35.007 37.869 129.887 1 103.6 ? C33 PEE 405 A 1 HETATM 30 C C34 PEE . . . F 2 35.051 38.642 131.201 1 102.32 ? C34 PEE 405 A 1 HETATM 31 C C35 PEE . . . F 2 34.101 39.838 131.223 1 101.38 ? C35 PEE 405 A 1 HETATM 32 C C36 PEE . . . F 2 34.864 41.13 131.497 1 100.3 ? C36 PEE 405 A 1 HETATM 33 C C37 PEE . . . F 2 34.312 41.885 132.704 1 99.55 ? C37 PEE 405 A 1 HETATM 34 C C38 PEE . . . F 2 33.835 43.285 132.336 1 98.86 ? C38 PEE 405 A 1 HETATM 35 C C39 PEE . . . F 2 34.966 44.299 132.453 1 98.53 ? C39 PEE 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #