data_2ZZG # _model_server_result.job_id XTYN1_EdzLVwxQPkVXgfxg _model_server_result.datetime_utc '2024-12-22 03:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2zzg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":999}' # _entry.id 2ZZG # _exptl.entry_id 2ZZG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.398 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 117.31 _cell.angle_beta 90.4 _cell.angle_gamma 107.36 _cell.entry_id 2ZZG _cell.length_a 70.874 _cell.length_b 89.205 _cell.length_c 94.905 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2ZZG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 20 A CYS 20 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc2 A SG CYS 23 A CYS 23 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A SG CYS 37 A CYS 37 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 A SG CYS 42 A CYS 42 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 A NE2 HIS 617 A HIS 617 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 A SG CYS 717 A CYS 717 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc7 D ZN ZN . A ZN 901 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 B SG CYS 20 B CYS 20 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 B SG CYS 23 B CYS 23 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc10 B SG CYS 37 B CYS 37 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc11 B SG CYS 42 B CYS 42 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc12 B NE2 HIS 613 B HIS 613 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc13 B NE2 HIS 617 B HIS 617 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc14 B SG CYS 717 B CYS 717 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? # _chem_comp.formula 'C13 H19 N7 O7 S' _chem_comp.formula_weight 417.398 _chem_comp.id A5A _chem_comp.mon_nstd_flag . _chem_comp.name "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA A5A sing 1 n n N H A5A sing 2 n n N HN2 A5A sing 3 n n CA CB A5A sing 4 n n CA C A5A sing 5 n n CA HA A5A sing 6 n n CB HB1 A5A sing 7 n n CB HB2 A5A sing 8 n n CB HB3 A5A sing 9 n n C O A5A doub 10 n n C N3S A5A sing 11 n n N3S S A5A sing 12 n n N3S H3S A5A sing 13 n n S O1S A5A doub 14 n n S O2S A5A doub 15 n n S O5' A5A sing 16 n n O5' C5' A5A sing 17 n n C5' C4' A5A sing 18 n n C5' "H5'1" A5A sing 19 n n C5' "H5'2" A5A sing 20 n n C4' O4' A5A sing 21 n n C4' C3' A5A sing 22 n n C4' H4' A5A sing 23 n n O4' C1' A5A sing 24 n n C3' O3' A5A sing 25 n n C3' C2' A5A sing 26 n n C3' H3' A5A sing 27 n n O3' H3T A5A sing 28 n n C2' O2' A5A sing 29 n n C2' C1' A5A sing 30 n n C2' H2' A5A sing 31 n n O2' "HO'2" A5A sing 32 n n C1' N9 A5A sing 33 n n C1' H1' A5A sing 34 n n N9 C8 A5A sing 35 n y N9 C4 A5A sing 36 n y C8 N7 A5A doub 37 n y C8 H8 A5A sing 38 n n N7 C5 A5A sing 39 n y C5 C6 A5A doub 40 n y C5 C4 A5A sing 41 n y C6 N6 A5A sing 42 n n C6 N1 A5A sing 43 n y N6 H61 A5A sing 44 n n N6 H62 A5A sing 45 n n N1 C2 A5A doub 46 n y C2 N3 A5A sing 47 n y C2 H2 A5A sing 48 n n N3 C4 A5A doub 49 n y # _atom_sites.entry_id 2ZZG _atom_sites.fract_transf_matrix[1][1] 0.01411 _atom_sites.fract_transf_matrix[1][2] 0.00441 _atom_sites.fract_transf_matrix[1][3] 0.002545 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011745 _atom_sites.fract_transf_matrix[2][3] 0.006477 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 900 900 ZN ZN . D 2 ZN A 1 901 901 ZN ZN . E 3 A5A A 1 999 999 A5A ASA . F 2 ZN B 1 900 900 ZN ZN . G 2 ZN B 1 901 901 ZN ZN . H 3 A5A B 1 999 999 A5A ASA . I 4 HOH A 1 902 902 HOH HOH . J 4 HOH B 1 902 902 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N A5A . . . E 3 -21.234 23.779 -34 1 53.45 ? N A5A 999 A 1 HETATM 2 C CA A5A . . . E 3 -21.956 22.619 -34.458 1 53.83 ? CA A5A 999 A 1 HETATM 3 C CB A5A . . . E 3 -23.059 23.015 -35.417 1 53.53 ? CB A5A 999 A 1 HETATM 4 C C A5A . . . E 3 -21.044 21.769 -35.25 1 54.22 ? C A5A 999 A 1 HETATM 5 O O A5A . . . E 3 -20.14 22.254 -35.898 1 54.83 ? O A5A 999 A 1 HETATM 6 N N3S A5A . . . E 3 -21.325 20.476 -35.189 1 55 ? N3S A5A 999 A 1 HETATM 7 S S A5A . . . E 3 -20.518 19.439 -35.933 1 54.09 ? S A5A 999 A 1 HETATM 8 O O1S A5A . . . E 3 -19.217 19.266 -35.256 1 52.81 ? O1S A5A 999 A 1 HETATM 9 O O2S A5A . . . E 3 -21.233 18.162 -35.863 1 55.22 ? O2S A5A 999 A 1 HETATM 10 O O5' A5A . . . E 3 -20.479 19.908 -37.498 1 54.95 ? O5' A5A 999 A 1 HETATM 11 C C5' A5A . . . E 3 -21.711 20.008 -38.211 1 57.76 ? C5' A5A 999 A 1 HETATM 12 C C4' A5A . . . E 3 -21.688 19.217 -39.52 1 60.33 ? C4' A5A 999 A 1 HETATM 13 O O4' A5A . . . E 3 -20.477 19.5 -40.238 1 62.32 ? O4' A5A 999 A 1 HETATM 14 C C3' A5A . . . E 3 -21.713 17.693 -39.368 1 60.07 ? C3' A5A 999 A 1 HETATM 15 O O3' A5A . . . E 3 -23.007 17.109 -39.29 1 60.35 ? O3' A5A 999 A 1 HETATM 16 C C2' A5A . . . E 3 -21.059 17.209 -40.633 1 60.7 ? C2' A5A 999 A 1 HETATM 17 O O2' A5A . . . E 3 -22.015 17.064 -41.677 1 57.44 ? O2' A5A 999 A 1 HETATM 18 C C1' A5A . . . E 3 -20.081 18.33 -40.97 1 63.21 ? C1' A5A 999 A 1 HETATM 19 N N9 A5A . . . E 3 -18.734 17.829 -40.588 1 63.91 ? N9 A5A 999 A 1 HETATM 20 C C8 A5A . . . E 3 -18.24 17.696 -39.348 1 63.51 ? C8 A5A 999 A 1 HETATM 21 N N7 A5A . . . E 3 -17.004 17.171 -39.443 1 64.09 ? N7 A5A 999 A 1 HETATM 22 C C5 A5A . . . E 3 -16.736 16.969 -40.752 1 64.42 ? C5 A5A 999 A 1 HETATM 23 C C6 A5A . . . E 3 -15.64 16.467 -41.449 1 64.83 ? C6 A5A 999 A 1 HETATM 24 N N6 A5A . . . E 3 -14.53 16.057 -40.78 1 64.3 ? N6 A5A 999 A 1 HETATM 25 N N1 A5A . . . E 3 -15.697 16.395 -42.806 1 64.77 ? N1 A5A 999 A 1 HETATM 26 C C2 A5A . . . E 3 -16.79 16.802 -43.469 1 64.28 ? C2 A5A 999 A 1 HETATM 27 N N3 A5A . . . E 3 -17.858 17.289 -42.822 1 63.47 ? N3 A5A 999 A 1 HETATM 28 C C4 A5A . . . E 3 -17.842 17.379 -41.47 1 64 ? C4 A5A 999 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #