data_2ZZG
#
_model_server_result.job_id            XbjzwMrtZ37ALkm2nWPAZg 
_model_server_result.datetime_utc      '2024-12-22 03:30:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2zzg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":999}' 
#
_entry.id    2ZZG 
#
_exptl.entry_id    2ZZG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              417.398 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         117.31 
_cell.angle_beta          90.4 
_cell.angle_gamma         107.36 
_cell.entry_id            2ZZG 
_cell.length_a            70.874 
_cell.length_b            89.205 
_cell.length_c            94.905 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2ZZG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,I 1 1 
B,F,G,H,J 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 20 A CYS 20 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc2 A SG CYS 23 A CYS 23 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 A SG CYS 37 A CYS 37 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc4 A SG CYS 42 A CYS 42 1_555 C ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc5 A NE2 HIS 617 A HIS 617 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc6 A SG CYS 717 A CYS 717 1_555 D ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc7 D ZN ZN . A ZN 901 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc8 B SG CYS 20 B CYS 20 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc9 B SG CYS 23 B CYS 23 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc10 B SG CYS 37 B CYS 37 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc11 B SG CYS 42 B CYS 42 1_555 F ZN ZN . B ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc12 B NE2 HIS 613 B HIS 613 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc13 B NE2 HIS 617 B HIS 617 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc14 B SG CYS 717 B CYS 717 1_555 G ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
#
_chem_comp.formula           'C13 H19 N7 O7 S' 
_chem_comp.formula_weight    417.398 
_chem_comp.id                A5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA A5A sing 1 n n 
N H A5A sing 2 n n 
N HN2 A5A sing 3 n n 
CA CB A5A sing 4 n n 
CA C A5A sing 5 n n 
CA HA A5A sing 6 n n 
CB HB1 A5A sing 7 n n 
CB HB2 A5A sing 8 n n 
CB HB3 A5A sing 9 n n 
C O A5A doub 10 n n 
C N3S A5A sing 11 n n 
N3S S A5A sing 12 n n 
N3S H3S A5A sing 13 n n 
S O1S A5A doub 14 n n 
S O2S A5A doub 15 n n 
S O5' A5A sing 16 n n 
O5' C5' A5A sing 17 n n 
C5' C4' A5A sing 18 n n 
C5' "H5'1" A5A sing 19 n n 
C5' "H5'2" A5A sing 20 n n 
C4' O4' A5A sing 21 n n 
C4' C3' A5A sing 22 n n 
C4' H4' A5A sing 23 n n 
O4' C1' A5A sing 24 n n 
C3' O3' A5A sing 25 n n 
C3' C2' A5A sing 26 n n 
C3' H3' A5A sing 27 n n 
O3' H3T A5A sing 28 n n 
C2' O2' A5A sing 29 n n 
C2' C1' A5A sing 30 n n 
C2' H2' A5A sing 31 n n 
O2' "HO'2" A5A sing 32 n n 
C1' N9 A5A sing 33 n n 
C1' H1' A5A sing 34 n n 
N9 C8 A5A sing 35 n y 
N9 C4 A5A sing 36 n y 
C8 N7 A5A doub 37 n y 
C8 H8 A5A sing 38 n n 
N7 C5 A5A sing 39 n y 
C5 C6 A5A doub 40 n y 
C5 C4 A5A sing 41 n y 
C6 N6 A5A sing 42 n n 
C6 N1 A5A sing 43 n y 
N6 H61 A5A sing 44 n n 
N6 H62 A5A sing 45 n n 
N1 C2 A5A doub 46 n y 
C2 N3 A5A sing 47 n y 
C2 H2 A5A sing 48 n n 
N3 C4 A5A doub 49 n y 
#
_atom_sites.entry_id                     2ZZG 
_atom_sites.fract_transf_matrix[1][1]    0.01411 
_atom_sites.fract_transf_matrix[1][2]    0.00441 
_atom_sites.fract_transf_matrix[1][3]    0.002545 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011745 
_atom_sites.fract_transf_matrix[2][3]    0.006477 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 900 900 ZN ZN . 
D 2 ZN A 1 901 901 ZN ZN . 
E 3 A5A A 1 999 999 A5A ASA . 
F 2 ZN B 1 900 900 ZN ZN . 
G 2 ZN B 1 901 901 ZN ZN . 
H 3 A5A B 1 999 999 A5A ASA . 
I 4 HOH A 1 902 902 HOH HOH . 
J 4 HOH B 1 902 902 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N A5A . . . H 3 11.469 0.766 7.23 1 55.44 ? N A5A 999 B 1 
HETATM 2 C CA A5A . . . H 3 12.128 1.547 8.26 1 55.91 ? CA A5A 999 B 1 
HETATM 3 C CB A5A . . . H 3 13.449 2.1 7.754 1 55.59 ? CB A5A 999 B 1 
HETATM 4 C C A5A . . . H 3 11.261 2.703 8.66 1 56.27 ? C A5A 999 B 1 
HETATM 5 O O A5A . . . H 3 10.35 3.062 7.944 1 56.73 ? O A5A 999 B 1 
HETATM 6 N N3S A5A . . . H 3 11.565 3.302 9.814 1 57.12 ? N3S A5A 999 B 1 
HETATM 7 S S A5A . . . H 3 10.797 4.485 10.397 1 56.23 ? S A5A 999 B 1 
HETATM 8 O O1S A5A . . . H 3 9.46 3.939 10.712 1 56.69 ? O1S A5A 999 B 1 
HETATM 9 O O2S A5A . . . H 3 11.433 4.968 11.64 1 55.36 ? O2S A5A 999 B 1 
HETATM 10 O O5' A5A . . . H 3 10.766 5.716 9.331 1 54.43 ? O5' A5A 999 B 1 
HETATM 11 C C5' A5A . . . H 3 12.01 6.075 8.767 1 54.47 ? C5' A5A 999 B 1 
HETATM 12 C C4' A5A . . . H 3 12.194 7.579 8.828 1 54.9 ? C4' A5A 999 B 1 
HETATM 13 O O4' A5A . . . H 3 11.096 8.206 8.181 1 55.05 ? O4' A5A 999 B 1 
HETATM 14 C C3' A5A . . . H 3 12.221 8.127 10.25 1 54.36 ? C3' A5A 999 B 1 
HETATM 15 O O3' A5A . . . H 3 13.543 8.189 10.76 1 54.83 ? O3' A5A 999 B 1 
HETATM 16 C C2' A5A . . . H 3 11.651 9.512 10.122 1 53.89 ? C2' A5A 999 B 1 
HETATM 17 O O2' A5A . . . H 3 12.626 10.418 9.637 1 51.87 ? O2' A5A 999 B 1 
HETATM 18 C C1' A5A . . . H 3 10.702 9.352 8.962 1 55.81 ? C1' A5A 999 B 1 
HETATM 19 N N9 A5A . . . H 3 9.27 9.248 9.377 1 55.87 ? N9 A5A 999 B 1 
HETATM 20 C C8 A5A . . . H 3 8.629 8.18 9.871 1 54.97 ? C8 A5A 999 B 1 
HETATM 21 N N7 A5A . . . H 3 7.339 8.533 10.072 1 55.45 ? N7 A5A 999 B 1 
HETATM 22 C C5 A5A . . . H 3 7.176 9.818 9.691 1 55.78 ? C5 A5A 999 B 1 
HETATM 23 C C6 A5A . . . H 3 6.097 10.703 9.649 1 55.92 ? C6 A5A 999 B 1 
HETATM 24 N N6 A5A . . . H 3 4.864 10.331 10.063 1 55.31 ? N6 A5A 999 B 1 
HETATM 25 N N1 A5A . . . H 3 6.297 11.966 9.191 1 56.19 ? N1 A5A 999 B 1 
HETATM 26 C C2 A5A . . . H 3 7.511 12.368 8.777 1 56.01 ? C2 A5A 999 B 1 
HETATM 27 N N3 A5A . . . H 3 8.566 11.539 8.797 1 55.16 ? N3 A5A 999 B 1 
HETATM 28 C C4 A5A . . . H 3 8.412 10.265 9.253 1 55.72 ? C4 A5A 999 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           28 
#