data_308D
#
_model_server_result.job_id            7T12gpWJYCXzX5vuz_VPDQ 
_model_server_result.datetime_utc      '2024-12-04 09:19:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          308d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":15}' 
#
_entry.id    308D 
#
_exptl.entry_id    308D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         69.09 
_cell.angle_beta          90.4 
_cell.angle_gamma         108.03 
_cell.entry_id            308D 
_cell.length_a            18.619 
_cell.length_b            20.096 
_cell.length_c            26.553 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 308D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C7 DT 3 A DT 3 1_555 C O1 BGC . A BGC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? 
covale ? covale2 B C7 DT 3 B DT 9 1_555 G O1 BGC . B BGC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? 
metalc ? metalc1 A OP1 DT 3 A DT 3 1_555 E MG MG . A MG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 A OP2 DA 4 A DA 4 1_555 F MG MG . A MG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc3 E MG MG . A MG 16 1_555 J O HOH . A HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc4 E MG MG . A MG 16 1_555 J O HOH . A HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc5 E MG MG . A MG 16 1_555 J O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc6 E MG MG . A MG 16 1_555 J O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
metalc ? metalc7 E MG MG . A MG 16 1_555 J O HOH . A HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc8 F MG MG . A MG 17 1_555 J O HOH . A HOH 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc9 F MG MG . A MG 17 1_555 J O HOH . A HOH 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc10 F MG MG . A MG 17 1_555 J O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc11 F MG MG . A MG 17 1_555 J O HOH . A HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc12 F MG MG . A MG 17 1_555 J O HOH . A HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc13 J O HOH . A HOH 107 1_555 I MG MG . B MG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc14 J O HOH . A HOH 108 1_555 I MG MG . B MG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc15 I MG MG . B MG 15 1_555 K O HOH . B HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc16 I MG MG . B MG 15 1_555 K O HOH . B HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? 
metalc ? metalc17 I MG MG . B MG 15 1_555 K O HOH . B HOH 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
metalc ? metalc18 I MG MG . B MG 15 1_555 K O HOH . B HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     308D 
_atom_sites.fract_transf_matrix[1][1]    0.053709 
_atom_sites.fract_transf_matrix[1][2]    0.017482 
_atom_sites.fract_transf_matrix[1][3]    -0.006625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.052331 
_atom_sites.fract_transf_matrix[2][3]    -0.021042 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.040592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BGC A 1 7 7 BGC BGC . 
D 3 DM1 A 1 14 14 DM1 DM1 . 
E 4 MG A 1 16 16 MG MG . 
F 4 MG A 1 17 17 MG MG . 
G 2 BGC B 1 13 13 BGC BGC . 
H 3 DM1 B 1 14 14 DM1 DM1 . 
I 4 MG B 1 15 15 MG MG . 
J 5 HOH A 1 18 18 HOH HOH . 
J 5 HOH A 2 19 19 HOH HOH . 
J 5 HOH A 3 22 22 HOH HOH . 
J 5 HOH A 4 23 23 HOH HOH . 
J 5 HOH A 5 24 24 HOH HOH . 
J 5 HOH A 6 25 25 HOH HOH . 
J 5 HOH A 7 27 27 HOH HOH . 
J 5 HOH A 8 29 29 HOH HOH . 
J 5 HOH A 9 30 30 HOH HOH . 
J 5 HOH A 10 31 31 HOH HOH . 
J 5 HOH A 11 32 32 HOH HOH . 
J 5 HOH A 12 34 34 HOH HOH . 
J 5 HOH A 13 35 35 HOH HOH . 
J 5 HOH A 14 36 36 HOH HOH . 
J 5 HOH A 15 37 37 HOH HOH . 
J 5 HOH A 16 38 38 HOH HOH . 
J 5 HOH A 17 39 39 HOH HOH . 
J 5 HOH A 18 41 41 HOH HOH . 
J 5 HOH A 19 42 42 HOH HOH . 
J 5 HOH A 20 44 44 HOH HOH . 
J 5 HOH A 21 47 47 HOH HOH . 
J 5 HOH A 22 48 48 HOH HOH . 
J 5 HOH A 23 50 50 HOH HOH . 
J 5 HOH A 24 51 51 HOH HOH . 
J 5 HOH A 25 52 52 HOH HOH . 
J 5 HOH A 26 56 56 HOH HOH . 
J 5 HOH A 27 57 57 HOH HOH . 
J 5 HOH A 28 58 58 HOH HOH . 
J 5 HOH A 29 59 59 HOH HOH . 
J 5 HOH A 30 60 60 HOH HOH . 
J 5 HOH A 31 61 61 HOH HOH . 
J 5 HOH A 32 62 62 HOH HOH . 
J 5 HOH A 33 64 64 HOH HOH . 
J 5 HOH A 34 65 65 HOH HOH . 
J 5 HOH A 35 66 66 HOH HOH . 
J 5 HOH A 36 68 68 HOH HOH . 
J 5 HOH A 37 69 69 HOH HOH . 
J 5 HOH A 38 70 70 HOH HOH . 
J 5 HOH A 39 71 71 HOH HOH . 
J 5 HOH A 40 72 72 HOH HOH . 
J 5 HOH A 41 73 73 HOH HOH . 
J 5 HOH A 42 74 74 HOH HOH . 
J 5 HOH A 43 75 75 HOH HOH . 
J 5 HOH A 44 76 76 HOH HOH . 
J 5 HOH A 45 81 81 HOH HOH . 
J 5 HOH A 46 83 83 HOH HOH . 
J 5 HOH A 47 84 84 HOH HOH . 
J 5 HOH A 48 87 87 HOH HOH . 
J 5 HOH A 49 92 92 HOH HOH . 
J 5 HOH A 50 93 93 HOH HOH . 
J 5 HOH A 51 94 94 HOH HOH . 
J 5 HOH A 52 95 95 HOH HOH . 
J 5 HOH A 53 96 96 HOH HOH . 
J 5 HOH A 54 97 97 HOH HOH . 
J 5 HOH A 55 98 98 HOH HOH . 
J 5 HOH A 56 99 99 HOH HOH . 
J 5 HOH A 57 100 100 HOH HOH . 
J 5 HOH A 58 103 103 HOH HOH . 
J 5 HOH A 59 106 106 HOH HOH . 
J 5 HOH A 60 107 107 HOH HOH . 
J 5 HOH A 61 108 108 HOH HOH . 
J 5 HOH A 62 113 113 HOH HOH . 
J 5 HOH A 63 114 114 HOH HOH . 
J 5 HOH A 64 115 115 HOH HOH . 
J 5 HOH A 65 116 116 HOH HOH . 
J 5 HOH A 66 117 117 HOH HOH . 
J 5 HOH A 67 118 118 HOH HOH . 
J 5 HOH A 68 119 119 HOH HOH . 
J 5 HOH A 69 120 120 HOH HOH . 
J 5 HOH A 70 121 121 HOH HOH . 
J 5 HOH A 71 122 122 HOH HOH . 
K 5 HOH B 1 20 20 HOH HOH . 
K 5 HOH B 2 21 21 HOH HOH . 
K 5 HOH B 3 26 26 HOH HOH . 
K 5 HOH B 4 28 28 HOH HOH . 
K 5 HOH B 5 33 33 HOH HOH . 
K 5 HOH B 6 40 40 HOH HOH . 
K 5 HOH B 7 43 43 HOH HOH . 
K 5 HOH B 8 45 45 HOH HOH . 
K 5 HOH B 9 46 46 HOH HOH . 
K 5 HOH B 10 49 49 HOH HOH . 
K 5 HOH B 11 53 53 HOH HOH . 
K 5 HOH B 12 54 54 HOH HOH . 
K 5 HOH B 13 55 55 HOH HOH . 
K 5 HOH B 14 63 63 HOH HOH . 
K 5 HOH B 15 67 67 HOH HOH . 
K 5 HOH B 16 77 77 HOH HOH . 
K 5 HOH B 17 78 78 HOH HOH . 
K 5 HOH B 18 79 79 HOH HOH . 
K 5 HOH B 19 80 80 HOH HOH . 
K 5 HOH B 20 82 82 HOH HOH . 
K 5 HOH B 21 85 85 HOH HOH . 
K 5 HOH B 22 86 86 HOH HOH . 
K 5 HOH B 23 88 88 HOH HOH . 
K 5 HOH B 24 89 89 HOH HOH . 
K 5 HOH B 25 90 90 HOH HOH . 
K 5 HOH B 26 91 91 HOH HOH . 
K 5 HOH B 27 101 101 HOH HOH . 
K 5 HOH B 28 102 102 HOH HOH . 
K 5 HOH B 29 104 104 HOH HOH . 
K 5 HOH B 30 105 105 HOH HOH . 
K 5 HOH B 31 109 109 HOH HOH . 
K 5 HOH B 32 110 110 HOH HOH . 
K 5 HOH B 33 111 111 HOH HOH . 
K 5 HOH B 34 112 112 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               1.131 
_atom_site.Cartn_y               14.743 
_atom_site.Cartn_z               4.869 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        15.59 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           15 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           57 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#