data_308D # _model_server_result.job_id OAl6rLaf5HOxXxB6VUzI_Q _model_server_result.datetime_utc '2024-10-12 19:27:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 308d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":7}' # _entry.id 308D # _exptl.entry_id 308D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.09 _cell.angle_beta 90.4 _cell.angle_gamma 108.03 _cell.entry_id 308D _cell.length_a 18.619 _cell.length_b 20.096 _cell.length_c 26.553 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 308D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C7 DT 3 A DT 3 1_555 C O1 BGC . A BGC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale2 B C7 DT 3 B DT 9 1_555 G O1 BGC . B BGC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc1 A OP1 DT 3 A DT 3 1_555 E MG MG . A MG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A OP2 DA 4 A DA 4 1_555 F MG MG . A MG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 E MG MG . A MG 16 1_555 J O HOH . A HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc4 E MG MG . A MG 16 1_555 J O HOH . A HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc5 E MG MG . A MG 16 1_555 J O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc6 E MG MG . A MG 16 1_555 J O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc7 E MG MG . A MG 16 1_555 J O HOH . A HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc8 F MG MG . A MG 17 1_555 J O HOH . A HOH 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc9 F MG MG . A MG 17 1_555 J O HOH . A HOH 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc10 F MG MG . A MG 17 1_555 J O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc11 F MG MG . A MG 17 1_555 J O HOH . A HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc12 F MG MG . A MG 17 1_555 J O HOH . A HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc13 J O HOH . A HOH 107 1_555 I MG MG . B MG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc14 J O HOH . A HOH 108 1_555 I MG MG . B MG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc15 I MG MG . B MG 15 1_555 K O HOH . B HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc16 I MG MG . B MG 15 1_555 K O HOH . B HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc17 I MG MG . B MG 15 1_555 K O HOH . B HOH 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc18 I MG MG . B MG 15 1_555 K O HOH . B HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 1 n n C2 C1 BGC sing 2 n n C2 O2 BGC sing 3 n n C2 H2 BGC sing 4 n n C3 C4 BGC sing 5 n n C3 O3 BGC sing 6 n n C3 H3 BGC sing 7 n n C4 C5 BGC sing 8 n n C4 O4 BGC sing 9 n n C4 H4 BGC sing 10 n n C5 C6 BGC sing 11 n n C5 O5 BGC sing 12 n n C5 H5 BGC sing 13 n n C6 O6 BGC sing 14 n n C6 H61 BGC sing 15 n n C6 H62 BGC sing 16 n n C1 O1 BGC sing 17 n n C1 O5 BGC sing 18 n n C1 H1 BGC sing 19 n n O1 HO1 BGC sing 20 n n O2 HO2 BGC sing 21 n n O3 HO3 BGC sing 22 n n O4 HO4 BGC sing 23 n n O6 HO6 BGC sing 24 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 308D _atom_sites.fract_transf_matrix[1][1] 0.053709 _atom_sites.fract_transf_matrix[1][2] 0.017482 _atom_sites.fract_transf_matrix[1][3] -0.006625 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.052331 _atom_sites.fract_transf_matrix[2][3] -0.021042 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BGC A 1 7 7 BGC BGC . D 3 DM1 A 1 14 14 DM1 DM1 . E 4 MG A 1 16 16 MG MG . F 4 MG A 1 17 17 MG MG . G 2 BGC B 1 13 13 BGC BGC . H 3 DM1 B 1 14 14 DM1 DM1 . I 4 MG B 1 15 15 MG MG . J 5 HOH A 1 18 18 HOH HOH . J 5 HOH A 2 19 19 HOH HOH . J 5 HOH A 3 22 22 HOH HOH . J 5 HOH A 4 23 23 HOH HOH . J 5 HOH A 5 24 24 HOH HOH . J 5 HOH A 6 25 25 HOH HOH . J 5 HOH A 7 27 27 HOH HOH . J 5 HOH A 8 29 29 HOH HOH . J 5 HOH A 9 30 30 HOH HOH . J 5 HOH A 10 31 31 HOH HOH . J 5 HOH A 11 32 32 HOH HOH . J 5 HOH A 12 34 34 HOH HOH . J 5 HOH A 13 35 35 HOH HOH . J 5 HOH A 14 36 36 HOH HOH . J 5 HOH A 15 37 37 HOH HOH . J 5 HOH A 16 38 38 HOH HOH . J 5 HOH A 17 39 39 HOH HOH . J 5 HOH A 18 41 41 HOH HOH . J 5 HOH A 19 42 42 HOH HOH . J 5 HOH A 20 44 44 HOH HOH . J 5 HOH A 21 47 47 HOH HOH . J 5 HOH A 22 48 48 HOH HOH . J 5 HOH A 23 50 50 HOH HOH . J 5 HOH A 24 51 51 HOH HOH . J 5 HOH A 25 52 52 HOH HOH . J 5 HOH A 26 56 56 HOH HOH . J 5 HOH A 27 57 57 HOH HOH . J 5 HOH A 28 58 58 HOH HOH . J 5 HOH A 29 59 59 HOH HOH . J 5 HOH A 30 60 60 HOH HOH . J 5 HOH A 31 61 61 HOH HOH . J 5 HOH A 32 62 62 HOH HOH . J 5 HOH A 33 64 64 HOH HOH . J 5 HOH A 34 65 65 HOH HOH . J 5 HOH A 35 66 66 HOH HOH . J 5 HOH A 36 68 68 HOH HOH . J 5 HOH A 37 69 69 HOH HOH . J 5 HOH A 38 70 70 HOH HOH . J 5 HOH A 39 71 71 HOH HOH . J 5 HOH A 40 72 72 HOH HOH . J 5 HOH A 41 73 73 HOH HOH . J 5 HOH A 42 74 74 HOH HOH . J 5 HOH A 43 75 75 HOH HOH . J 5 HOH A 44 76 76 HOH HOH . J 5 HOH A 45 81 81 HOH HOH . J 5 HOH A 46 83 83 HOH HOH . J 5 HOH A 47 84 84 HOH HOH . J 5 HOH A 48 87 87 HOH HOH . J 5 HOH A 49 92 92 HOH HOH . J 5 HOH A 50 93 93 HOH HOH . J 5 HOH A 51 94 94 HOH HOH . J 5 HOH A 52 95 95 HOH HOH . J 5 HOH A 53 96 96 HOH HOH . J 5 HOH A 54 97 97 HOH HOH . J 5 HOH A 55 98 98 HOH HOH . J 5 HOH A 56 99 99 HOH HOH . J 5 HOH A 57 100 100 HOH HOH . J 5 HOH A 58 103 103 HOH HOH . J 5 HOH A 59 106 106 HOH HOH . J 5 HOH A 60 107 107 HOH HOH . J 5 HOH A 61 108 108 HOH HOH . J 5 HOH A 62 113 113 HOH HOH . J 5 HOH A 63 114 114 HOH HOH . J 5 HOH A 64 115 115 HOH HOH . J 5 HOH A 65 116 116 HOH HOH . J 5 HOH A 66 117 117 HOH HOH . J 5 HOH A 67 118 118 HOH HOH . J 5 HOH A 68 119 119 HOH HOH . J 5 HOH A 69 120 120 HOH HOH . J 5 HOH A 70 121 121 HOH HOH . J 5 HOH A 71 122 122 HOH HOH . K 5 HOH B 1 20 20 HOH HOH . K 5 HOH B 2 21 21 HOH HOH . K 5 HOH B 3 26 26 HOH HOH . K 5 HOH B 4 28 28 HOH HOH . K 5 HOH B 5 33 33 HOH HOH . K 5 HOH B 6 40 40 HOH HOH . K 5 HOH B 7 43 43 HOH HOH . K 5 HOH B 8 45 45 HOH HOH . K 5 HOH B 9 46 46 HOH HOH . K 5 HOH B 10 49 49 HOH HOH . K 5 HOH B 11 53 53 HOH HOH . K 5 HOH B 12 54 54 HOH HOH . K 5 HOH B 13 55 55 HOH HOH . K 5 HOH B 14 63 63 HOH HOH . K 5 HOH B 15 67 67 HOH HOH . K 5 HOH B 16 77 77 HOH HOH . K 5 HOH B 17 78 78 HOH HOH . K 5 HOH B 18 79 79 HOH HOH . K 5 HOH B 19 80 80 HOH HOH . K 5 HOH B 20 82 82 HOH HOH . K 5 HOH B 21 85 85 HOH HOH . K 5 HOH B 22 86 86 HOH HOH . K 5 HOH B 23 88 88 HOH HOH . K 5 HOH B 24 89 89 HOH HOH . K 5 HOH B 25 90 90 HOH HOH . K 5 HOH B 26 91 91 HOH HOH . K 5 HOH B 27 101 101 HOH HOH . K 5 HOH B 28 102 102 HOH HOH . K 5 HOH B 29 104 104 HOH HOH . K 5 HOH B 30 105 105 HOH HOH . K 5 HOH B 31 109 109 HOH HOH . K 5 HOH B 32 110 110 HOH HOH . K 5 HOH B 33 111 111 HOH HOH . K 5 HOH B 34 112 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . C 2 -0.554 15.049 10.935 1 15.93 ? C2 BGC 7 A 1 HETATM 2 C C3 BGC . . . C 2 0.754 14.96 10.11 1 16.18 ? C3 BGC 7 A 1 HETATM 3 C C4 BGC . . . C 2 0.886 16.103 9.057 1 14.71 ? C4 BGC 7 A 1 HETATM 4 C C5 BGC . . . C 2 0.575 17.451 9.716 1 14.05 ? C5 BGC 7 A 1 HETATM 5 C C6 BGC . . . C 2 0.494 18.552 8.639 1 15.11 ? C6 BGC 7 A 1 HETATM 6 C C1 BGC . . . C 2 -0.624 16.465 11.572 1 15.21 ? C1 BGC 7 A 1 HETATM 7 O O1 BGC . . . C 2 -1.825 16.621 12.357 1 13.69 ? O1 BGC 7 A 1 HETATM 8 O O2 BGC . . . C 2 -0.564 14.057 11.978 1 17.06 ? O2 BGC 7 A 1 HETATM 9 O O3 BGC . . . C 2 0.834 13.662 9.53 1 16.77 ? O3 BGC 7 A 1 HETATM 10 O O4 BGC . . . C 2 2.185 16.224 8.426 1 13.79 ? O4 BGC 7 A 1 HETATM 11 O O5 BGC . . . C 2 -0.588 17.444 10.545 1 14.46 ? O5 BGC 7 A 1 HETATM 12 O O6 BGC . . . C 2 0.413 19.803 9.294 1 15.1 ? O6 BGC 7 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #