data_319D # _model_server_result.job_id HJoCdhhF6QDwvSAErMpv8g _model_server_result.datetime_utc '2025-07-10 04:47:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 319d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 319D # _exptl.entry_id 319D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.314 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 319D _cell.length_a 24.36 _cell.length_b 44.29 _cell.length_c 48.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 319D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 5 A DG 5 1_555 A P CBR 6 A CBR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 A O3' CBR 6 A CBR 6 1_555 A P DC 7 A DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.625 ? covale ? covale3 B O3' DG 5 B DG 15 1_555 B P CBR 6 B CBR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale4 B O3' CBR 6 B CBR 16 1_555 B P DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 5 A DG 5 1_555 B N3 CBR 6 B CBR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 5 A DG 5 1_555 B O2 CBR 6 B CBR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 5 A DG 5 1_555 B N4 CBR 6 B CBR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 CBR 6 A CBR 6 1_555 B N1 DG 5 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 CBR 6 A CBR 6 1_555 B O6 DG 5 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 CBR 6 A CBR 6 1_555 B N2 DG 5 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 7 A DC 7 1_555 B N1 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 7 A DC 7 1_555 B O6 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 7 A DC 7 1_555 B N2 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 8 A DC 8 1_555 B N1 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 8 A DC 8 1_555 B O6 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 8 A DC 8 1_555 B N2 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 10 A DG 10 1_555 B N3 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 10 A DG 10 1_555 B O2 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 10 A DG 10 1_555 B N4 DC 1 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H24 N4' _chem_comp.formula_weight 188.314 _chem_comp.id SPE _chem_comp.mon_nstd_flag . _chem_comp.name THERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPE sing 112 n n N1 HN11 SPE sing 113 n n N1 HN12 SPE sing 114 n n C2 C3 SPE sing 115 n n C2 H21 SPE sing 116 n n C2 H22 SPE sing 117 n n C3 C4 SPE sing 118 n n C3 H31 SPE sing 119 n n C3 H32 SPE sing 120 n n C4 N5 SPE sing 121 n n C4 H41 SPE sing 122 n n C4 H42 SPE sing 123 n n N5 C6 SPE sing 124 n n N5 HN5 SPE sing 125 n n C6 C7 SPE sing 126 n n C6 H61 SPE sing 127 n n C6 H62 SPE sing 128 n n C7 C8 SPE sing 129 n n C7 H71 SPE sing 130 n n C7 H72 SPE sing 131 n n C8 N9 SPE sing 132 n n C8 H81 SPE sing 133 n n C8 H82 SPE sing 134 n n N9 C10 SPE sing 135 n n N9 HN9 SPE sing 136 n n C10 C11 SPE sing 137 n n C10 H101 SPE sing 138 n n C10 H102 SPE sing 139 n n C11 C12 SPE sing 140 n n C11 H111 SPE sing 141 n n C11 H112 SPE sing 142 n n C12 N13 SPE sing 143 n n C12 H121 SPE sing 144 n n C12 H122 SPE sing 145 n n N13 HN31 SPE sing 146 n n N13 HN32 SPE sing 147 n n # _atom_sites.entry_id 319D _atom_sites.fract_transf_matrix[1][1] 0.041051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPE B 1 21 21 SPE SPE . D 3 HOH A 1 23 23 HOH HOH . D 3 HOH A 2 25 25 HOH HOH . D 3 HOH A 3 27 27 HOH HOH . D 3 HOH A 4 28 28 HOH HOH . D 3 HOH A 5 30 30 HOH HOH . D 3 HOH A 6 32 32 HOH HOH . D 3 HOH A 7 34 34 HOH HOH . D 3 HOH A 8 37 37 HOH HOH . D 3 HOH A 9 38 38 HOH HOH . D 3 HOH A 10 42 42 HOH HOH . D 3 HOH A 11 43 43 HOH HOH . D 3 HOH A 12 44 44 HOH HOH . D 3 HOH A 13 46 46 HOH HOH . D 3 HOH A 14 47 47 HOH HOH . D 3 HOH A 15 48 48 HOH HOH . D 3 HOH A 16 49 49 HOH HOH . D 3 HOH A 17 51 51 HOH HOH . D 3 HOH A 18 52 52 HOH HOH . D 3 HOH A 19 55 55 HOH HOH . D 3 HOH A 20 56 56 HOH HOH . D 3 HOH A 21 58 58 HOH HOH . D 3 HOH A 22 64 64 HOH HOH . D 3 HOH A 23 65 65 HOH HOH . D 3 HOH A 24 67 67 HOH HOH . D 3 HOH A 25 68 68 HOH HOH . D 3 HOH A 26 69 69 HOH HOH . D 3 HOH A 27 71 71 HOH HOH . D 3 HOH A 28 72 72 HOH HOH . D 3 HOH A 29 73 73 HOH HOH . D 3 HOH A 30 78 78 HOH HOH . D 3 HOH A 31 83 83 HOH HOH . D 3 HOH A 32 84 84 HOH HOH . D 3 HOH A 33 96 96 HOH HOH . D 3 HOH A 34 97 97 HOH HOH . D 3 HOH A 35 99 99 HOH HOH . D 3 HOH A 36 100 100 HOH HOH . D 3 HOH A 37 101 101 HOH HOH . D 3 HOH A 38 102 102 HOH HOH . D 3 HOH A 39 103 103 HOH HOH . D 3 HOH A 40 104 104 HOH HOH . D 3 HOH A 41 105 105 HOH HOH . D 3 HOH A 42 106 106 HOH HOH . D 3 HOH A 43 107 107 HOH HOH . D 3 HOH A 44 108 108 HOH HOH . D 3 HOH A 45 109 109 HOH HOH . D 3 HOH A 46 111 111 HOH HOH . D 3 HOH A 47 113 113 HOH HOH . E 3 HOH B 1 22 22 HOH HOH . E 3 HOH B 2 24 24 HOH HOH . E 3 HOH B 3 26 26 HOH HOH . E 3 HOH B 4 29 29 HOH HOH . E 3 HOH B 5 31 31 HOH HOH . E 3 HOH B 6 33 33 HOH HOH . E 3 HOH B 7 35 35 HOH HOH . E 3 HOH B 8 36 36 HOH HOH . E 3 HOH B 9 39 39 HOH HOH . E 3 HOH B 10 40 40 HOH HOH . E 3 HOH B 11 41 41 HOH HOH . E 3 HOH B 12 45 45 HOH HOH . E 3 HOH B 13 50 50 HOH HOH . E 3 HOH B 14 53 53 HOH HOH . E 3 HOH B 15 54 54 HOH HOH . E 3 HOH B 16 57 57 HOH HOH . E 3 HOH B 17 59 59 HOH HOH . E 3 HOH B 18 60 60 HOH HOH . E 3 HOH B 19 61 61 HOH HOH . E 3 HOH B 20 62 62 HOH HOH . E 3 HOH B 21 63 63 HOH HOH . E 3 HOH B 22 66 66 HOH HOH . E 3 HOH B 23 70 70 HOH HOH . E 3 HOH B 24 74 74 HOH HOH . E 3 HOH B 25 75 75 HOH HOH . E 3 HOH B 26 76 76 HOH HOH . E 3 HOH B 27 77 77 HOH HOH . E 3 HOH B 28 79 79 HOH HOH . E 3 HOH B 29 80 80 HOH HOH . E 3 HOH B 30 81 81 HOH HOH . E 3 HOH B 31 82 82 HOH HOH . E 3 HOH B 32 85 85 HOH HOH . E 3 HOH B 33 86 86 HOH HOH . E 3 HOH B 34 87 87 HOH HOH . E 3 HOH B 35 88 88 HOH HOH . E 3 HOH B 36 89 89 HOH HOH . E 3 HOH B 37 90 90 HOH HOH . E 3 HOH B 38 91 91 HOH HOH . E 3 HOH B 39 92 92 HOH HOH . E 3 HOH B 40 93 93 HOH HOH . E 3 HOH B 41 94 94 HOH HOH . E 3 HOH B 42 95 95 HOH HOH . E 3 HOH B 43 98 98 HOH HOH . E 3 HOH B 44 110 110 HOH HOH . E 3 HOH B 45 112 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPE . . . C 2 -6.415 10.745 27.521 1 44.2 ? N1 SPE 21 B 1 HETATM 2 C C2 SPE . . . C 2 -6.832 9.355 27.595 1 45.78 ? C2 SPE 21 B 1 HETATM 3 C C3 SPE . . . C 2 -7.684 8.986 26.386 1 45.6 ? C3 SPE 21 B 1 HETATM 4 C C4 SPE . . . C 2 -8.098 7.517 26.349 1 44.56 ? C4 SPE 21 B 1 HETATM 5 N N5 SPE . . . C 2 -8.928 7.241 25.187 1 41.47 ? N5 SPE 21 B 1 HETATM 6 C C6 SPE . . . C 2 -8.503 5.984 24.589 1 39 ? C6 SPE 21 B 1 HETATM 7 C C7 SPE . . . C 2 -9.09 5.803 23.199 1 42.43 ? C7 SPE 21 B 1 HETATM 8 C C8 SPE . . . C 2 -8.205 4.949 22.289 1 45.64 ? C8 SPE 21 B 1 HETATM 9 N N9 SPE . . . C 2 -8.088 5.657 21.021 1 44.96 ? N9 SPE 21 B 1 HETATM 10 C C10 SPE . . . C 2 -7.25 4.95 20.066 1 46.32 ? C10 SPE 21 B 1 HETATM 11 C C11 SPE . . . C 2 -7.336 5.621 18.682 1 46.27 ? C11 SPE 21 B 1 HETATM 12 C C12 SPE . . . C 2 -7.001 4.657 17.547 1 42.62 ? C12 SPE 21 B 1 HETATM 13 N N13 SPE . . . C 2 -6.96 5.246 16.218 1 45.77 ? N13 SPE 21 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 13 #