data_351C # _model_server_result.job_id 3aWutHQTofFIEvfvKs_gMA _model_server_result.datetime_utc '2025-07-30 22:08:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 351c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":0}' # _entry.id 351C # _exptl.entry_id 351C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 351C _cell.length_a 29.5 _cell.length_b 49.27 _cell.length_c 49.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 351C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CAB HEM . A HEM 0 1_555 A SG CYS 12 A CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 B CAC HEM . A HEM 0 1_555 A SG CYS 15 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc1 B FE HEM . A HEM 0 1_555 A NE2 HIS 16 A HIS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 B FE HEM . A HEM 0 1_555 A SD MET 61 A MET 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 351C _atom_sites.fract_transf_matrix[1][1] 0.033898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 0 0 HEM HEM . C 3 HOH A 1 83 1 HOH HOH . C 3 HOH A 2 84 2 HOH HOH . C 3 HOH A 3 85 3 HOH HOH . C 3 HOH A 4 86 4 HOH HOH . C 3 HOH A 5 87 5 HOH HOH . C 3 HOH A 6 88 6 HOH HOH . C 3 HOH A 7 89 7 HOH HOH . C 3 HOH A 8 90 8 HOH HOH . C 3 HOH A 9 91 9 HOH HOH . C 3 HOH A 10 92 10 HOH HOH . C 3 HOH A 11 93 11 HOH HOH . C 3 HOH A 12 94 12 HOH HOH . C 3 HOH A 13 95 13 HOH HOH . C 3 HOH A 14 96 14 HOH HOH . C 3 HOH A 15 97 15 HOH HOH . C 3 HOH A 16 98 16 HOH HOH . C 3 HOH A 17 99 17 HOH HOH . C 3 HOH A 18 100 18 HOH HOH . C 3 HOH A 19 101 19 HOH HOH . C 3 HOH A 20 102 20 HOH HOH . C 3 HOH A 21 103 21 HOH HOH . C 3 HOH A 22 104 22 HOH HOH . C 3 HOH A 23 105 23 HOH HOH . C 3 HOH A 24 106 24 HOH HOH . C 3 HOH A 25 107 25 HOH HOH . C 3 HOH A 26 108 26 HOH HOH . C 3 HOH A 27 109 27 HOH HOH . C 3 HOH A 28 110 28 HOH HOH . C 3 HOH A 29 111 29 HOH HOH . C 3 HOH A 30 112 30 HOH HOH . C 3 HOH A 31 113 31 HOH HOH . C 3 HOH A 32 114 32 HOH HOH . C 3 HOH A 33 115 33 HOH HOH . C 3 HOH A 34 116 34 HOH HOH . C 3 HOH A 35 117 35 HOH HOH . C 3 HOH A 36 118 36 HOH HOH . C 3 HOH A 37 119 37 HOH HOH . C 3 HOH A 38 120 38 HOH HOH . C 3 HOH A 39 121 39 HOH HOH . C 3 HOH A 40 122 40 HOH HOH . C 3 HOH A 41 123 41 HOH HOH . C 3 HOH A 42 124 42 HOH HOH . C 3 HOH A 43 125 43 HOH HOH . C 3 HOH A 44 126 44 HOH HOH . C 3 HOH A 45 127 45 HOH HOH . C 3 HOH A 46 128 46 HOH HOH . C 3 HOH A 47 129 47 HOH HOH . C 3 HOH A 48 130 48 HOH HOH . C 3 HOH A 49 131 49 HOH HOH . C 3 HOH A 50 132 50 HOH HOH . C 3 HOH A 51 133 51 HOH HOH . C 3 HOH A 52 134 52 HOH HOH . C 3 HOH A 53 135 53 HOH HOH . C 3 HOH A 54 136 54 HOH HOH . C 3 HOH A 55 137 55 HOH HOH . C 3 HOH A 56 138 56 HOH HOH . C 3 HOH A 57 139 57 HOH HOH . C 3 HOH A 58 140 58 HOH HOH . C 3 HOH A 59 141 59 HOH HOH . C 3 HOH A 60 142 60 HOH HOH . C 3 HOH A 61 143 61 HOH HOH . C 3 HOH A 62 144 62 HOH HOH . C 3 HOH A 63 145 63 HOH HOH . C 3 HOH A 64 146 64 HOH HOH . C 3 HOH A 65 147 65 HOH HOH . C 3 HOH A 66 148 66 HOH HOH . C 3 HOH A 67 149 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 11.705 -15.247 17.135 1 6.05 ? CHA HEM 0 A 1 HETATM 2 C CHB HEM . . . B 2 7.609 -13.457 15.336 1 10.65 ? CHB HEM 0 A 1 HETATM 3 C CHC HEM . . . B 2 6.886 -11.003 19.43 1 5.93 ? CHC HEM 0 A 1 HETATM 4 C CHD HEM . . . B 2 11.262 -12.316 20.955 1 11.16 ? CHD HEM 0 A 1 HETATM 5 C C1A HEM . . . B 2 10.647 -14.993 16.285 1 7.24 ? C1A HEM 0 A 1 HETATM 6 C C2A HEM . . . B 2 10.462 -15.551 15.035 1 9.25 ? C2A HEM 0 A 1 HETATM 7 C C3A HEM . . . B 2 9.322 -14.979 14.496 1 7.86 ? C3A HEM 0 A 1 HETATM 8 C C4A HEM . . . B 2 8.792 -14.154 15.459 1 11.77 ? C4A HEM 0 A 1 HETATM 9 C CMA HEM . . . B 2 8.722 -15.221 13.128 1 6.08 ? CMA HEM 0 A 1 HETATM 10 C CAA HEM . . . B 2 11.327 -16.6 14.394 1 7.8 ? CAA HEM 0 A 1 HETATM 11 C CBA HEM . . . B 2 10.913 -17.951 14.931 1 11.88 ? CBA HEM 0 A 1 HETATM 12 C CGA HEM . . . B 2 11.757 -19.049 14.31 1 25.65 ? CGA HEM 0 A 1 HETATM 13 O O1A HEM . . . B 2 12.606 -18.742 13.48 1 20.61 ? O1A HEM 0 A 1 HETATM 14 O O2A HEM . . . B 2 11.154 -20.173 14.12 1 18.51 ? O2A HEM 0 A 1 HETATM 15 C C1B HEM . . . B 2 7.06 -12.605 16.272 1 12.26 ? C1B HEM 0 A 1 HETATM 16 C C2B HEM . . . B 2 5.813 -11.987 16.164 1 5.44 ? C2B HEM 0 A 1 HETATM 17 C C3B HEM . . . B 2 5.554 -11.363 17.382 1 -0.41 ? C3B HEM 0 A 1 HETATM 18 C C4B HEM . . . B 2 6.7 -11.518 18.162 1 3.38 ? C4B HEM 0 A 1 HETATM 19 C CMB HEM . . . B 2 4.877 -12.076 14.978 1 6.89 ? CMB HEM 0 A 1 HETATM 20 C CAB HEM . . . B 2 4.282 -10.647 17.807 1 8 ? CAB HEM 0 A 1 HETATM 21 C CBB HEM . . . B 2 3.058 -11.55 17.913 1 6.02 ? CBB HEM 0 A 1 HETATM 22 C C1C HEM . . . B 2 8.014 -11.167 20.215 1 7.49 ? C1C HEM 0 A 1 HETATM 23 C C2C HEM . . . B 2 8.233 -10.548 21.439 1 3.93 ? C2C HEM 0 A 1 HETATM 24 C C3C HEM . . . B 2 9.538 -10.804 21.786 1 7.76 ? C3C HEM 0 A 1 HETATM 25 C C4C HEM . . . B 2 10.029 -11.717 20.883 1 11.72 ? C4C HEM 0 A 1 HETATM 26 C CMC HEM . . . B 2 7.296 -9.624 22.178 1 8.79 ? CMC HEM 0 A 1 HETATM 27 C CAC HEM . . . B 2 10.314 -10.142 22.9 1 2.64 ? CAC HEM 0 A 1 HETATM 28 C CBC HEM . . . B 2 9.856 -10.481 24.303 1 10.86 ? CBC HEM 0 A 1 HETATM 29 C C1D HEM . . . B 2 11.751 -13.246 20.066 1 6.52 ? C1D HEM 0 A 1 HETATM 30 C C2D HEM . . . B 2 12.957 -13.92 20.21 1 6.16 ? C2D HEM 0 A 1 HETATM 31 C C3D HEM . . . B 2 13.035 -14.83 19.16 1 4.42 ? C3D HEM 0 A 1 HETATM 32 C C4D HEM . . . B 2 11.925 -14.622 18.348 1 8.38 ? C4D HEM 0 A 1 HETATM 33 C CMD HEM . . . B 2 13.973 -13.709 21.321 1 6.25 ? CMD HEM 0 A 1 HETATM 34 C CAD HEM . . . B 2 14.131 -15.841 18.905 1 10.6 ? CAD HEM 0 A 1 HETATM 35 C CBD HEM . . . B 2 13.737 -17.234 19.374 1 7.35 ? CBD HEM 0 A 1 HETATM 36 C CGD HEM . . . B 2 14.831 -18.244 19.019 1 8.3 ? CGD HEM 0 A 1 HETATM 37 O O1D HEM . . . B 2 14.501 -19.413 18.804 1 8.83 ? O1D HEM 0 A 1 HETATM 38 O O2D HEM . . . B 2 16.113 -17.959 19.183 1 17.28 ? O2D HEM 0 A 1 HETATM 39 N NA HEM . . . B 2 9.628 -14.14 16.524 1 5.03 ? NA HEM 0 A 1 HETATM 40 N NB HEM . . . B 2 7.596 -12.302 17.486 1 6.07 ? NB HEM 0 A 1 HETATM 41 N NC HEM . . . B 2 9.124 -11.881 19.898 1 2.82 ? NC HEM 0 A 1 HETATM 42 N ND HEM . . . B 2 11.12 -13.672 18.925 1 6.96 ? ND HEM 0 A 1 HETATM 43 FE FE HEM . . . B 2 9.405 -12.974 18.219 1 6.47 ? FE HEM 0 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #