data_358D # _model_server_result.job_id lPoyPpU6sxVbCTBGFryb-w _model_server_result.datetime_utc '2024-11-12 21:16:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 358d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 358D # _exptl.entry_id 358D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 358D _cell.length_a 32.13 _cell.length_b 32.13 _cell.length_c 143.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 358D _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 1 A DC 1 1_555 A P CBR 2 A CBR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale2 A O3' CBR 2 A CBR 2 1_555 A P DC 3 A DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale3 B O3' DC 1 B DC 11 1_555 B P CBR 2 B CBR 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale4 B O3' CBR 2 B CBR 12 1_555 B P DC 3 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 110 n n C1 N2 NT sing 111 n n C1 N3 NT sing 112 n n N1 HN1 NT sing 113 n n N2 HN21 NT sing 114 n n N2 HN22 NT sing 115 n n N3 C2 NT sing 116 n n N3 HN3 NT sing 117 n n C2 C3 NT sing 118 n n C2 H21 NT sing 119 n n C2 H22 NT sing 120 n n C3 O1 NT doub 121 n n C3 N4 NT sing 122 n n N4 C4 NT sing 123 n n N4 HN4 NT sing 124 n n C4 C5 NT sing 125 n y C4 C7 NT doub 126 n y C5 C6 NT doub 127 n y C5 H5 NT sing 128 n n C6 N5 NT sing 129 n y C6 C9 NT sing 130 n n N5 C8 NT sing 131 n n N5 C7 NT sing 132 n y C8 H81 NT sing 133 n n C8 H82 NT sing 134 n n C8 H83 NT sing 135 n n C7 H7 NT sing 136 n n C9 O2 NT doub 137 n n C9 N6 NT sing 138 n n N6 C10 NT sing 139 n n N6 HN6 NT sing 140 n n C10 C11 NT sing 141 n y C10 C13 NT doub 142 n y C11 C12 NT doub 143 n y C11 H11 NT sing 144 n n C12 N7 NT sing 145 n y C12 C15 NT sing 146 n n N7 C14 NT sing 147 n n N7 C13 NT sing 148 n y C14 H141 NT sing 149 n n C14 H142 NT sing 150 n n C14 H143 NT sing 151 n n C13 H13 NT sing 152 n n C15 O3 NT doub 153 n n C15 N8 NT sing 154 n n N8 C16 NT sing 155 n n N8 HN8 NT sing 156 n n C16 C17 NT sing 157 n n C16 H161 NT sing 158 n n C16 H162 NT sing 159 n n C17 C18 NT sing 160 n n C17 H171 NT sing 161 n n C17 H172 NT sing 162 n n C18 N9 NT doub 163 n n C18 N10 NT sing 164 n n N9 HN9 NT sing 165 n n N10 HN01 NT sing 166 n n N10 HN02 NT sing 167 n n # _atom_sites.entry_id 358D _atom_sites.fract_transf_matrix[1][1] 0.031124 _atom_sites.fract_transf_matrix[1][2] 0.017969 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT A 1 21 21 NT NT . D 2 NT A 1 22 22 NT NT . E 3 HOH A 1 23 23 HOH HOH . E 3 HOH A 2 24 24 HOH HOH . E 3 HOH A 3 25 25 HOH HOH . E 3 HOH A 4 26 26 HOH HOH . E 3 HOH A 5 30 30 HOH HOH . E 3 HOH A 6 32 32 HOH HOH . E 3 HOH A 7 33 33 HOH HOH . E 3 HOH A 8 34 34 HOH HOH . E 3 HOH A 9 37 37 HOH HOH . E 3 HOH A 10 38 38 HOH HOH . E 3 HOH A 11 39 39 HOH HOH . E 3 HOH A 12 40 40 HOH HOH . E 3 HOH A 13 41 41 HOH HOH . E 3 HOH A 14 43 43 HOH HOH . E 3 HOH A 15 45 45 HOH HOH . E 3 HOH A 16 49 49 HOH HOH . E 3 HOH A 17 51 51 HOH HOH . E 3 HOH A 18 52 52 HOH HOH . E 3 HOH A 19 53 53 HOH HOH . E 3 HOH A 20 54 54 HOH HOH . E 3 HOH A 21 55 55 HOH HOH . E 3 HOH A 22 56 56 HOH HOH . E 3 HOH A 23 57 57 HOH HOH . E 3 HOH A 24 60 60 HOH HOH . F 3 HOH B 1 27 27 HOH HOH . F 3 HOH B 2 28 28 HOH HOH . F 3 HOH B 3 29 29 HOH HOH . F 3 HOH B 4 31 31 HOH HOH . F 3 HOH B 5 35 35 HOH HOH . F 3 HOH B 6 36 36 HOH HOH . F 3 HOH B 7 42 42 HOH HOH . F 3 HOH B 8 44 44 HOH HOH . F 3 HOH B 9 46 46 HOH HOH . F 3 HOH B 10 47 47 HOH HOH . F 3 HOH B 11 48 48 HOH HOH . F 3 HOH B 12 50 50 HOH HOH . F 3 HOH B 13 58 58 HOH HOH . F 3 HOH B 14 59 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . C 2 -0.981 15.477 4.153 1 27.54 ? C1 NT 21 A 1 HETATM 2 N N1 NT . . . C 2 -1.955 14.709 4.665 1 30.25 ? N1 NT 21 A 1 HETATM 3 N N2 NT . . . C 2 -0.915 16.786 4.418 1 22.07 ? N2 NT 21 A 1 HETATM 4 N N3 NT . . . C 2 -0.05 14.914 3.374 1 25.12 ? N3 NT 21 A 1 HETATM 5 C C2 NT . . . C 2 0.012 15.117 1.944 1 20.01 ? C2 NT 21 A 1 HETATM 6 C C3 NT . . . C 2 -0.284 13.784 1.276 1 19.25 ? C3 NT 21 A 1 HETATM 7 O O1 NT . . . C 2 -1.166 13.094 1.79 1 20.89 ? O1 NT 21 A 1 HETATM 8 N N4 NT . . . C 2 0.489 13.488 0.203 1 22.4 ? N4 NT 21 A 1 HETATM 9 C C4 NT . . . C 2 0.605 12.419 -0.712 1 22.36 ? C4 NT 21 A 1 HETATM 10 C C5 NT . . . C 2 1.623 12.367 -1.661 1 21.7 ? C5 NT 21 A 1 HETATM 11 C C6 NT . . . C 2 1.519 11.235 -2.455 1 21.5 ? C6 NT 21 A 1 HETATM 12 N N5 NT . . . C 2 0.383 10.542 -1.968 1 20.55 ? N5 NT 21 A 1 HETATM 13 C C8 NT . . . C 2 -0.22 9.221 -2.433 1 15.68 ? C8 NT 21 A 1 HETATM 14 C C7 NT . . . C 2 -0.164 11.23 -0.948 1 22.75 ? C7 NT 21 A 1 HETATM 15 C C9 NT . . . C 2 2.355 10.822 -3.599 1 19.45 ? C9 NT 21 A 1 HETATM 16 O O2 NT . . . C 2 1.824 10.37 -4.616 1 14.37 ? O2 NT 21 A 1 HETATM 17 N N6 NT . . . C 2 3.699 10.984 -3.488 1 19.64 ? N6 NT 21 A 1 HETATM 18 C C10 NT . . . C 2 4.594 10.618 -4.51 1 25.19 ? C10 NT 21 A 1 HETATM 19 C C11 NT . . . C 2 5.985 10.472 -4.501 1 27.17 ? C11 NT 21 A 1 HETATM 20 C C12 NT . . . C 2 6.447 10.07 -5.755 1 28.31 ? C12 NT 21 A 1 HETATM 21 N N7 NT . . . C 2 5.287 9.966 -6.566 1 30.19 ? N7 NT 21 A 1 HETATM 22 C C14 NT . . . C 2 5.1 9.572 -8.036 1 28.15 ? C14 NT 21 A 1 HETATM 23 C C13 NT . . . C 2 4.211 10.283 -5.845 1 27.16 ? C13 NT 21 A 1 HETATM 24 C C15 NT . . . C 2 7.786 9.765 -6.291 1 27.54 ? C15 NT 21 A 1 HETATM 25 O O3 NT . . . C 2 7.918 9.236 -7.394 1 29.89 ? O3 NT 21 A 1 HETATM 26 N N8 NT . . . C 2 8.863 10.077 -5.543 1 25.53 ? N8 NT 21 A 1 HETATM 27 C C16 NT . . . C 2 10.226 9.786 -5.978 1 22.63 ? C16 NT 21 A 1 HETATM 28 C C17 NT . . . C 2 10.938 9.647 -7.325 1 14.39 ? C17 NT 21 A 1 HETATM 29 C C18 NT . . . C 2 12.436 9.357 -7.241 1 15.66 ? C18 NT 21 A 1 HETATM 30 N N9 NT . . . C 2 13.126 9.455 -6.109 1 15.68 ? N9 NT 21 A 1 HETATM 31 N N10 NT . . . C 2 13.113 9.025 -8.332 1 15.18 ? N10 NT 21 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #