data_367D # _model_server_result.job_id Ergv7eXHo1K-7hxOinuXTg _model_server_result.datetime_utc '2024-11-04 22:52:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 367d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":13}' # _entry.id 367D # _exptl.entry_id 367D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 367D _cell.length_a 30.096 _cell.length_b 30.096 _cell.length_c 39.547 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 367D _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C5 DU 3 A DU 3 1_555 D BR BR . A BR 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? covale ? covale2 B C5 DU 3 B DU 9 1_555 G BR BR . B BR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DU 3 A DU 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DU 3 A DU 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 B N3 DU 3 B DU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 B O4 DU 3 B DU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H21 Br N4 O 2' _chem_comp.formula_weight 389.29 _chem_comp.id DA5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5BR20686 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DA5 doub 39 n y C1 C11 DA5 sing 40 n y C1 H1 DA5 sing 41 n n C2 C3 DA5 sing 42 n y C2 H2 DA5 sing 43 n n C3 C4 DA5 doub 44 n y C3 H3 DA5 sing 45 n n C4 C12 DA5 sing 46 n y C4 CD1 DA5 sing 47 n n C5 C6 DA5 doub 48 n y C5 C14 DA5 sing 49 n y C5 BR DA5 sing 50 n n C6 C7 DA5 sing 51 n y C6 H6 DA5 sing 52 n n C7 C8 DA5 doub 53 n y C7 H7 DA5 sing 54 n n C8 C13 DA5 sing 55 n y C8 H8 DA5 sing 56 n n C9 N9 DA5 sing 57 n n C9 C11 DA5 doub 58 n y C9 C13 DA5 sing 59 n y N9 HN91 DA5 sing 60 n n N9 HN92 DA5 sing 61 n n N9 HN93 DA5 sing 62 n n N10 C12 DA5 doub 63 n y N10 C14 DA5 sing 64 n y N10 H10 DA5 sing 65 n n C11 C12 DA5 sing 66 n y C13 C14 DA5 doub 67 n y CD1 OD1 DA5 doub 68 n n CD1 ND1 DA5 sing 69 n n ND1 CD2 DA5 sing 70 n n ND1 HND1 DA5 sing 71 n n CD2 CD3 DA5 sing 72 n n CD2 HD21 DA5 sing 73 n n CD2 HD22 DA5 sing 74 n n CD3 ND2 DA5 sing 75 n n CD3 HD31 DA5 sing 76 n n CD3 HD32 DA5 sing 77 n n ND2 CD7 DA5 sing 78 n n ND2 CD8 DA5 sing 79 n n CD7 HD71 DA5 sing 80 n n CD7 HD72 DA5 sing 81 n n CD7 HD73 DA5 sing 82 n n CD8 HD81 DA5 sing 83 n n CD8 HD82 DA5 sing 84 n n CD8 HD83 DA5 sing 85 n n # _atom_sites.entry_id 367D _atom_sites.fract_transf_matrix[1][1] 0.033227 _atom_sites.fract_transf_matrix[1][2] 0.019184 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DA5 A 1 14 14 DA5 DA5 . D 3 BR A 1 15 3 BR BRO . E 2 DA5 B 1 13 13 DA5 DA5 . F 2 DA5 B 1 15 15 DA5 DA5 . G 3 BR B 1 16 9 BR BRO . H 4 HOH A 1 17 17 HOH HOH . H 4 HOH A 2 18 18 HOH HOH . H 4 HOH A 3 19 19 HOH HOH . H 4 HOH A 4 20 20 HOH HOH . H 4 HOH A 5 24 24 HOH HOH . H 4 HOH A 6 26 26 HOH HOH . H 4 HOH A 7 27 27 HOH HOH . H 4 HOH A 8 29 29 HOH HOH . H 4 HOH A 9 31 31 HOH HOH . H 4 HOH A 10 32 32 HOH HOH . H 4 HOH A 11 33 33 HOH HOH . H 4 HOH A 12 34 34 HOH HOH . H 4 HOH A 13 37 37 HOH HOH . H 4 HOH A 14 38 38 HOH HOH . H 4 HOH A 15 39 39 HOH HOH . H 4 HOH A 16 45 45 HOH HOH . H 4 HOH A 17 47 47 HOH HOH . H 4 HOH A 18 48 48 HOH HOH . H 4 HOH A 19 49 49 HOH HOH . H 4 HOH A 20 50 50 HOH HOH . H 4 HOH A 21 51 51 HOH HOH . H 4 HOH A 22 53 53 HOH HOH . H 4 HOH A 23 54 54 HOH HOH . H 4 HOH A 24 58 58 HOH HOH . H 4 HOH A 25 59 59 HOH HOH . H 4 HOH A 26 62 62 HOH HOH . H 4 HOH A 27 63 63 HOH HOH . H 4 HOH A 28 64 64 HOH HOH . H 4 HOH A 29 66 66 HOH HOH . H 4 HOH A 30 72 72 HOH HOH . H 4 HOH A 31 74 74 HOH HOH . H 4 HOH A 32 75 75 HOH HOH . H 4 HOH A 33 76 76 HOH HOH . H 4 HOH A 34 77 77 HOH HOH . H 4 HOH A 35 82 82 HOH HOH . H 4 HOH A 36 84 84 HOH HOH . H 4 HOH A 37 85 85 HOH HOH . H 4 HOH A 38 86 86 HOH HOH . H 4 HOH A 39 87 87 HOH HOH . H 4 HOH A 40 90 90 HOH HOH . H 4 HOH A 41 92 92 HOH HOH . H 4 HOH A 42 93 93 HOH HOH . H 4 HOH A 43 94 94 HOH HOH . H 4 HOH A 44 95 95 HOH HOH . H 4 HOH A 45 97 97 HOH HOH . H 4 HOH A 46 98 98 HOH HOH . H 4 HOH A 47 100 100 HOH HOH . H 4 HOH A 48 101 101 HOH HOH . H 4 HOH A 49 106 106 HOH HOH . H 4 HOH A 50 108 108 HOH HOH . H 4 HOH A 51 111 111 HOH HOH . H 4 HOH A 52 112 112 HOH HOH . H 4 HOH A 53 113 113 HOH HOH . H 4 HOH A 54 114 114 HOH HOH . H 4 HOH A 55 116 116 HOH HOH . H 4 HOH A 56 118 118 HOH HOH . H 4 HOH A 57 119 119 HOH HOH . H 4 HOH A 58 122 122 HOH HOH . H 4 HOH A 59 124 124 HOH HOH . H 4 HOH A 60 125 125 HOH HOH . H 4 HOH A 61 126 126 HOH HOH . I 4 HOH B 1 17 16 HOH HOH . I 4 HOH B 2 18 21 HOH HOH . I 4 HOH B 3 19 22 HOH HOH . I 4 HOH B 4 20 23 HOH HOH . I 4 HOH B 5 21 25 HOH HOH . I 4 HOH B 6 22 28 HOH HOH . I 4 HOH B 7 23 30 HOH HOH . I 4 HOH B 8 24 35 HOH HOH . I 4 HOH B 9 25 36 HOH HOH . I 4 HOH B 10 26 40 HOH HOH . I 4 HOH B 11 27 41 HOH HOH . I 4 HOH B 12 28 42 HOH HOH . I 4 HOH B 13 29 43 HOH HOH . I 4 HOH B 14 30 44 HOH HOH . I 4 HOH B 15 31 46 HOH HOH . I 4 HOH B 16 32 52 HOH HOH . I 4 HOH B 17 33 55 HOH HOH . I 4 HOH B 18 34 56 HOH HOH . I 4 HOH B 19 35 57 HOH HOH . I 4 HOH B 20 36 60 HOH HOH . I 4 HOH B 21 37 61 HOH HOH . I 4 HOH B 22 38 65 HOH HOH . I 4 HOH B 23 39 67 HOH HOH . I 4 HOH B 24 40 68 HOH HOH . I 4 HOH B 25 41 69 HOH HOH . I 4 HOH B 26 42 70 HOH HOH . I 4 HOH B 27 43 71 HOH HOH . I 4 HOH B 28 44 73 HOH HOH . I 4 HOH B 29 45 78 HOH HOH . I 4 HOH B 30 46 79 HOH HOH . I 4 HOH B 31 47 80 HOH HOH . I 4 HOH B 32 48 81 HOH HOH . I 4 HOH B 33 49 83 HOH HOH . I 4 HOH B 34 50 88 HOH HOH . I 4 HOH B 35 51 89 HOH HOH . I 4 HOH B 36 52 91 HOH HOH . I 4 HOH B 37 53 96 HOH HOH . I 4 HOH B 38 54 99 HOH HOH . I 4 HOH B 39 55 102 HOH HOH . I 4 HOH B 40 56 103 HOH HOH . I 4 HOH B 41 57 104 HOH HOH . I 4 HOH B 42 58 105 HOH HOH . I 4 HOH B 43 59 107 HOH HOH . I 4 HOH B 44 60 109 HOH HOH . I 4 HOH B 45 61 110 HOH HOH . I 4 HOH B 46 62 115 HOH HOH . I 4 HOH B 47 63 117 HOH HOH . I 4 HOH B 48 64 120 HOH HOH . I 4 HOH B 49 65 121 HOH HOH . I 4 HOH B 50 66 123 HOH HOH . I 4 HOH B 51 67 127 HOH HOH . I 4 HOH B 52 68 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DA5 . . . E 2 12.638 -8.068 20.091 1 19.23 ? C1 DA5 13 B 1 HETATM 2 C C2 DA5 . . . E 2 12.56 -8 21.536 1 17.65 ? C2 DA5 13 B 1 HETATM 3 C C3 DA5 . . . E 2 11.537 -7.429 22.156 1 19.61 ? C3 DA5 13 B 1 HETATM 4 C C4 DA5 . . . E 2 10.45 -6.868 21.468 1 15.87 ? C4 DA5 13 B 1 HETATM 5 C C5 DA5 . . . E 2 8.385 -5.893 17.313 1 16.25 ? C5 DA5 13 B 1 HETATM 6 C C6 DA5 . . . E 2 8.237 -5.854 15.939 1 16.57 ? C6 DA5 13 B 1 HETATM 7 C C7 DA5 . . . E 2 9.301 -6.438 15.163 1 15.43 ? C7 DA5 13 B 1 HETATM 8 C C8 DA5 . . . E 2 10.383 -6.994 15.827 1 14.44 ? C8 DA5 13 B 1 HETATM 9 C C9 DA5 . . . E 2 11.517 -7.535 18 1 13.53 ? C9 DA5 13 B 1 HETATM 10 N N9 DA5 . . . E 2 12.526 -8.091 17.28 1 14.92 ? N9 DA5 13 B 1 HETATM 11 N N10 DA5 . . . E 2 9.477 -6.403 19.356 1 15.65 ? N10 DA5 13 B 1 HETATM 12 C C11 DA5 . . . E 2 11.611 -7.551 19.339 1 14.71 ? C11 DA5 13 B 1 HETATM 13 C C12 DA5 . . . E 2 10.486 -6.925 20.035 1 16.91 ? C12 DA5 13 B 1 HETATM 14 C C13 DA5 . . . E 2 10.507 -7.013 17.221 1 13.68 ? C13 DA5 13 B 1 HETATM 15 C C14 DA5 . . . E 2 9.464 -6.443 17.963 1 14.28 ? C14 DA5 13 B 1 HETATM 16 BR BR DA5 . . . E 2 6.963 -5.131 18.496 1 32.6 ? BR DA5 13 B 1 HETATM 17 C CD1 DA5 . . . E 2 9.353 -6.245 22.347 1 18.62 ? CD1 DA5 13 B 1 HETATM 18 O OD1 DA5 . . . E 2 8.749 -5.472 22.289 1 20.6 ? OD1 DA5 13 B 1 HETATM 19 N ND1 DA5 . . . E 2 10.311 -5.945 23.532 1 25.15 ? ND1 DA5 13 B 1 HETATM 20 C CD2 DA5 . . . E 2 9.467 -4.802 24.325 1 32.27 ? CD2 DA5 13 B 1 HETATM 21 C CD3 DA5 . . . E 2 9.968 -3.347 24.012 1 31.38 ? CD3 DA5 13 B 1 HETATM 22 N ND2 DA5 . . . E 2 11.244 -3.071 24.48 1 33.23 ? ND2 DA5 13 B 1 HETATM 23 C CD7 DA5 . . . E 2 11.617 -1.759 24.06 1 33.1 ? CD7 DA5 13 B 1 HETATM 24 C CD8 DA5 . . . E 2 11.489 -3.411 25.893 1 38.73 ? CD8 DA5 13 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #