data_375D # _model_server_result.job_id RtldlkcqylHVdQALtdBlTg _model_server_result.datetime_utc '2025-01-11 09:49:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 375d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":42}' # _entry.id 375D # _exptl.entry_id 375D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.3 _cell.angle_beta 84.5 _cell.angle_gamma 68.58 _cell.entry_id 375D _cell.length_a 32.56 _cell.length_b 32.59 _cell.length_c 37.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 375D _symmetry.cell_setting triclinic _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 75 n n C1 N2 NT sing 76 n n C1 N3 NT sing 77 n n N1 HN1 NT sing 78 n n N2 HN21 NT sing 79 n n N2 HN22 NT sing 80 n n N3 C2 NT sing 81 n n N3 HN3 NT sing 82 n n C2 C3 NT sing 83 n n C2 H21 NT sing 84 n n C2 H22 NT sing 85 n n C3 O1 NT doub 86 n n C3 N4 NT sing 87 n n N4 C4 NT sing 88 n n N4 HN4 NT sing 89 n n C4 C5 NT sing 90 n y C4 C7 NT doub 91 n y C5 C6 NT doub 92 n y C5 H5 NT sing 93 n n C6 N5 NT sing 94 n y C6 C9 NT sing 95 n n N5 C8 NT sing 96 n n N5 C7 NT sing 97 n y C8 H81 NT sing 98 n n C8 H82 NT sing 99 n n C8 H83 NT sing 100 n n C7 H7 NT sing 101 n n C9 O2 NT doub 102 n n C9 N6 NT sing 103 n n N6 C10 NT sing 104 n n N6 HN6 NT sing 105 n n C10 C11 NT sing 106 n y C10 C13 NT doub 107 n y C11 C12 NT doub 108 n y C11 H11 NT sing 109 n n C12 N7 NT sing 110 n y C12 C15 NT sing 111 n n N7 C14 NT sing 112 n n N7 C13 NT sing 113 n y C14 H141 NT sing 114 n n C14 H142 NT sing 115 n n C14 H143 NT sing 116 n n C13 H13 NT sing 117 n n C15 O3 NT doub 118 n n C15 N8 NT sing 119 n n N8 C16 NT sing 120 n n N8 HN8 NT sing 121 n n C16 C17 NT sing 122 n n C16 H161 NT sing 123 n n C16 H162 NT sing 124 n n C17 C18 NT sing 125 n n C17 H171 NT sing 126 n n C17 H172 NT sing 127 n n C18 N9 NT doub 128 n n C18 N10 NT sing 129 n n N9 HN9 NT sing 130 n n N10 HN01 NT sing 131 n n N10 HN02 NT sing 132 n n # _atom_sites.entry_id 375D _atom_sites.fract_transf_matrix[1][1] 0.030713 _atom_sites.fract_transf_matrix[1][2] -0.012048 _atom_sites.fract_transf_matrix[1][3] -0.002575 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032961 _atom_sites.fract_transf_matrix[2][3] -0.001051 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NT A 1 41 41 NT NT . F 2 NT A 1 42 42 NT NT . G 2 NT C 1 43 43 NT NT . H 2 NT C 1 44 44 NT NT . I 3 HOH A 1 49 49 HOH HOH . I 3 HOH A 2 52 52 HOH HOH . I 3 HOH A 3 55 55 HOH HOH . I 3 HOH A 4 65 65 HOH HOH . I 3 HOH A 5 66 66 HOH HOH . I 3 HOH A 6 67 67 HOH HOH . I 3 HOH A 7 69 69 HOH HOH . I 3 HOH A 8 70 70 HOH HOH . I 3 HOH A 9 72 72 HOH HOH . I 3 HOH A 10 73 73 HOH HOH . I 3 HOH A 11 75 75 HOH HOH . I 3 HOH A 12 79 79 HOH HOH . I 3 HOH A 13 81 81 HOH HOH . I 3 HOH A 14 83 83 HOH HOH . I 3 HOH A 15 84 84 HOH HOH . I 3 HOH A 16 85 85 HOH HOH . I 3 HOH A 17 86 86 HOH HOH . I 3 HOH A 18 89 89 HOH HOH . J 3 HOH B 1 46 46 HOH HOH . J 3 HOH B 2 47 47 HOH HOH . J 3 HOH B 3 50 50 HOH HOH . J 3 HOH B 4 53 53 HOH HOH . J 3 HOH B 5 54 54 HOH HOH . J 3 HOH B 6 57 57 HOH HOH . J 3 HOH B 7 58 58 HOH HOH . J 3 HOH B 8 59 59 HOH HOH . J 3 HOH B 9 68 68 HOH HOH . J 3 HOH B 10 80 80 HOH HOH . J 3 HOH B 11 87 87 HOH HOH . J 3 HOH B 12 91 91 HOH HOH . J 3 HOH B 13 92 92 HOH HOH . K 3 HOH C 1 45 45 HOH HOH . K 3 HOH C 2 48 48 HOH HOH . K 3 HOH C 3 51 51 HOH HOH . K 3 HOH C 4 56 56 HOH HOH . K 3 HOH C 5 61 61 HOH HOH . K 3 HOH C 6 62 62 HOH HOH . K 3 HOH C 7 63 63 HOH HOH . K 3 HOH C 8 64 64 HOH HOH . K 3 HOH C 9 71 71 HOH HOH . K 3 HOH C 10 74 74 HOH HOH . K 3 HOH C 11 76 76 HOH HOH . K 3 HOH C 12 77 77 HOH HOH . K 3 HOH C 13 82 82 HOH HOH . K 3 HOH C 14 88 88 HOH HOH . K 3 HOH C 15 93 93 HOH HOH . L 3 HOH D 1 60 60 HOH HOH . L 3 HOH D 2 78 78 HOH HOH . L 3 HOH D 3 90 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . F 2 12.088 5.611 -3.978 1 67.54 ? C1 NT 42 A 1 HETATM 2 N N1 NT . . . F 2 11.343 6.488 -4.664 1 69.02 ? N1 NT 42 A 1 HETATM 3 N N2 NT . . . F 2 12.171 4.295 -4.256 1 65.95 ? N2 NT 42 A 1 HETATM 4 N N3 NT . . . F 2 12.739 6.107 -2.941 1 65.35 ? N3 NT 42 A 1 HETATM 5 C C2 NT . . . F 2 12.71 5.174 -1.855 1 64.11 ? C2 NT 42 A 1 HETATM 6 C C3 NT . . . F 2 13.551 5.979 -0.89 1 60.85 ? C3 NT 42 A 1 HETATM 7 O O1 NT . . . F 2 13.375 7.196 -0.764 1 60.83 ? O1 NT 42 A 1 HETATM 8 N N4 NT . . . F 2 14.501 5.24 -0.297 1 57.05 ? N4 NT 42 A 1 HETATM 9 C C4 NT . . . F 2 15.298 5.818 0.675 1 53.42 ? C4 NT 42 A 1 HETATM 10 C C5 NT . . . F 2 16.072 5.132 1.57 1 50.98 ? C5 NT 42 A 1 HETATM 11 C C6 NT . . . F 2 16.619 6.027 2.432 1 50.13 ? C6 NT 42 A 1 HETATM 12 N N5 NT . . . F 2 16.203 7.268 2.073 1 50.73 ? N5 NT 42 A 1 HETATM 13 C C8 NT . . . F 2 16.419 8.677 2.597 1 51.29 ? C8 NT 42 A 1 HETATM 14 C C7 NT . . . F 2 15.409 7.191 1.016 1 52.02 ? C7 NT 42 A 1 HETATM 15 C C9 NT . . . F 2 17.465 5.639 3.546 1 50.52 ? C9 NT 42 A 1 HETATM 16 O O2 NT . . . F 2 17.628 6.397 4.501 1 53.05 ? O2 NT 42 A 1 HETATM 17 N N6 NT . . . F 2 18.037 4.416 3.466 1 46.67 ? N6 NT 42 A 1 HETATM 18 C C10 NT . . . F 2 18.822 3.892 4.497 1 41.7 ? C10 NT 42 A 1 HETATM 19 C C11 NT . . . F 2 19.683 2.809 4.44 1 40.64 ? C11 NT 42 A 1 HETATM 20 C C12 NT . . . F 2 20.181 2.458 5.679 1 37.91 ? C12 NT 42 A 1 HETATM 21 N N7 NT . . . F 2 19.607 3.378 6.499 1 37.23 ? N7 NT 42 A 1 HETATM 22 C C14 NT . . . F 2 19.725 3.533 7.992 1 34.84 ? C14 NT 42 A 1 HETATM 23 C C13 NT . . . F 2 18.804 4.238 5.865 1 39.04 ? C13 NT 42 A 1 HETATM 24 C C15 NT . . . F 2 21.055 1.323 6.042 1 38 ? C15 NT 42 A 1 HETATM 25 O O3 NT . . . F 2 21.404 0.991 7.169 1 38.94 ? O3 NT 42 A 1 HETATM 26 N N8 NT . . . F 2 21.52 0.608 5.011 1 36.57 ? N8 NT 42 A 1 HETATM 27 C C16 NT . . . F 2 22.479 -0.481 5.217 1 33.46 ? C16 NT 42 A 1 HETATM 28 C C17 NT . . . F 2 22.628 -1.783 5.985 1 30.26 ? C17 NT 42 A 1 HETATM 29 C C18 NT . . . F 2 23.837 -2.681 5.649 1 32.16 ? C18 NT 42 A 1 HETATM 30 N N9 NT . . . F 2 24.498 -3.275 6.656 1 29.93 ? N9 NT 42 A 1 HETATM 31 N N10 NT . . . F 2 24.242 -2.921 4.401 1 28.64 ? N10 NT 42 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #