data_376D # _model_server_result.job_id 8JmKV3w_3fPPGw5GglS4pA _model_server_result.datetime_utc '2024-10-19 16:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 376d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":10}' # _entry.id 376D # _exptl.entry_id 376D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 376D _cell.length_a 37.56 _cell.length_b 37.56 _cell.length_c 65.39 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 376D _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 18.78 32.527914 32.695 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DG 1 A DG 1 1_555 A P CBR 2 A CBR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? covale ? covale2 A O3' CBR 2 A CBR 2 1_555 A P DG 3 A DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 A N3 DC 8 A DC 8 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 A O2 DC 8 A DC 8 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 A N4 DC 8 A DC 8 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 CBR 2 A CBR 2 1_555 A N1 DG 7 A DG 7 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 CBR 2 A CBR 2 1_555 A O6 DG 7 A DG 7 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 CBR 2 A CBR 2 1_555 A N2 DG 7 A DG 7 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog7 A N2 DG 3 A DG 3 1_555 A N7 DA 6 A DA 6 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog8 A N3 DG 3 A DG 3 1_555 A N6 DA 6 A DA 6 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog9 A N6 DA 6 A DA 6 1_555 A N3 DG 3 A DG 3 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_11_PAIR hydrog10 A N7 DA 6 A DA 6 1_555 A N2 DG 3 A DG 3 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 7 A DG 7 1_555 A N3 CBR 2 A CBR 2 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 7 A DG 7 1_555 A O2 CBR 2 A CBR 2 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 7 A DG 7 1_555 A N4 CBR 2 A CBR 2 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 8 A DC 8 1_555 A N1 DG 1 A DG 1 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 8 A DC 8 1_555 A O6 DG 1 A DG 1 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 8 A DC 8 1_555 A N2 DG 1 A DG 1 8_665 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 187 n n CO N2 NCO sing 188 n n CO N3 NCO sing 189 n n CO N4 NCO sing 190 n n CO N5 NCO sing 191 n n CO N6 NCO sing 192 n n N1 HN11 NCO sing 193 n n N1 HN12 NCO sing 194 n n N1 HN13 NCO sing 195 n n N2 HN21 NCO sing 196 n n N2 HN22 NCO sing 197 n n N2 HN23 NCO sing 198 n n N3 HN31 NCO sing 199 n n N3 HN32 NCO sing 200 n n N3 HN33 NCO sing 201 n n N4 HN41 NCO sing 202 n n N4 HN42 NCO sing 203 n n N4 HN43 NCO sing 204 n n N5 HN51 NCO sing 205 n n N5 HN52 NCO sing 206 n n N5 HN53 NCO sing 207 n n N6 HN61 NCO sing 208 n n N6 HN62 NCO sing 209 n n N6 HN63 NCO sing 210 n n # _atom_sites.entry_id 376D _atom_sites.fract_transf_matrix[1][1] 0.026624 _atom_sites.fract_transf_matrix[1][2] 0.01537 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO A 1 10 10 NCO NCO . C 3 HOH A 1 11 11 HOH HOH . C 3 HOH A 2 12 12 HOH HOH . C 3 HOH A 3 13 13 HOH HOH . C 3 HOH A 4 14 14 HOH HOH . C 3 HOH A 5 15 15 HOH HOH . C 3 HOH A 6 16 16 HOH HOH . C 3 HOH A 7 17 17 HOH HOH . C 3 HOH A 8 18 18 HOH HOH . C 3 HOH A 9 19 19 HOH HOH . C 3 HOH A 10 20 20 HOH HOH . C 3 HOH A 11 21 21 HOH HOH . C 3 HOH A 12 22 22 HOH HOH . C 3 HOH A 13 23 23 HOH HOH . C 3 HOH A 14 24 24 HOH HOH . C 3 HOH A 15 25 25 HOH HOH . C 3 HOH A 16 26 26 HOH HOH . C 3 HOH A 17 27 27 HOH HOH . C 3 HOH A 18 28 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . B 2 18.78 10.843 25.743 0.33 13.07 ? CO NCO 10 A 1 HETATM 2 N N1 NCO . . . B 2 17.791 9.579 24.611 1 11.41 ? N1 NCO 10 A 1 HETATM 3 N N2 NCO . . . B 2 19.394 9.354 26.846 1 12.18 ? N2 NCO 10 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #