data_386D # _model_server_result.job_id 9udNBs_pxaqWQWHWmkQG0w _model_server_result.datetime_utc '2024-10-18 13:18:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 386d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":7}' # _entry.id 386D # _exptl.entry_id 386D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.495 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-BIS(3-AMINOPROPYL)-2-ANTHRAQUINONESULFONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 386D _cell.length_a 31.02 _cell.length_b 31.02 _cell.length_c 64.91 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 386D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 31.02 0 32.455 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 A N1 DG 6 A DG 6 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 A O6 DG 6 A DG 6 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 A N2 DG 6 A DG 6 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 A N3 DC 5 A DC 5 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 A O2 DC 5 A DC 5 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 A N4 DC 5 A DC 5 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 A N1 DA 4 A DA 4 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 A N6 DA 4 A DA 4 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 A N3 DT 3 A DT 3 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 A O4 DT 3 A DT 3 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 5 A DC 5 1_555 A N1 DG 2 A DG 2 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 5 A DC 5 1_555 A O6 DG 2 A DG 2 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 5 A DC 5 1_555 A N2 DG 2 A DG 2 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 A N3 DC 1 A DC 1 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 A O2 DC 1 A DC 1 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 A N4 DC 1 A DC 1 11_655 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H25 N3 O4 S 2' _chem_comp.formula_weight 403.495 _chem_comp.id AQS _chem_comp.mon_nstd_flag . _chem_comp.name N,N-BIS(3-AMINOPROPYL)-2-ANTHRAQUINONESULFONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AQS doub 1 n y C1 C20 AQS sing 2 n y C1 H1 AQS sing 3 n n C2 C3 AQS sing 4 n y C2 H2 AQS sing 5 n n C3 C4 AQS doub 6 n y C3 S1 AQS sing 7 n n C4 C5 AQS sing 8 n y C4 H4 AQS sing 9 n n C5 C6 AQS sing 10 n n C5 C20 AQS doub 11 n y C6 O6 AQS doub 12 n n C6 C7 AQS sing 13 n n C7 C8 AQS doub 14 n y C7 C18 AQS sing 15 n y C8 C9 AQS sing 16 n y C8 H8 AQS sing 17 n n C9 C16 AQS doub 18 n y C9 H9 AQS sing 19 n n C16 C17 AQS sing 20 n y C16 H16 AQS sing 21 n n C17 C18 AQS doub 22 n y C17 H17 AQS sing 23 n n C18 C19 AQS sing 24 n n C19 O19 AQS doub 25 n n C19 C20 AQS sing 26 n n S1 O1S AQS doub 27 n n S1 O2S AQS doub 28 n n S1 N1 AQS sing 29 n n N1 C1A AQS sing 30 n n N1 C1B AQS sing 31 n n C1A C2A AQS sing 32 n n C1A HA11 AQS sing 33 n n C1A HA12 AQS sing 34 n n C2A C3A AQS sing 35 n n C2A HA21 AQS sing 36 n n C2A HA22 AQS sing 37 n n C3A N3A AQS sing 38 n n C3A HA31 AQS sing 39 n n C3A HA32 AQS sing 40 n n N3A HNA1 AQS sing 41 n n N3A HNA2 AQS sing 42 n n N3A HNA3 AQS sing 43 n n C1B C2B AQS sing 44 n n C1B HB11 AQS sing 45 n n C1B HB12 AQS sing 46 n n C2B C3B AQS sing 47 n n C2B HB21 AQS sing 48 n n C2B HB22 AQS sing 49 n n C3B N3B AQS sing 50 n n C3B HB31 AQS sing 51 n n C3B HB32 AQS sing 52 n n N3B HNB1 AQS sing 53 n n N3B HNB2 AQS sing 54 n n N3B HNB3 AQS sing 55 n n # _atom_sites.entry_id 386D _atom_sites.fract_transf_matrix[1][1] 0.032237 _atom_sites.fract_transf_matrix[1][2] 0.018612 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQS A 1 7 7 AQS AQS . C 3 HOH A 1 21 21 HOH HOH . C 3 HOH A 2 22 22 HOH HOH . C 3 HOH A 3 23 23 HOH HOH . C 3 HOH A 4 24 24 HOH HOH . C 3 HOH A 5 25 25 HOH HOH . C 3 HOH A 6 26 26 HOH HOH . C 3 HOH A 7 27 27 HOH HOH . C 3 HOH A 8 28 28 HOH HOH . C 3 HOH A 9 29 29 HOH HOH . C 3 HOH A 10 30 30 HOH HOH . C 3 HOH A 11 31 31 HOH HOH . C 3 HOH A 12 32 32 HOH HOH . C 3 HOH A 13 33 33 HOH HOH . C 3 HOH A 14 34 34 HOH HOH . C 3 HOH A 15 35 35 HOH HOH . C 3 HOH A 16 36 36 HOH HOH . C 3 HOH A 17 37 37 HOH HOH . C 3 HOH A 18 38 38 HOH HOH . C 3 HOH A 19 39 39 HOH HOH . C 3 HOH A 20 40 40 HOH HOH . C 3 HOH A 21 41 41 HOH HOH . C 3 HOH A 22 42 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AQS . . . B 2 9.719 8.942 22.465 1 13.67 ? C1 AQS 7 A 1 HETATM 2 C C2 AQS . . . B 2 10.22 7.693 22.858 1 16.06 ? C2 AQS 7 A 1 HETATM 3 C C3 AQS . . . B 2 11.355 7.634 23.675 1 17.39 ? C3 AQS 7 A 1 HETATM 4 C C4 AQS . . . B 2 12.015 8.806 24.087 1 13.12 ? C4 AQS 7 A 1 HETATM 5 C C5 AQS . . . B 2 11.53 10.057 23.675 1 14.5 ? C5 AQS 7 A 1 HETATM 6 C C6 AQS . . . B 2 12.219 11.319 24.116 1 14.61 ? C6 AQS 7 A 1 HETATM 7 O O6 AQS . . . B 2 13.206 11.264 24.826 1 17.92 ? O6 AQS 7 A 1 HETATM 8 C C7 AQS . . . B 2 11.662 12.657 23.671 1 15.41 ? C7 AQS 7 A 1 HETATM 9 C C8 AQS . . . B 2 12.29 13.849 24.083 1 15.49 ? C8 AQS 7 A 1 HETATM 10 C C9 AQS . . . B 2 11.779 15.085 23.646 1 15.94 ? C9 AQS 7 A 1 HETATM 11 C C16 AQS . . . B 2 10.649 15.148 22.81 1 14.63 ? C16 AQS 7 A 1 HETATM 12 C C17 AQS . . . B 2 10.002 13.963 22.422 1 16.51 ? C17 AQS 7 A 1 HETATM 13 C C18 AQS . . . B 2 10.506 12.717 22.85 1 15.6 ? C18 AQS 7 A 1 HETATM 14 C C19 AQS . . . B 2 9.806 11.448 22.429 1 16.51 ? C19 AQS 7 A 1 HETATM 15 O O19 AQS . . . B 2 8.816 11.479 21.72 1 15.69 ? O19 AQS 7 A 1 HETATM 16 C C20 AQS . . . B 2 10.374 10.121 22.863 1 15.37 ? C20 AQS 7 A 1 HETATM 17 S S1 AQS . . . B 2 11.959 6.054 24.175 1 20.48 ? S1 AQS 7 A 1 HETATM 18 O O1S AQS . . . B 2 12.567 6.182 25.473 1 18.76 ? O1S AQS 7 A 1 HETATM 19 O O2S AQS . . . B 2 10.888 5.091 24.169 1 15.16 ? O2S AQS 7 A 1 HETATM 20 N N1 AQS . . . B 2 13.19 5.602 23.005 1 22.91 ? N1 AQS 7 A 1 HETATM 21 C C1A AQS . . . B 2 12.886 4.698 21.885 1 27.18 ? C1A AQS 7 A 1 HETATM 22 C C2A AQS . . . B 2 12.995 3.182 22.111 1 32.13 ? C2A AQS 7 A 1 HETATM 23 C C3A AQS . . . B 2 11.918 2.223 21.589 1 36.72 ? C3A AQS 7 A 1 HETATM 24 N N3A AQS . . . B 2 12.256 1.247 20.541 1 40.19 ? N3A AQS 7 A 1 HETATM 25 C C1B AQS . . . B 2 14.462 6.333 22.815 1 20.26 ? C1B AQS 7 A 1 HETATM 26 C C2B AQS . . . B 2 15.789 5.79 23.395 1 19.86 ? C2B AQS 7 A 1 HETATM 27 C C3B AQS . . . B 2 15.776 4.696 24.5 1 20.09 ? C3B AQS 7 A 1 HETATM 28 N N3B AQS . . . B 2 17.002 4.021 24.966 1 14.84 ? N3B AQS 7 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #