data_3A06
#
_model_server_result.job_id            -tGE1pyp7pWUk34LMzmw9w 
_model_server_result.datetime_utc      '2024-11-05 00:37:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3003}' 
#
_entry.id    3A06 
#
_exptl.entry_id    3A06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     1.1.1.267 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3A06 
_cell.length_a            108.622 
_cell.length_b            108.622 
_cell.length_c            74.662 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 142 A ASP 142 1_555 F MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc2 A OE1 GLU 144 A GLU 144 1_555 F MG MG . A MG 500 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc3 A OE2 GLU 209 A GLU 209 1_555 F MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc4 F MG MG . A MG 500 1_555 J O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc5 F MG MG . A MG 500 1_555 J O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc6 F MG MG . A MG 500 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc7 B OD1 ASP 142 B ASP 142 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc8 B OE1 GLU 144 B GLU 144 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc9 B OE2 GLU 209 B GLU 209 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc10 K O HOH . B HOH 380 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 257 n n 
PA O2A NDP sing 258 n n 
PA O5B NDP sing 259 n n 
PA O3 NDP sing 260 n n 
O2A HOA2 NDP sing 261 n n 
O5B C5B NDP sing 262 n n 
C5B C4B NDP sing 263 n n 
C5B H51A NDP sing 264 n n 
C5B H52A NDP sing 265 n n 
C4B O4B NDP sing 266 n n 
C4B C3B NDP sing 267 n n 
C4B H4B NDP sing 268 n n 
O4B C1B NDP sing 269 n n 
C3B O3B NDP sing 270 n n 
C3B C2B NDP sing 271 n n 
C3B H3B NDP sing 272 n n 
O3B HO3A NDP sing 273 n n 
C2B O2B NDP sing 274 n n 
C2B C1B NDP sing 275 n n 
C2B H2B NDP sing 276 n n 
O2B P2B NDP sing 277 n n 
C1B N9A NDP sing 278 n n 
C1B H1B NDP sing 279 n n 
N9A C8A NDP sing 280 n y 
N9A C4A NDP sing 281 n y 
C8A N7A NDP doub 282 n y 
C8A H8A NDP sing 283 n n 
N7A C5A NDP sing 284 n y 
C5A C6A NDP sing 285 n y 
C5A C4A NDP doub 286 n y 
C6A N6A NDP sing 287 n n 
C6A N1A NDP doub 288 n y 
N6A H61A NDP sing 289 n n 
N6A H62A NDP sing 290 n n 
N1A C2A NDP sing 291 n y 
C2A N3A NDP doub 292 n y 
C2A H2A NDP sing 293 n n 
N3A C4A NDP sing 294 n y 
O3 PN NDP sing 295 n n 
PN O1N NDP doub 296 n n 
PN O2N NDP sing 297 n n 
PN O5D NDP sing 298 n n 
O2N H21N NDP sing 299 n n 
O5D C5D NDP sing 300 n n 
C5D C4D NDP sing 301 n n 
C5D H51N NDP sing 302 n n 
C5D H52N NDP sing 303 n n 
C4D O4D NDP sing 304 n n 
C4D C3D NDP sing 305 n n 
C4D H4D NDP sing 306 n n 
O4D C1D NDP sing 307 n n 
C3D O3D NDP sing 308 n n 
C3D C2D NDP sing 309 n n 
C3D H3D NDP sing 310 n n 
O3D HO3N NDP sing 311 n n 
C2D O2D NDP sing 312 n n 
C2D C1D NDP sing 313 n n 
C2D H2D NDP sing 314 n n 
O2D HO2N NDP sing 315 n n 
C1D N1N NDP sing 316 n n 
C1D H1D NDP sing 317 n n 
N1N C2N NDP sing 318 n n 
N1N C6N NDP sing 319 n n 
C2N C3N NDP doub 320 n n 
C2N H2N NDP sing 321 n n 
C3N C7N NDP sing 322 n n 
C3N C4N NDP sing 323 n n 
C7N O7N NDP doub 324 n n 
C7N N7N NDP sing 325 n n 
N7N H71N NDP sing 326 n n 
N7N H72N NDP sing 327 n n 
C4N C5N NDP sing 328 n n 
C4N H41N NDP sing 329 n n 
C4N H42N NDP sing 330 n n 
C5N C6N NDP doub 331 n n 
C5N H5N NDP sing 332 n n 
C6N H6N NDP sing 333 n n 
P2B O1X NDP doub 334 n n 
P2B O2X NDP sing 335 n n 
P2B O3X NDP sing 336 n n 
O2X HOP2 NDP sing 337 n n 
O3X HOP3 NDP sing 338 n n 
#
_atom_sites.entry_id                     3A06 
_atom_sites.fract_transf_matrix[1][1]    0.009206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 3001 3001 NDP NDP . 
D 2 NDP A 1 3003 3003 NDP NDP . 
E 3 FOM A 1 900 900 FOM FOM . 
F 4 MG A 1 500 500 MG MG . 
G 2 NDP B 1 3002 3002 NDP NDP . 
H 3 FOM B 1 901 901 FOM FOM . 
I 4 MG B 1 501 501 MG MG . 
J 5 HOH A 1 377 377 HOH HOH . 
J 5 HOH A 2 378 378 HOH HOH . 
J 5 HOH A 3 379 379 HOH HOH . 
J 5 HOH A 4 380 380 HOH HOH . 
J 5 HOH A 5 381 381 HOH HOH . 
J 5 HOH A 6 382 382 HOH HOH . 
J 5 HOH A 7 383 383 HOH HOH . 
J 5 HOH A 8 384 384 HOH HOH . 
J 5 HOH A 9 385 385 HOH HOH . 
J 5 HOH A 10 386 386 HOH HOH . 
J 5 HOH A 11 387 400 HOH HOH . 
J 5 HOH A 12 388 388 HOH HOH . 
J 5 HOH A 13 389 389 HOH HOH . 
J 5 HOH A 14 390 390 HOH HOH . 
J 5 HOH A 15 391 391 HOH HOH . 
J 5 HOH A 16 392 392 HOH HOH . 
J 5 HOH A 17 393 393 HOH HOH . 
J 5 HOH A 18 394 394 HOH HOH . 
J 5 HOH A 19 395 395 HOH HOH . 
J 5 HOH A 20 396 396 HOH HOH . 
J 5 HOH A 21 397 397 HOH HOH . 
J 5 HOH A 22 398 398 HOH HOH . 
J 5 HOH A 23 399 399 HOH HOH . 
J 5 HOH A 24 400 400 HOH HOH . 
J 5 HOH A 25 401 401 HOH HOH . 
J 5 HOH A 26 402 402 HOH HOH . 
J 5 HOH A 27 403 403 HOH HOH . 
J 5 HOH A 28 404 404 HOH HOH . 
J 5 HOH A 29 405 405 HOH HOH . 
J 5 HOH A 30 406 406 HOH HOH . 
J 5 HOH A 31 407 407 HOH HOH . 
J 5 HOH A 32 408 408 HOH HOH . 
J 5 HOH A 33 409 409 HOH HOH . 
J 5 HOH A 34 410 410 HOH HOH . 
J 5 HOH A 35 411 411 HOH HOH . 
J 5 HOH A 36 412 412 HOH HOH . 
J 5 HOH A 37 413 413 HOH HOH . 
J 5 HOH A 38 414 414 HOH HOH . 
J 5 HOH A 39 415 415 HOH HOH . 
J 5 HOH A 40 416 416 HOH HOH . 
J 5 HOH A 41 418 418 HOH HOH . 
J 5 HOH A 42 419 419 HOH HOH . 
J 5 HOH A 43 420 420 HOH HOH . 
J 5 HOH A 44 421 421 HOH HOH . 
J 5 HOH A 45 422 422 HOH HOH . 
J 5 HOH A 46 423 423 HOH HOH . 
J 5 HOH A 47 424 424 HOH HOH . 
J 5 HOH A 48 425 425 HOH HOH . 
J 5 HOH A 49 426 426 HOH HOH . 
J 5 HOH A 50 430 430 HOH HOH . 
J 5 HOH A 51 431 431 HOH HOH . 
J 5 HOH A 52 432 432 HOH HOH . 
J 5 HOH A 53 435 435 HOH HOH . 
J 5 HOH A 54 439 439 HOH HOH . 
J 5 HOH A 55 441 441 HOH HOH . 
J 5 HOH A 56 442 442 HOH HOH . 
J 5 HOH A 57 601 601 HOH HOH . 
J 5 HOH A 58 602 602 HOH HOH . 
J 5 HOH A 59 603 603 HOH HOH . 
K 5 HOH B 1 377 377 HOH HOH . 
K 5 HOH B 2 378 378 HOH HOH . 
K 5 HOH B 3 379 379 HOH HOH . 
K 5 HOH B 4 380 380 HOH HOH . 
K 5 HOH B 5 381 381 HOH HOH . 
K 5 HOH B 6 382 382 HOH HOH . 
K 5 HOH B 7 383 383 HOH HOH . 
K 5 HOH B 8 384 384 HOH HOH . 
K 5 HOH B 9 385 385 HOH HOH . 
K 5 HOH B 10 386 386 HOH HOH . 
K 5 HOH B 11 387 387 HOH HOH . 
K 5 HOH B 12 388 388 HOH HOH . 
K 5 HOH B 13 389 389 HOH HOH . 
K 5 HOH B 14 390 390 HOH HOH . 
K 5 HOH B 15 391 391 HOH HOH . 
K 5 HOH B 16 392 392 HOH HOH . 
K 5 HOH B 17 393 393 HOH HOH . 
K 5 HOH B 18 394 394 HOH HOH . 
K 5 HOH B 19 395 395 HOH HOH . 
K 5 HOH B 20 396 396 HOH HOH . 
K 5 HOH B 21 397 397 HOH HOH . 
K 5 HOH B 22 398 398 HOH HOH . 
K 5 HOH B 23 401 401 HOH HOH . 
K 5 HOH B 24 402 402 HOH HOH . 
K 5 HOH B 25 404 404 HOH HOH . 
K 5 HOH B 26 405 405 HOH HOH . 
K 5 HOH B 27 406 406 HOH HOH . 
K 5 HOH B 28 407 407 HOH HOH . 
K 5 HOH B 29 408 408 HOH HOH . 
K 5 HOH B 30 409 409 HOH HOH . 
K 5 HOH B 31 410 410 HOH HOH . 
K 5 HOH B 32 411 411 HOH HOH . 
K 5 HOH B 33 412 412 HOH HOH . 
K 5 HOH B 34 413 413 HOH HOH . 
K 5 HOH B 35 414 414 HOH HOH . 
K 5 HOH B 36 415 415 HOH HOH . 
K 5 HOH B 37 416 416 HOH HOH . 
K 5 HOH B 38 417 417 HOH HOH . 
K 5 HOH B 39 418 418 HOH HOH . 
K 5 HOH B 40 419 419 HOH HOH . 
K 5 HOH B 41 420 420 HOH HOH . 
K 5 HOH B 42 421 421 HOH HOH . 
K 5 HOH B 43 422 422 HOH HOH . 
K 5 HOH B 44 423 423 HOH HOH . 
K 5 HOH B 45 424 424 HOH HOH . 
K 5 HOH B 46 425 425 HOH HOH . 
K 5 HOH B 47 426 426 HOH HOH . 
K 5 HOH B 48 427 427 HOH HOH . 
K 5 HOH B 49 428 428 HOH HOH . 
K 5 HOH B 50 434 434 HOH HOH . 
K 5 HOH B 51 436 436 HOH HOH . 
K 5 HOH B 52 437 437 HOH HOH . 
K 5 HOH B 53 438 438 HOH HOH . 
K 5 HOH B 54 440 440 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 2 27.707 28.075 34.778 1 78.72 ? PA NDP 3003 A 1 
HETATM 2 O O1A NDP . . . D 2 28.547 28.289 35.981 1 78.41 ? O1A NDP 3003 A 1 
HETATM 3 O O2A NDP . . . D 2 28.423 27.171 33.628 1 79.23 ? O2A NDP 3003 A 1 
HETATM 4 O O5B NDP . . . D 2 27.284 29.454 34.016 1 75.3 ? O5B NDP 3003 A 1 
HETATM 5 C C5B NDP . . . D 2 26.039 29.543 33.297 1 67.09 ? C5B NDP 3003 A 1 
HETATM 6 C C4B NDP . . . D 2 26.187 30.305 31.96 1 60.75 ? C4B NDP 3003 A 1 
HETATM 7 O O4B NDP . . . D 2 24.92 31.003 31.778 1 58.29 ? O4B NDP 3003 A 1 
HETATM 8 C C3B NDP . . . D 2 27.275 31.373 31.991 1 59.04 ? C3B NDP 3003 A 1 
HETATM 9 O O3B NDP . . . D 2 27.857 31.518 30.68 1 58 ? O3B NDP 3003 A 1 
HETATM 10 C C2B NDP . . . D 2 26.484 32.616 32.378 1 56.01 ? C2B NDP 3003 A 1 
HETATM 11 O O2B NDP . . . D 2 27.12 33.793 31.892 1 57.32 ? O2B NDP 3003 A 1 
HETATM 12 C C1B NDP . . . D 2 25.212 32.405 31.579 1 53.34 ? C1B NDP 3003 A 1 
HETATM 13 N N9A NDP . . . D 2 24.163 33.297 32.149 1 51.92 ? N9A NDP 3003 A 1 
HETATM 14 C C8A NDP . . . D 2 23.684 33.26 33.395 1 51.5 ? C8A NDP 3003 A 1 
HETATM 15 N N7A NDP . . . D 2 22.761 34.215 33.554 1 49.89 ? N7A NDP 3003 A 1 
HETATM 16 C C5A NDP . . . D 2 22.664 34.862 32.391 1 49.75 ? C5A NDP 3003 A 1 
HETATM 17 C C6A NDP . . . D 2 21.894 35.931 31.962 1 50.34 ? C6A NDP 3003 A 1 
HETATM 18 N N6A NDP . . . D 2 21.018 36.524 32.791 1 50.73 ? N6A NDP 3003 A 1 
HETATM 19 N N1A NDP . . . D 2 22.059 36.355 30.691 1 51.19 ? N1A NDP 3003 A 1 
HETATM 20 C C2A NDP . . . D 2 22.925 35.785 29.847 1 50.65 ? C2A NDP 3003 A 1 
HETATM 21 N N3A NDP . . . D 2 23.675 34.758 30.225 1 49.85 ? N3A NDP 3003 A 1 
HETATM 22 C C4A NDP . . . D 2 23.557 34.284 31.494 1 50.12 ? C4A NDP 3003 A 1 
HETATM 23 O O3 NDP . . . D 2 26.349 27.252 35.144 1 78.56 ? O3 NDP 3003 A 1 
HETATM 24 P P2B NDP . . . D 2 27.683 34.88 32.945 1 56.96 ? P2B NDP 3003 A 1 
HETATM 25 O O1X NDP . . . D 2 28.549 34.19 33.948 1 60.53 ? O1X NDP 3003 A 1 
HETATM 26 O O2X NDP . . . D 2 28.423 35.916 32.045 1 54.96 ? O2X NDP 3003 A 1 
HETATM 27 O O3X NDP . . . D 2 26.43 35.637 33.627 1 58.42 ? O3X NDP 3003 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#