data_3A06 # _model_server_result.job_id CB6cu6I8e2oW9yEaU2uGtQ _model_server_result.datetime_utc '2024-11-05 00:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 3A06 # _exptl.entry_id 3A06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A06 _cell.length_a 108.622 _cell.length_b 108.622 _cell.length_c 74.662 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 142 A ASP 142 1_555 F MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A OE1 GLU 144 A GLU 144 1_555 F MG MG . A MG 500 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc3 A OE2 GLU 209 A GLU 209 1_555 F MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 F MG MG . A MG 500 1_555 J O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc5 F MG MG . A MG 500 1_555 J O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc6 F MG MG . A MG 500 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 B OD1 ASP 142 B ASP 142 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc8 B OE1 GLU 144 B GLU 144 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 B OE2 GLU 209 B GLU 209 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc10 K O HOH . B HOH 380 1_555 I MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3A06 _atom_sites.fract_transf_matrix[1][1] 0.009206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 3001 3001 NDP NDP . D 2 NDP A 1 3003 3003 NDP NDP . E 3 FOM A 1 900 900 FOM FOM . F 4 MG A 1 500 500 MG MG . G 2 NDP B 1 3002 3002 NDP NDP . H 3 FOM B 1 901 901 FOM FOM . I 4 MG B 1 501 501 MG MG . J 5 HOH A 1 377 377 HOH HOH . J 5 HOH A 2 378 378 HOH HOH . J 5 HOH A 3 379 379 HOH HOH . J 5 HOH A 4 380 380 HOH HOH . J 5 HOH A 5 381 381 HOH HOH . J 5 HOH A 6 382 382 HOH HOH . J 5 HOH A 7 383 383 HOH HOH . J 5 HOH A 8 384 384 HOH HOH . J 5 HOH A 9 385 385 HOH HOH . J 5 HOH A 10 386 386 HOH HOH . J 5 HOH A 11 387 400 HOH HOH . J 5 HOH A 12 388 388 HOH HOH . J 5 HOH A 13 389 389 HOH HOH . J 5 HOH A 14 390 390 HOH HOH . J 5 HOH A 15 391 391 HOH HOH . J 5 HOH A 16 392 392 HOH HOH . J 5 HOH A 17 393 393 HOH HOH . J 5 HOH A 18 394 394 HOH HOH . J 5 HOH A 19 395 395 HOH HOH . J 5 HOH A 20 396 396 HOH HOH . J 5 HOH A 21 397 397 HOH HOH . J 5 HOH A 22 398 398 HOH HOH . J 5 HOH A 23 399 399 HOH HOH . J 5 HOH A 24 400 400 HOH HOH . J 5 HOH A 25 401 401 HOH HOH . J 5 HOH A 26 402 402 HOH HOH . J 5 HOH A 27 403 403 HOH HOH . J 5 HOH A 28 404 404 HOH HOH . J 5 HOH A 29 405 405 HOH HOH . J 5 HOH A 30 406 406 HOH HOH . J 5 HOH A 31 407 407 HOH HOH . J 5 HOH A 32 408 408 HOH HOH . J 5 HOH A 33 409 409 HOH HOH . J 5 HOH A 34 410 410 HOH HOH . J 5 HOH A 35 411 411 HOH HOH . J 5 HOH A 36 412 412 HOH HOH . J 5 HOH A 37 413 413 HOH HOH . J 5 HOH A 38 414 414 HOH HOH . J 5 HOH A 39 415 415 HOH HOH . J 5 HOH A 40 416 416 HOH HOH . J 5 HOH A 41 418 418 HOH HOH . J 5 HOH A 42 419 419 HOH HOH . J 5 HOH A 43 420 420 HOH HOH . J 5 HOH A 44 421 421 HOH HOH . J 5 HOH A 45 422 422 HOH HOH . J 5 HOH A 46 423 423 HOH HOH . J 5 HOH A 47 424 424 HOH HOH . J 5 HOH A 48 425 425 HOH HOH . J 5 HOH A 49 426 426 HOH HOH . J 5 HOH A 50 430 430 HOH HOH . J 5 HOH A 51 431 431 HOH HOH . J 5 HOH A 52 432 432 HOH HOH . J 5 HOH A 53 435 435 HOH HOH . J 5 HOH A 54 439 439 HOH HOH . J 5 HOH A 55 441 441 HOH HOH . J 5 HOH A 56 442 442 HOH HOH . J 5 HOH A 57 601 601 HOH HOH . J 5 HOH A 58 602 602 HOH HOH . J 5 HOH A 59 603 603 HOH HOH . K 5 HOH B 1 377 377 HOH HOH . K 5 HOH B 2 378 378 HOH HOH . K 5 HOH B 3 379 379 HOH HOH . K 5 HOH B 4 380 380 HOH HOH . K 5 HOH B 5 381 381 HOH HOH . K 5 HOH B 6 382 382 HOH HOH . K 5 HOH B 7 383 383 HOH HOH . K 5 HOH B 8 384 384 HOH HOH . K 5 HOH B 9 385 385 HOH HOH . K 5 HOH B 10 386 386 HOH HOH . K 5 HOH B 11 387 387 HOH HOH . K 5 HOH B 12 388 388 HOH HOH . K 5 HOH B 13 389 389 HOH HOH . K 5 HOH B 14 390 390 HOH HOH . K 5 HOH B 15 391 391 HOH HOH . K 5 HOH B 16 392 392 HOH HOH . K 5 HOH B 17 393 393 HOH HOH . K 5 HOH B 18 394 394 HOH HOH . K 5 HOH B 19 395 395 HOH HOH . K 5 HOH B 20 396 396 HOH HOH . K 5 HOH B 21 397 397 HOH HOH . K 5 HOH B 22 398 398 HOH HOH . K 5 HOH B 23 401 401 HOH HOH . K 5 HOH B 24 402 402 HOH HOH . K 5 HOH B 25 404 404 HOH HOH . K 5 HOH B 26 405 405 HOH HOH . K 5 HOH B 27 406 406 HOH HOH . K 5 HOH B 28 407 407 HOH HOH . K 5 HOH B 29 408 408 HOH HOH . K 5 HOH B 30 409 409 HOH HOH . K 5 HOH B 31 410 410 HOH HOH . K 5 HOH B 32 411 411 HOH HOH . K 5 HOH B 33 412 412 HOH HOH . K 5 HOH B 34 413 413 HOH HOH . K 5 HOH B 35 414 414 HOH HOH . K 5 HOH B 36 415 415 HOH HOH . K 5 HOH B 37 416 416 HOH HOH . K 5 HOH B 38 417 417 HOH HOH . K 5 HOH B 39 418 418 HOH HOH . K 5 HOH B 40 419 419 HOH HOH . K 5 HOH B 41 420 420 HOH HOH . K 5 HOH B 42 421 421 HOH HOH . K 5 HOH B 43 422 422 HOH HOH . K 5 HOH B 44 423 423 HOH HOH . K 5 HOH B 45 424 424 HOH HOH . K 5 HOH B 46 425 425 HOH HOH . K 5 HOH B 47 426 426 HOH HOH . K 5 HOH B 48 427 427 HOH HOH . K 5 HOH B 49 428 428 HOH HOH . K 5 HOH B 50 434 434 HOH HOH . K 5 HOH B 51 436 436 HOH HOH . K 5 HOH B 52 437 437 HOH HOH . K 5 HOH B 53 438 438 HOH HOH . K 5 HOH B 54 440 440 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 35.298 _atom_site.Cartn_y 26.159 _atom_site.Cartn_z -12.653 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 52.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #