data_3A0D # _model_server_result.job_id jO5YDBTVCDgKOVCVNs3drA _model_server_result.datetime_utc '2024-11-22 22:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":111}' # _entry.id 3A0D # _exptl.entry_id 3A0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A0D _cell.length_a 76.46 _cell.length_b 76.46 _cell.length_c 61.75 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 41.166667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 30 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 53 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 53 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.024 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 237 n n C1 O1 MMA sing 238 n n C1 O5 MMA sing 239 n n C1 H1 MMA sing 240 n n C2 C3 MMA sing 241 n n C2 O2 MMA sing 242 n n C2 H2 MMA sing 243 n n C3 C4 MMA sing 244 n n C3 O3 MMA sing 245 n n C3 H3 MMA sing 246 n n C4 C5 MMA sing 247 n n C4 O4 MMA sing 248 n n C4 H4 MMA sing 249 n n C5 C6 MMA sing 250 n n C5 O5 MMA sing 251 n n C5 H5 MMA sing 252 n n C6 O6 MMA sing 253 n n C6 H61 MMA sing 254 n n C6 H62 MMA sing 255 n n C7 O1 MMA sing 256 n n C7 H71 MMA sing 257 n n C7 H72 MMA sing 258 n n C7 H73 MMA sing 259 n n O2 HO2 MMA sing 260 n n O3 HO3 MMA sing 261 n n O4 HO4 MMA sing 262 n n O6 HO6 MMA sing 263 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 3A0D _atom_sites.fract_transf_matrix[1][1] 0.013079 _atom_sites.fract_transf_matrix[1][2] 0.007551 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMA A 1 111 1 MMA MMA . C 3 SO4 A 1 112 1 SO4 SO4 . D 3 SO4 A 1 113 2 SO4 SO4 . E 3 SO4 A 1 114 3 SO4 SO4 . F 3 SO4 A 1 115 4 SO4 SO4 . G 3 SO4 A 1 116 5 SO4 SO4 . H 4 HOH A 1 117 1 HOH HOH . H 4 HOH A 2 118 2 HOH HOH . H 4 HOH A 3 119 3 HOH HOH . H 4 HOH A 4 120 4 HOH HOH . H 4 HOH A 5 121 5 HOH HOH . H 4 HOH A 6 122 6 HOH HOH . H 4 HOH A 7 123 7 HOH HOH . H 4 HOH A 8 124 8 HOH HOH . H 4 HOH A 9 125 9 HOH HOH . H 4 HOH A 10 126 10 HOH HOH . H 4 HOH A 11 127 11 HOH HOH . H 4 HOH A 12 128 12 HOH HOH . H 4 HOH A 13 129 13 HOH HOH . H 4 HOH A 14 130 14 HOH HOH . H 4 HOH A 15 131 15 HOH HOH . H 4 HOH A 16 132 16 HOH HOH . H 4 HOH A 17 133 17 HOH HOH . H 4 HOH A 18 134 18 HOH HOH . H 4 HOH A 19 135 19 HOH HOH . H 4 HOH A 20 136 20 HOH HOH . H 4 HOH A 21 137 21 HOH HOH . H 4 HOH A 22 138 22 HOH HOH . H 4 HOH A 23 139 23 HOH HOH . H 4 HOH A 24 140 24 HOH HOH . H 4 HOH A 25 141 25 HOH HOH . H 4 HOH A 26 142 26 HOH HOH . H 4 HOH A 27 143 27 HOH HOH . H 4 HOH A 28 144 28 HOH HOH . H 4 HOH A 29 145 29 HOH HOH . H 4 HOH A 30 146 30 HOH HOH . H 4 HOH A 31 147 31 HOH HOH . H 4 HOH A 32 148 32 HOH HOH . H 4 HOH A 33 149 33 HOH HOH . H 4 HOH A 34 150 34 HOH HOH . H 4 HOH A 35 151 35 HOH HOH . H 4 HOH A 36 152 36 HOH HOH . H 4 HOH A 37 153 37 HOH HOH . H 4 HOH A 38 154 38 HOH HOH . H 4 HOH A 39 155 39 HOH HOH . H 4 HOH A 40 156 40 HOH HOH . H 4 HOH A 41 157 41 HOH HOH . H 4 HOH A 42 158 42 HOH HOH . H 4 HOH A 43 159 43 HOH HOH . H 4 HOH A 44 160 44 HOH HOH . H 4 HOH A 45 161 45 HOH HOH . H 4 HOH A 46 162 46 HOH HOH . H 4 HOH A 47 163 47 HOH HOH . H 4 HOH A 48 164 48 HOH HOH . H 4 HOH A 49 165 49 HOH HOH . H 4 HOH A 50 166 50 HOH HOH . H 4 HOH A 51 167 51 HOH HOH . H 4 HOH A 52 168 52 HOH HOH . H 4 HOH A 53 169 53 HOH HOH . H 4 HOH A 54 170 54 HOH HOH . H 4 HOH A 55 171 55 HOH HOH . H 4 HOH A 56 172 56 HOH HOH . H 4 HOH A 57 173 57 HOH HOH . H 4 HOH A 58 174 58 HOH HOH . H 4 HOH A 59 175 59 HOH HOH . H 4 HOH A 60 176 60 HOH HOH . H 4 HOH A 61 177 61 HOH HOH . H 4 HOH A 62 178 62 HOH HOH . H 4 HOH A 63 179 63 HOH HOH . H 4 HOH A 64 180 64 HOH HOH . H 4 HOH A 65 181 65 HOH HOH . H 4 HOH A 66 182 66 HOH HOH . H 4 HOH A 67 183 67 HOH HOH . H 4 HOH A 68 184 68 HOH HOH . H 4 HOH A 69 185 69 HOH HOH . H 4 HOH A 70 186 70 HOH HOH . H 4 HOH A 71 187 71 HOH HOH . H 4 HOH A 72 188 72 HOH HOH . H 4 HOH A 73 189 73 HOH HOH . H 4 HOH A 74 190 74 HOH HOH . H 4 HOH A 75 191 75 HOH HOH . H 4 HOH A 76 192 76 HOH HOH . H 4 HOH A 77 193 77 HOH HOH . H 4 HOH A 78 194 78 HOH HOH . H 4 HOH A 79 195 79 HOH HOH . H 4 HOH A 80 196 80 HOH HOH . H 4 HOH A 81 197 81 HOH HOH . H 4 HOH A 82 198 82 HOH HOH . H 4 HOH A 83 199 83 HOH HOH . H 4 HOH A 84 200 84 HOH HOH . H 4 HOH A 85 201 85 HOH HOH . H 4 HOH A 86 202 87 HOH HOH . H 4 HOH A 87 203 88 HOH HOH . H 4 HOH A 88 204 89 HOH HOH . H 4 HOH A 89 205 90 HOH HOH . H 4 HOH A 90 206 91 HOH HOH . H 4 HOH A 91 207 92 HOH HOH . H 4 HOH A 92 208 93 HOH HOH . H 4 HOH A 93 209 94 HOH HOH . H 4 HOH A 94 210 95 HOH HOH . H 4 HOH A 95 211 96 HOH HOH . H 4 HOH A 96 212 97 HOH HOH . H 4 HOH A 97 213 98 HOH HOH . H 4 HOH A 98 214 99 HOH HOH . H 4 HOH A 99 215 100 HOH HOH . H 4 HOH A 100 216 101 HOH HOH . H 4 HOH A 101 217 102 HOH HOH . H 4 HOH A 102 218 103 HOH HOH . H 4 HOH A 103 219 104 HOH HOH . H 4 HOH A 104 220 105 HOH HOH . H 4 HOH A 105 221 106 HOH HOH . H 4 HOH A 106 222 107 HOH HOH . H 4 HOH A 107 223 108 HOH HOH . H 4 HOH A 108 224 109 HOH HOH . H 4 HOH A 109 225 110 HOH HOH . H 4 HOH A 110 226 111 HOH HOH . H 4 HOH A 111 227 112 HOH HOH . H 4 HOH A 112 228 113 HOH HOH . H 4 HOH A 113 229 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . B 2 -19.12 36.401 33.279 1 17.88 ? C1 MMA 111 A 1 HETATM 2 C C2 MMA . . . B 2 -18.135 35.738 32.276 1 18.56 ? C2 MMA 111 A 1 HETATM 3 C C3 MMA . . . B 2 -18.273 36.441 30.91 1 17.6 ? C3 MMA 111 A 1 HETATM 4 C C4 MMA . . . B 2 -19.723 36.279 30.427 1 15.94 ? C4 MMA 111 A 1 HETATM 5 C C5 MMA . . . B 2 -20.666 36.914 31.468 1 16.84 ? C5 MMA 111 A 1 HETATM 6 C C6 MMA . . . B 2 -22.119 36.728 31.004 1 18.03 ? C6 MMA 111 A 1 HETATM 7 C C7 MMA . . . B 2 -19.682 38.394 34.412 1 20.42 ? C7 MMA 111 A 1 HETATM 8 O O1 MMA . . . B 2 -18.777 37.799 33.457 1 23.84 ? O1 MMA 111 A 1 HETATM 9 O O2 MMA . . . B 2 -18.474 34.348 32.122 1 20.09 ? O2 MMA 111 A 1 HETATM 10 O O3 MMA . . . B 2 -17.38 35.836 29.966 1 16.04 ? O3 MMA 111 A 1 HETATM 11 O O4 MMA . . . B 2 -19.881 36.935 29.168 1 14.03 ? O4 MMA 111 A 1 HETATM 12 O O5 MMA . . . B 2 -20.495 36.263 32.765 1 18.44 ? O5 MMA 111 A 1 HETATM 13 O O6 MMA . . . B 2 -23.014 37.3 31.957 1 20.61 ? O6 MMA 111 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #