data_3A0T
#
_model_server_result.job_id            49MoI94_LWg-pnzRkh3pkQ 
_model_server_result.datetime_utc      '2024-11-18 11:56:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a0t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    3A0T 
#
_exptl.entry_id    3A0T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3A0T 
_cell.length_a            72.943 
_cell.length_b            72.943 
_cell.length_c            91.258 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A0T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O HOH . A HOH 2 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc2 D O HOH . A HOH 3 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc3 D O HOH . A HOH 4 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc4 A OD1 ASN 58 A ASN 661 1_555 B MG MG . A MG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc5 B MG MG . A MG 800 1_555 C O2A ADP . A ADP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc6 B MG MG . A MG 800 1_555 C O1B ADP . A ADP 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3A0T 
_atom_sites.fract_transf_matrix[1][1]    0.013709 
_atom_sites.fract_transf_matrix[1][2]    0.007915 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010958 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 800 800 MG MG . 
C 3 ADP A 1 801 801 ADP ADP . 
D 4 HOH A 1 1 1 HOH HOH . 
D 4 HOH A 2 2 2 HOH HOH . 
D 4 HOH A 3 3 3 HOH HOH . 
D 4 HOH A 4 4 4 HOH HOH . 
D 4 HOH A 5 5 5 HOH HOH . 
D 4 HOH A 6 6 6 HOH HOH . 
D 4 HOH A 7 7 7 HOH HOH . 
D 4 HOH A 8 8 8 HOH HOH . 
D 4 HOH A 9 9 9 HOH HOH . 
D 4 HOH A 10 10 10 HOH HOH . 
D 4 HOH A 11 11 11 HOH HOH . 
D 4 HOH A 12 12 12 HOH HOH . 
D 4 HOH A 13 13 13 HOH HOH . 
D 4 HOH A 14 14 14 HOH HOH . 
D 4 HOH A 15 15 15 HOH HOH . 
D 4 HOH A 16 16 16 HOH HOH . 
D 4 HOH A 17 17 17 HOH HOH . 
D 4 HOH A 18 18 18 HOH HOH . 
D 4 HOH A 19 19 19 HOH HOH . 
D 4 HOH A 20 20 20 HOH HOH . 
D 4 HOH A 21 21 21 HOH HOH . 
D 4 HOH A 22 22 22 HOH HOH . 
D 4 HOH A 23 23 23 HOH HOH . 
D 4 HOH A 24 24 24 HOH HOH . 
D 4 HOH A 25 25 25 HOH HOH . 
D 4 HOH A 26 26 26 HOH HOH . 
D 4 HOH A 27 27 27 HOH HOH . 
D 4 HOH A 28 28 28 HOH HOH . 
D 4 HOH A 29 29 29 HOH HOH . 
D 4 HOH A 30 30 30 HOH HOH . 
D 4 HOH A 31 31 31 HOH HOH . 
D 4 HOH A 32 32 32 HOH HOH . 
D 4 HOH A 33 33 33 HOH HOH . 
D 4 HOH A 34 34 34 HOH HOH . 
D 4 HOH A 35 35 35 HOH HOH . 
D 4 HOH A 36 36 36 HOH HOH . 
D 4 HOH A 37 37 37 HOH HOH . 
D 4 HOH A 38 38 38 HOH HOH . 
D 4 HOH A 39 39 39 HOH HOH . 
D 4 HOH A 40 40 40 HOH HOH . 
D 4 HOH A 41 41 41 HOH HOH . 
D 4 HOH A 42 42 42 HOH HOH . 
D 4 HOH A 43 43 43 HOH HOH . 
D 4 HOH A 44 44 44 HOH HOH . 
D 4 HOH A 45 45 45 HOH HOH . 
D 4 HOH A 46 46 46 HOH HOH . 
D 4 HOH A 47 47 47 HOH HOH . 
D 4 HOH A 48 48 48 HOH HOH . 
D 4 HOH A 49 49 49 HOH HOH . 
D 4 HOH A 50 50 50 HOH HOH . 
D 4 HOH A 51 51 51 HOH HOH . 
D 4 HOH A 52 52 52 HOH HOH . 
D 4 HOH A 53 53 53 HOH HOH . 
D 4 HOH A 54 54 54 HOH HOH . 
D 4 HOH A 55 55 55 HOH HOH . 
D 4 HOH A 56 56 56 HOH HOH . 
D 4 HOH A 57 57 57 HOH HOH . 
D 4 HOH A 58 58 58 HOH HOH . 
D 4 HOH A 59 59 59 HOH HOH . 
D 4 HOH A 60 60 60 HOH HOH . 
D 4 HOH A 61 61 61 HOH HOH . 
D 4 HOH A 62 62 62 HOH HOH . 
D 4 HOH A 63 63 63 HOH HOH . 
D 4 HOH A 64 64 64 HOH HOH . 
D 4 HOH A 65 65 65 HOH HOH . 
D 4 HOH A 66 66 66 HOH HOH . 
D 4 HOH A 67 67 67 HOH HOH . 
D 4 HOH A 68 68 68 HOH HOH . 
D 4 HOH A 69 69 69 HOH HOH . 
D 4 HOH A 70 70 70 HOH HOH . 
D 4 HOH A 71 71 71 HOH HOH . 
D 4 HOH A 72 72 72 HOH HOH . 
D 4 HOH A 73 73 73 HOH HOH . 
D 4 HOH A 74 74 74 HOH HOH . 
D 4 HOH A 75 75 75 HOH HOH . 
D 4 HOH A 76 76 76 HOH HOH . 
D 4 HOH A 77 77 77 HOH HOH . 
D 4 HOH A 78 78 78 HOH HOH . 
D 4 HOH A 79 79 79 HOH HOH . 
D 4 HOH A 80 80 80 HOH HOH . 
D 4 HOH A 81 81 81 HOH HOH . 
D 4 HOH A 82 82 82 HOH HOH . 
D 4 HOH A 83 83 83 HOH HOH . 
D 4 HOH A 84 84 84 HOH HOH . 
D 4 HOH A 85 85 85 HOH HOH . 
D 4 HOH A 86 86 86 HOH HOH . 
D 4 HOH A 87 87 87 HOH HOH . 
D 4 HOH A 88 88 88 HOH HOH . 
D 4 HOH A 89 89 89 HOH HOH . 
D 4 HOH A 90 90 90 HOH HOH . 
D 4 HOH A 91 91 91 HOH HOH . 
D 4 HOH A 92 92 92 HOH HOH . 
D 4 HOH A 93 93 93 HOH HOH . 
D 4 HOH A 94 94 94 HOH HOH . 
D 4 HOH A 95 95 95 HOH HOH . 
D 4 HOH A 96 96 96 HOH HOH . 
D 4 HOH A 97 97 97 HOH HOH . 
D 4 HOH A 98 98 98 HOH HOH . 
D 4 HOH A 99 99 99 HOH HOH . 
D 4 HOH A 100 100 100 HOH HOH . 
D 4 HOH A 101 101 101 HOH HOH . 
D 4 HOH A 102 102 102 HOH HOH . 
D 4 HOH A 103 103 103 HOH HOH . 
D 4 HOH A 104 104 104 HOH HOH . 
D 4 HOH A 105 105 105 HOH HOH . 
D 4 HOH A 106 106 106 HOH HOH . 
D 4 HOH A 107 107 107 HOH HOH . 
D 4 HOH A 108 108 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -34.414 12.585 41.214 1 18 ? PB ADP 801 A 1 
HETATM 2 O O1B ADP . . . C 3 -33.737 12.701 39.872 1 18.76 ? O1B ADP 801 A 1 
HETATM 3 O O2B ADP . . . C 3 -34.219 11.247 41.88 1 17.73 ? O2B ADP 801 A 1 
HETATM 4 O O3B ADP . . . C 3 -34.141 13.786 42.093 1 17.89 ? O3B ADP 801 A 1 
HETATM 5 P PA ADP . . . C 3 -36.795 12.437 39.579 1 15.93 ? PA ADP 801 A 1 
HETATM 6 O O1A ADP . . . C 3 -38.268 12.574 39.865 1 16.31 ? O1A ADP 801 A 1 
HETATM 7 O O2A ADP . . . C 3 -36.123 13.243 38.493 1 17.53 ? O2A ADP 801 A 1 
HETATM 8 O O3A ADP . . . C 3 -36.013 12.631 40.977 1 15.96 ? O3A ADP 801 A 1 
HETATM 9 O O5' ADP . . . C 3 -36.555 10.87 39.283 1 17.83 ? O5' ADP 801 A 1 
HETATM 10 C C5' ADP . . . C 3 -37.073 9.927 40.224 1 13.81 ? C5' ADP 801 A 1 
HETATM 11 C C4' ADP . . . C 3 -36.409 8.554 40.064 1 13.39 ? C4' ADP 801 A 1 
HETATM 12 O O4' ADP . . . C 3 -36.754 8.004 38.796 1 17.11 ? O4' ADP 801 A 1 
HETATM 13 C C3' ADP . . . C 3 -34.886 8.56 40.048 1 18.64 ? C3' ADP 801 A 1 
HETATM 14 O O3' ADP . . . C 3 -34.302 8.67 41.358 1 19.6 ? O3' ADP 801 A 1 
HETATM 15 C C2' ADP . . . C 3 -34.583 7.219 39.393 1 21.23 ? C2' ADP 801 A 1 
HETATM 16 O O2' ADP . . . C 3 -34.826 6.176 40.354 1 18.82 ? O2' ADP 801 A 1 
HETATM 17 C C1' ADP . . . C 3 -35.717 7.108 38.38 1 16.18 ? C1' ADP 801 A 1 
HETATM 18 N N9 ADP . . . C 3 -35.268 7.56 37.051 1 19.02 ? N9 ADP 801 A 1 
HETATM 19 C C8 ADP . . . C 3 -35.495 8.777 36.506 1 16.43 ? C8 ADP 801 A 1 
HETATM 20 N N7 ADP . . . C 3 -34.995 8.842 35.246 1 17.3 ? N7 ADP 801 A 1 
HETATM 21 C C5 ADP . . . C 3 -34.426 7.633 34.998 1 14.98 ? C5 ADP 801 A 1 
HETATM 22 C C6 ADP . . . C 3 -33.647 7.057 33.885 1 17.75 ? C6 ADP 801 A 1 
HETATM 23 N N6 ADP . . . C 3 -33.433 7.786 32.757 1 16.98 ? N6 ADP 801 A 1 
HETATM 24 N N1 ADP . . . C 3 -33.222 5.775 34.016 1 16.94 ? N1 ADP 801 A 1 
HETATM 25 C C2 ADP . . . C 3 -33.441 5.046 35.144 1 20.29 ? C2 ADP 801 A 1 
HETATM 26 N N3 ADP . . . C 3 -34.096 5.518 36.228 1 16.97 ? N3 ADP 801 A 1 
HETATM 27 C C4 ADP . . . C 3 -34.607 6.794 36.192 1 16.86 ? C4 ADP 801 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           27 
#