data_3A0W # _model_server_result.job_id wXriqVEE6v1Fvuv0v8Vr0g _model_server_result.datetime_utc '2024-11-18 09:18:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":803}' # _entry.id 3A0W # _exptl.entry_id 3A0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A0W _cell.length_a 59.092 _cell.length_b 61.148 _cell.length_c 90.287 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 267 n n C1 H11 MPD sing 268 n n C1 H12 MPD sing 269 n n C1 H13 MPD sing 270 n n C2 O2 MPD sing 271 n n C2 CM MPD sing 272 n n C2 C3 MPD sing 273 n n O2 HO2 MPD sing 274 n n CM HM1 MPD sing 275 n n CM HM2 MPD sing 276 n n CM HM3 MPD sing 277 n n C3 C4 MPD sing 278 n n C3 H31 MPD sing 279 n n C3 H32 MPD sing 280 n n C4 O4 MPD sing 281 n n C4 C5 MPD sing 282 n n C4 H4 MPD sing 283 n n O4 HO4 MPD sing 284 n n C5 H51 MPD sing 285 n n C5 H52 MPD sing 286 n n C5 H53 MPD sing 287 n n # _atom_sites.entry_id 3A0W _atom_sites.fract_transf_matrix[1][1] 0.016923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EMC A 1 801 801 EMC EMC . D 2 EMC A 1 802 802 EMC EMC . E 3 EMT A 1 803 803 EMT EMT . F 4 MPD A 1 804 804 MPD MPD . G 2 EMC B 1 801 801 EMC EMC . H 2 EMC B 1 802 802 EMC EMC . I 4 MPD B 1 803 803 MPD MPD . J 5 HOH A 1 1 1 HOH HOH . J 5 HOH A 2 3 3 HOH HOH . J 5 HOH A 3 4 4 HOH HOH . J 5 HOH A 4 7 7 HOH HOH . J 5 HOH A 5 8 8 HOH HOH . J 5 HOH A 6 9 9 HOH HOH . J 5 HOH A 7 11 11 HOH HOH . J 5 HOH A 8 12 12 HOH HOH . J 5 HOH A 9 14 14 HOH HOH . J 5 HOH A 10 18 18 HOH HOH . J 5 HOH A 11 22 22 HOH HOH . J 5 HOH A 12 24 24 HOH HOH . J 5 HOH A 13 25 25 HOH HOH . J 5 HOH A 14 26 26 HOH HOH . J 5 HOH A 15 28 28 HOH HOH . J 5 HOH A 16 31 31 HOH HOH . J 5 HOH A 17 33 33 HOH HOH . J 5 HOH A 18 35 35 HOH HOH . J 5 HOH A 19 36 36 HOH HOH . J 5 HOH A 20 37 37 HOH HOH . J 5 HOH A 21 39 39 HOH HOH . J 5 HOH A 22 40 40 HOH HOH . J 5 HOH A 23 41 41 HOH HOH . J 5 HOH A 24 43 43 HOH HOH . J 5 HOH A 25 44 44 HOH HOH . J 5 HOH A 26 48 48 HOH HOH . J 5 HOH A 27 50 50 HOH HOH . J 5 HOH A 28 52 52 HOH HOH . J 5 HOH A 29 54 54 HOH HOH . J 5 HOH A 30 58 58 HOH HOH . J 5 HOH A 31 60 60 HOH HOH . J 5 HOH A 32 62 62 HOH HOH . J 5 HOH A 33 63 63 HOH HOH . J 5 HOH A 34 64 64 HOH HOH . J 5 HOH A 35 65 65 HOH HOH . J 5 HOH A 36 67 67 HOH HOH . J 5 HOH A 37 70 70 HOH HOH . J 5 HOH A 38 71 71 HOH HOH . J 5 HOH A 39 72 72 HOH HOH . J 5 HOH A 40 73 73 HOH HOH . J 5 HOH A 41 74 74 HOH HOH . J 5 HOH A 42 75 75 HOH HOH . J 5 HOH A 43 78 78 HOH HOH . J 5 HOH A 44 79 79 HOH HOH . J 5 HOH A 45 80 80 HOH HOH . J 5 HOH A 46 81 81 HOH HOH . J 5 HOH A 47 82 82 HOH HOH . J 5 HOH A 48 85 85 HOH HOH . J 5 HOH A 49 86 86 HOH HOH . J 5 HOH A 50 87 87 HOH HOH . J 5 HOH A 51 89 89 HOH HOH . J 5 HOH A 52 91 91 HOH HOH . J 5 HOH A 53 93 93 HOH HOH . J 5 HOH A 54 99 99 HOH HOH . J 5 HOH A 55 100 100 HOH HOH . J 5 HOH A 56 101 101 HOH HOH . J 5 HOH A 57 103 103 HOH HOH . J 5 HOH A 58 105 105 HOH HOH . J 5 HOH A 59 112 112 HOH HOH . J 5 HOH A 60 113 113 HOH HOH . J 5 HOH A 61 115 115 HOH HOH . J 5 HOH A 62 116 116 HOH HOH . J 5 HOH A 63 118 118 HOH HOH . J 5 HOH A 64 119 119 HOH HOH . J 5 HOH A 65 122 122 HOH HOH . J 5 HOH A 66 123 123 HOH HOH . J 5 HOH A 67 124 124 HOH HOH . J 5 HOH A 68 126 126 HOH HOH . J 5 HOH A 69 127 127 HOH HOH . J 5 HOH A 70 131 131 HOH HOH . J 5 HOH A 71 135 135 HOH HOH . J 5 HOH A 72 138 138 HOH HOH . J 5 HOH A 73 139 139 HOH HOH . J 5 HOH A 74 140 140 HOH HOH . J 5 HOH A 75 142 142 HOH HOH . J 5 HOH A 76 143 143 HOH HOH . J 5 HOH A 77 144 144 HOH HOH . J 5 HOH A 78 145 145 HOH HOH . J 5 HOH A 79 146 146 HOH HOH . J 5 HOH A 80 148 148 HOH HOH . J 5 HOH A 81 149 149 HOH HOH . J 5 HOH A 82 150 150 HOH HOH . J 5 HOH A 83 152 152 HOH HOH . J 5 HOH A 84 153 153 HOH HOH . J 5 HOH A 85 154 154 HOH HOH . J 5 HOH A 86 158 158 HOH HOH . J 5 HOH A 87 159 159 HOH HOH . J 5 HOH A 88 162 162 HOH HOH . J 5 HOH A 89 164 164 HOH HOH . J 5 HOH A 90 165 165 HOH HOH . J 5 HOH A 91 166 166 HOH HOH . J 5 HOH A 92 167 167 HOH HOH . J 5 HOH A 93 170 170 HOH HOH . J 5 HOH A 94 173 173 HOH HOH . J 5 HOH A 95 175 175 HOH HOH . J 5 HOH A 96 180 180 HOH HOH . J 5 HOH A 97 181 181 HOH HOH . J 5 HOH A 98 182 182 HOH HOH . J 5 HOH A 99 184 184 HOH HOH . J 5 HOH A 100 185 185 HOH HOH . J 5 HOH A 101 189 189 HOH HOH . J 5 HOH A 102 191 191 HOH HOH . J 5 HOH A 103 192 192 HOH HOH . J 5 HOH A 104 193 193 HOH HOH . J 5 HOH A 105 195 195 HOH HOH . J 5 HOH A 106 197 197 HOH HOH . J 5 HOH A 107 198 198 HOH HOH . J 5 HOH A 108 199 199 HOH HOH . J 5 HOH A 109 200 200 HOH HOH . J 5 HOH A 110 202 202 HOH HOH . J 5 HOH A 111 203 203 HOH HOH . J 5 HOH A 112 204 204 HOH HOH . J 5 HOH A 113 205 205 HOH HOH . J 5 HOH A 114 206 206 HOH HOH . J 5 HOH A 115 207 207 HOH HOH . J 5 HOH A 116 209 209 HOH HOH . J 5 HOH A 117 210 210 HOH HOH . J 5 HOH A 118 213 213 HOH HOH . J 5 HOH A 119 214 214 HOH HOH . J 5 HOH A 120 216 216 HOH HOH . J 5 HOH A 121 219 219 HOH HOH . J 5 HOH A 122 220 220 HOH HOH . J 5 HOH A 123 221 221 HOH HOH . J 5 HOH A 124 224 224 HOH HOH . J 5 HOH A 125 228 228 HOH HOH . J 5 HOH A 126 230 230 HOH HOH . J 5 HOH A 127 231 231 HOH HOH . J 5 HOH A 128 232 232 HOH HOH . K 5 HOH B 1 2 2 HOH HOH . K 5 HOH B 2 5 5 HOH HOH . K 5 HOH B 3 6 6 HOH HOH . K 5 HOH B 4 10 10 HOH HOH . K 5 HOH B 5 13 13 HOH HOH . K 5 HOH B 6 15 15 HOH HOH . K 5 HOH B 7 16 16 HOH HOH . K 5 HOH B 8 17 17 HOH HOH . K 5 HOH B 9 19 19 HOH HOH . K 5 HOH B 10 20 20 HOH HOH . K 5 HOH B 11 21 21 HOH HOH . K 5 HOH B 12 23 23 HOH HOH . K 5 HOH B 13 27 27 HOH HOH . K 5 HOH B 14 29 29 HOH HOH . K 5 HOH B 15 30 30 HOH HOH . K 5 HOH B 16 32 32 HOH HOH . K 5 HOH B 17 34 34 HOH HOH . K 5 HOH B 18 38 38 HOH HOH . K 5 HOH B 19 42 42 HOH HOH . K 5 HOH B 20 45 45 HOH HOH . K 5 HOH B 21 46 46 HOH HOH . K 5 HOH B 22 47 47 HOH HOH . K 5 HOH B 23 49 49 HOH HOH . K 5 HOH B 24 51 51 HOH HOH . K 5 HOH B 25 53 53 HOH HOH . K 5 HOH B 26 55 55 HOH HOH . K 5 HOH B 27 56 56 HOH HOH . K 5 HOH B 28 57 57 HOH HOH . K 5 HOH B 29 59 59 HOH HOH . K 5 HOH B 30 61 61 HOH HOH . K 5 HOH B 31 66 66 HOH HOH . K 5 HOH B 32 68 68 HOH HOH . K 5 HOH B 33 69 69 HOH HOH . K 5 HOH B 34 76 76 HOH HOH . K 5 HOH B 35 77 77 HOH HOH . K 5 HOH B 36 83 83 HOH HOH . K 5 HOH B 37 84 84 HOH HOH . K 5 HOH B 38 88 88 HOH HOH . K 5 HOH B 39 90 90 HOH HOH . K 5 HOH B 40 92 92 HOH HOH . K 5 HOH B 41 94 94 HOH HOH . K 5 HOH B 42 95 95 HOH HOH . K 5 HOH B 43 96 96 HOH HOH . K 5 HOH B 44 97 97 HOH HOH . K 5 HOH B 45 98 98 HOH HOH . K 5 HOH B 46 102 102 HOH HOH . K 5 HOH B 47 104 104 HOH HOH . K 5 HOH B 48 106 106 HOH HOH . K 5 HOH B 49 107 107 HOH HOH . K 5 HOH B 50 108 108 HOH HOH . K 5 HOH B 51 109 109 HOH HOH . K 5 HOH B 52 110 110 HOH HOH . K 5 HOH B 53 111 111 HOH HOH . K 5 HOH B 54 114 114 HOH HOH . K 5 HOH B 55 117 117 HOH HOH . K 5 HOH B 56 120 120 HOH HOH . K 5 HOH B 57 121 121 HOH HOH . K 5 HOH B 58 125 125 HOH HOH . K 5 HOH B 59 128 128 HOH HOH . K 5 HOH B 60 129 129 HOH HOH . K 5 HOH B 61 130 130 HOH HOH . K 5 HOH B 62 132 132 HOH HOH . K 5 HOH B 63 133 133 HOH HOH . K 5 HOH B 64 134 134 HOH HOH . K 5 HOH B 65 136 136 HOH HOH . K 5 HOH B 66 137 137 HOH HOH . K 5 HOH B 67 141 141 HOH HOH . K 5 HOH B 68 147 147 HOH HOH . K 5 HOH B 69 151 151 HOH HOH . K 5 HOH B 70 155 155 HOH HOH . K 5 HOH B 71 156 156 HOH HOH . K 5 HOH B 72 157 157 HOH HOH . K 5 HOH B 73 160 160 HOH HOH . K 5 HOH B 74 161 161 HOH HOH . K 5 HOH B 75 163 163 HOH HOH . K 5 HOH B 76 168 168 HOH HOH . K 5 HOH B 77 169 169 HOH HOH . K 5 HOH B 78 171 171 HOH HOH . K 5 HOH B 79 172 172 HOH HOH . K 5 HOH B 80 174 174 HOH HOH . K 5 HOH B 81 176 176 HOH HOH . K 5 HOH B 82 177 177 HOH HOH . K 5 HOH B 83 178 178 HOH HOH . K 5 HOH B 84 179 179 HOH HOH . K 5 HOH B 85 183 183 HOH HOH . K 5 HOH B 86 186 186 HOH HOH . K 5 HOH B 87 187 187 HOH HOH . K 5 HOH B 88 188 188 HOH HOH . K 5 HOH B 89 190 190 HOH HOH . K 5 HOH B 90 194 194 HOH HOH . K 5 HOH B 91 196 196 HOH HOH . K 5 HOH B 92 201 201 HOH HOH . K 5 HOH B 93 208 208 HOH HOH . K 5 HOH B 94 211 211 HOH HOH . K 5 HOH B 95 212 212 HOH HOH . K 5 HOH B 96 215 215 HOH HOH . K 5 HOH B 97 217 217 HOH HOH . K 5 HOH B 98 218 218 HOH HOH . K 5 HOH B 99 222 222 HOH HOH . K 5 HOH B 100 223 223 HOH HOH . K 5 HOH B 101 225 225 HOH HOH . K 5 HOH B 102 226 226 HOH HOH . K 5 HOH B 103 227 227 HOH HOH . K 5 HOH B 104 229 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . I 4 70.187 53.634 9.372 1 37.58 ? C1 MPD 803 B 1 HETATM 2 C C2 MPD . . . I 4 69.896 54.149 10.779 1 37.07 ? C2 MPD 803 B 1 HETATM 3 O O2 MPD . . . I 4 68.898 55.186 10.664 1 39.54 ? O2 MPD 803 B 1 HETATM 4 C CM MPD . . . I 4 71.141 54.791 11.382 1 36.48 ? CM MPD 803 B 1 HETATM 5 C C3 MPD . . . I 4 69.414 53.005 11.672 1 34.78 ? C3 MPD 803 B 1 HETATM 6 C C4 MPD . . . I 4 67.917 52.632 11.678 1 33.22 ? C4 MPD 803 B 1 HETATM 7 O O4 MPD . . . I 4 67.118 53.138 10.612 1 26.46 ? O4 MPD 803 B 1 HETATM 8 C C5 MPD . . . I 4 67.763 51.107 11.743 1 29.47 ? C5 MPD 803 B 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #