data_3A14 # _model_server_result.job_id '_l4LUTPQ2t8-9sMn97vwEg' _model_server_result.datetime_utc '2024-11-05 00:40:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":800}' # _entry.id 3A14 # _exptl.entry_id 3A14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A14 _cell.length_a 108.527 _cell.length_b 108.527 _cell.length_c 74.178 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 142 A ASP 142 1_555 E MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A OE1 GLU 144 A GLU 144 1_555 E MG MG . A MG 900 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc3 A OE2 GLU 209 A GLU 209 1_555 E MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 J O HOH . A HOH 500 1_555 E MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 J O HOH . A HOH 501 1_555 E MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc6 J O HOH . A HOH 502 1_555 E MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc7 B OD1 ASP 142 B ASP 142 1_555 H MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc8 B OE2 GLU 209 B GLU 209 1_555 H MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 K O HOH . B HOH 600 1_555 H MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc10 K O HOH . B HOH 601 1_555 H MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3A14 _atom_sites.fract_transf_matrix[1][1] 0.009214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 3003 3003 NDP NDP . D 2 NDP A 1 3001 3001 NDP NDP . E 3 MG A 1 900 900 MG MG . F 4 MPD A 1 800 800 MPD MPD . G 2 NDP B 1 3002 3002 NDP NDP . H 3 MG B 1 901 901 MG MG . I 4 MPD B 1 801 801 MPD MPD . J 5 HOH A 1 377 377 HOH HOH . J 5 HOH A 2 378 378 HOH HOH . J 5 HOH A 3 379 390 HOH HOH . J 5 HOH A 4 380 380 HOH HOH . J 5 HOH A 5 381 381 HOH HOH . J 5 HOH A 6 382 382 HOH HOH . J 5 HOH A 7 383 383 HOH HOH . J 5 HOH A 8 384 384 HOH HOH . J 5 HOH A 9 385 385 HOH HOH . J 5 HOH A 10 386 386 HOH HOH . J 5 HOH A 11 387 387 HOH HOH . J 5 HOH A 12 389 389 HOH HOH . J 5 HOH A 13 390 390 HOH HOH . J 5 HOH A 14 391 391 HOH HOH . J 5 HOH A 15 392 392 HOH HOH . J 5 HOH A 16 393 393 HOH HOH . J 5 HOH A 17 394 394 HOH HOH . J 5 HOH A 18 395 395 HOH HOH . J 5 HOH A 19 396 396 HOH HOH . J 5 HOH A 20 398 398 HOH HOH . J 5 HOH A 21 399 399 HOH HOH . J 5 HOH A 22 400 400 HOH HOH . J 5 HOH A 23 401 401 HOH HOH . J 5 HOH A 24 402 402 HOH HOH . J 5 HOH A 25 403 403 HOH HOH . J 5 HOH A 26 404 404 HOH HOH . J 5 HOH A 27 406 406 HOH HOH . J 5 HOH A 28 407 407 HOH HOH . J 5 HOH A 29 408 408 HOH HOH . J 5 HOH A 30 409 409 HOH HOH . J 5 HOH A 31 410 410 HOH HOH . J 5 HOH A 32 411 411 HOH HOH . J 5 HOH A 33 412 412 HOH HOH . J 5 HOH A 34 413 413 HOH HOH . J 5 HOH A 35 414 414 HOH HOH . J 5 HOH A 36 415 415 HOH HOH . J 5 HOH A 37 416 416 HOH HOH . J 5 HOH A 38 417 417 HOH HOH . J 5 HOH A 39 418 418 HOH HOH . J 5 HOH A 40 419 419 HOH HOH . J 5 HOH A 41 420 420 HOH HOH . J 5 HOH A 42 421 421 HOH HOH . J 5 HOH A 43 422 422 HOH HOH . J 5 HOH A 44 423 423 HOH HOH . J 5 HOH A 45 424 424 HOH HOH . J 5 HOH A 46 425 425 HOH HOH . J 5 HOH A 47 426 426 HOH HOH . J 5 HOH A 48 427 427 HOH HOH . J 5 HOH A 49 428 428 HOH HOH . J 5 HOH A 50 429 429 HOH HOH . J 5 HOH A 51 430 430 HOH HOH . J 5 HOH A 52 431 431 HOH HOH . J 5 HOH A 53 432 432 HOH HOH . J 5 HOH A 54 433 433 HOH HOH . J 5 HOH A 55 434 434 HOH HOH . J 5 HOH A 56 435 435 HOH HOH . J 5 HOH A 57 436 436 HOH HOH . J 5 HOH A 58 437 437 HOH HOH . J 5 HOH A 59 439 439 HOH HOH . J 5 HOH A 60 440 440 HOH HOH . J 5 HOH A 61 441 441 HOH HOH . J 5 HOH A 62 443 443 HOH HOH . J 5 HOH A 63 444 444 HOH HOH . J 5 HOH A 64 445 445 HOH HOH . J 5 HOH A 65 446 446 HOH HOH . J 5 HOH A 66 447 447 HOH HOH . J 5 HOH A 67 448 448 HOH HOH . J 5 HOH A 68 449 449 HOH HOH . J 5 HOH A 69 451 451 HOH HOH . J 5 HOH A 70 452 452 HOH HOH . J 5 HOH A 71 453 453 HOH HOH . J 5 HOH A 72 498 498 HOH HOH . J 5 HOH A 73 499 499 HOH HOH . J 5 HOH A 74 500 500 HOH HOH . J 5 HOH A 75 501 501 HOH HOH . J 5 HOH A 76 502 502 HOH HOH . J 5 HOH A 77 504 504 HOH HOH . K 5 HOH B 1 377 377 HOH HOH . K 5 HOH B 2 378 378 HOH HOH . K 5 HOH B 3 379 379 HOH HOH . K 5 HOH B 4 380 380 HOH HOH . K 5 HOH B 5 381 381 HOH HOH . K 5 HOH B 6 383 383 HOH HOH . K 5 HOH B 7 384 384 HOH HOH . K 5 HOH B 8 385 385 HOH HOH . K 5 HOH B 9 386 386 HOH HOH . K 5 HOH B 10 387 387 HOH HOH . K 5 HOH B 11 388 388 HOH HOH . K 5 HOH B 12 389 389 HOH HOH . K 5 HOH B 13 390 388 HOH HOH . K 5 HOH B 14 391 391 HOH HOH . K 5 HOH B 15 392 392 HOH HOH . K 5 HOH B 16 393 438 HOH HOH . K 5 HOH B 17 394 394 HOH HOH . K 5 HOH B 18 395 395 HOH HOH . K 5 HOH B 19 396 396 HOH HOH . K 5 HOH B 20 398 398 HOH HOH . K 5 HOH B 21 399 399 HOH HOH . K 5 HOH B 22 400 400 HOH HOH . K 5 HOH B 23 401 401 HOH HOH . K 5 HOH B 24 402 402 HOH HOH . K 5 HOH B 25 403 403 HOH HOH . K 5 HOH B 26 404 404 HOH HOH . K 5 HOH B 27 406 406 HOH HOH . K 5 HOH B 28 407 407 HOH HOH . K 5 HOH B 29 408 408 HOH HOH . K 5 HOH B 30 409 409 HOH HOH . K 5 HOH B 31 410 410 HOH HOH . K 5 HOH B 32 411 411 HOH HOH . K 5 HOH B 33 412 412 HOH HOH . K 5 HOH B 34 413 413 HOH HOH . K 5 HOH B 35 414 414 HOH HOH . K 5 HOH B 36 415 415 HOH HOH . K 5 HOH B 37 416 416 HOH HOH . K 5 HOH B 38 417 417 HOH HOH . K 5 HOH B 39 418 418 HOH HOH . K 5 HOH B 40 419 419 HOH HOH . K 5 HOH B 41 420 420 HOH HOH . K 5 HOH B 42 421 421 HOH HOH . K 5 HOH B 43 422 422 HOH HOH . K 5 HOH B 44 423 423 HOH HOH . K 5 HOH B 45 424 424 HOH HOH . K 5 HOH B 46 425 425 HOH HOH . K 5 HOH B 47 426 426 HOH HOH . K 5 HOH B 48 427 427 HOH HOH . K 5 HOH B 49 428 428 HOH HOH . K 5 HOH B 50 429 429 HOH HOH . K 5 HOH B 51 430 430 HOH HOH . K 5 HOH B 52 431 431 HOH HOH . K 5 HOH B 53 432 432 HOH HOH . K 5 HOH B 54 433 433 HOH HOH . K 5 HOH B 55 434 434 HOH HOH . K 5 HOH B 56 435 435 HOH HOH . K 5 HOH B 57 436 436 HOH HOH . K 5 HOH B 58 437 437 HOH HOH . K 5 HOH B 59 438 438 HOH HOH . K 5 HOH B 60 439 439 HOH HOH . K 5 HOH B 61 440 440 HOH HOH . K 5 HOH B 62 441 441 HOH HOH . K 5 HOH B 63 442 442 HOH HOH . K 5 HOH B 64 443 443 HOH HOH . K 5 HOH B 65 444 444 HOH HOH . K 5 HOH B 66 445 445 HOH HOH . K 5 HOH B 67 446 446 HOH HOH . K 5 HOH B 68 447 447 HOH HOH . K 5 HOH B 69 449 449 HOH HOH . K 5 HOH B 70 450 450 HOH HOH . K 5 HOH B 71 451 451 HOH HOH . K 5 HOH B 72 452 452 HOH HOH . K 5 HOH B 73 453 453 HOH HOH . K 5 HOH B 74 454 454 HOH HOH . K 5 HOH B 75 456 456 HOH HOH . K 5 HOH B 76 457 457 HOH HOH . K 5 HOH B 77 458 458 HOH HOH . K 5 HOH B 78 459 459 HOH HOH . K 5 HOH B 79 460 460 HOH HOH . K 5 HOH B 80 461 461 HOH HOH . K 5 HOH B 81 462 462 HOH HOH . K 5 HOH B 82 463 463 HOH HOH . K 5 HOH B 83 464 464 HOH HOH . K 5 HOH B 84 465 465 HOH HOH . K 5 HOH B 85 466 466 HOH HOH . K 5 HOH B 86 467 467 HOH HOH . K 5 HOH B 87 468 468 HOH HOH . K 5 HOH B 88 470 470 HOH HOH . K 5 HOH B 89 471 471 HOH HOH . K 5 HOH B 90 472 472 HOH HOH . K 5 HOH B 91 473 473 HOH HOH . K 5 HOH B 92 474 474 HOH HOH . K 5 HOH B 93 475 475 HOH HOH . K 5 HOH B 94 500 500 HOH HOH . K 5 HOH B 95 503 503 HOH HOH . K 5 HOH B 96 505 505 HOH HOH . K 5 HOH B 97 555 555 HOH HOH . K 5 HOH B 98 556 556 HOH HOH . K 5 HOH B 99 600 600 HOH HOH . K 5 HOH B 100 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 4 47.519 35.962 43.967 1 49.68 ? C1 MPD 800 A 1 HETATM 2 C C2 MPD . . . F 4 47.165 34.496 43.955 1 48.35 ? C2 MPD 800 A 1 HETATM 3 O O2 MPD . . . F 4 46.189 34.269 44.999 1 50.22 ? O2 MPD 800 A 1 HETATM 4 C CM MPD . . . F 4 46.373 34.28 42.7 1 48.93 ? CM MPD 800 A 1 HETATM 5 C C3 MPD . . . F 4 48.352 33.508 44.128 1 48.37 ? C3 MPD 800 A 1 HETATM 6 C C4 MPD . . . F 4 49.805 33.958 43.828 1 49.35 ? C4 MPD 800 A 1 HETATM 7 O O4 MPD . . . F 4 50.691 32.884 44.014 1 52.43 ? O4 MPD 800 A 1 HETATM 8 C C5 MPD . . . F 4 50.152 34.35 42.407 1 48.08 ? C5 MPD 800 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #