data_3A1L # _model_server_result.job_id b6bB9lewiuC1H9qWBLwm9Q _model_server_result.datetime_utc '2024-10-19 12:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3A1L # _exptl.entry_id 3A1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A1L _cell.length_a 45.374 _cell.length_b 68.224 _cell.length_c 139.119 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 364 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 364 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 500 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.376 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 177 n n CHA C4D HEM doub 178 n n CHA HHA HEM sing 179 n n CHB C4A HEM sing 180 n n CHB C1B HEM doub 181 n n CHB HHB HEM sing 182 n n CHC C4B HEM sing 183 n n CHC C1C HEM doub 184 n n CHC HHC HEM sing 185 n n CHD C4C HEM doub 186 n n CHD C1D HEM sing 187 n n CHD HHD HEM sing 188 n n C1A C2A HEM doub 189 n y C1A NA HEM sing 190 n y C2A C3A HEM sing 191 n y C2A CAA HEM sing 192 n n C3A C4A HEM doub 193 n y C3A CMA HEM sing 194 n n C4A NA HEM sing 195 n y CMA HMA HEM sing 196 n n CMA HMAA HEM sing 197 n n CMA HMAB HEM sing 198 n n CAA CBA HEM sing 199 n n CAA HAA HEM sing 200 n n CAA HAAA HEM sing 201 n n CBA CGA HEM sing 202 n n CBA HBA HEM sing 203 n n CBA HBAA HEM sing 204 n n CGA O1A HEM doub 205 n n CGA O2A HEM sing 206 n n C1B C2B HEM sing 207 n n C1B NB HEM sing 208 n n C2B C3B HEM doub 209 n n C2B CMB HEM sing 210 n n C3B C4B HEM sing 211 n n C3B CAB HEM sing 212 n n C4B NB HEM doub 213 n n CMB HMB HEM sing 214 n n CMB HMBA HEM sing 215 n n CMB HMBB HEM sing 216 n n CAB CBB HEM doub 217 n n CAB HAB HEM sing 218 n n CBB HBB HEM sing 219 n n CBB HBBA HEM sing 220 n n C1C C2C HEM sing 221 n y C1C NC HEM sing 222 n y C2C C3C HEM doub 223 n y C2C CMC HEM sing 224 n n C3C C4C HEM sing 225 n y C3C CAC HEM sing 226 n n C4C NC HEM sing 227 n y CMC HMC HEM sing 228 n n CMC HMCA HEM sing 229 n n CMC HMCB HEM sing 230 n n CAC CBC HEM doub 231 n n CAC HAC HEM sing 232 n n CBC HBC HEM sing 233 n n CBC HBCA HEM sing 234 n n C1D C2D HEM sing 235 n n C1D ND HEM doub 236 n n C2D C3D HEM doub 237 n n C2D CMD HEM sing 238 n n C3D C4D HEM sing 239 n n C3D CAD HEM sing 240 n n C4D ND HEM sing 241 n n CMD HMD HEM sing 242 n n CMD HMDA HEM sing 243 n n CMD HMDB HEM sing 244 n n CAD CBD HEM sing 245 n n CAD HAD HEM sing 246 n n CAD HADA HEM sing 247 n n CBD CGD HEM sing 248 n n CBD HBD HEM sing 249 n n CBD HBDA HEM sing 250 n n CGD O1D HEM doub 251 n n CGD O2D HEM sing 252 n n O2A H2A HEM sing 253 n n O2D H2D HEM sing 254 n n FE NA HEM sing 255 n n FE NB HEM sing 256 n n FE NC HEM sing 257 n n FE ND HEM sing 258 n n # _atom_sites.entry_id 3A1L _atom_sites.fract_transf_matrix[1][1] 0.022039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 2CC A 1 501 501 2CC 2CC . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 624 624 HOH HOH . D 4 HOH A 24 625 625 HOH HOH . D 4 HOH A 25 627 627 HOH HOH . D 4 HOH A 26 628 628 HOH HOH . D 4 HOH A 27 629 629 HOH HOH . D 4 HOH A 28 630 630 HOH HOH . D 4 HOH A 29 631 631 HOH HOH . D 4 HOH A 30 632 632 HOH HOH . D 4 HOH A 31 633 633 HOH HOH . D 4 HOH A 32 634 634 HOH HOH . D 4 HOH A 33 635 635 HOH HOH . D 4 HOH A 34 636 636 HOH HOH . D 4 HOH A 35 637 637 HOH HOH . D 4 HOH A 36 638 638 HOH HOH . D 4 HOH A 37 639 639 HOH HOH . D 4 HOH A 38 640 640 HOH HOH . D 4 HOH A 39 641 641 HOH HOH . D 4 HOH A 40 642 642 HOH HOH . D 4 HOH A 41 643 643 HOH HOH . D 4 HOH A 42 644 644 HOH HOH . D 4 HOH A 43 645 645 HOH HOH . D 4 HOH A 44 646 646 HOH HOH . D 4 HOH A 45 647 647 HOH HOH . D 4 HOH A 46 648 648 HOH HOH . D 4 HOH A 47 649 649 HOH HOH . D 4 HOH A 48 651 651 HOH HOH . D 4 HOH A 49 654 654 HOH HOH . D 4 HOH A 50 655 655 HOH HOH . D 4 HOH A 51 656 656 HOH HOH . D 4 HOH A 52 657 657 HOH HOH . D 4 HOH A 53 658 658 HOH HOH . D 4 HOH A 54 659 659 HOH HOH . D 4 HOH A 55 660 660 HOH HOH . D 4 HOH A 56 661 661 HOH HOH . D 4 HOH A 57 662 662 HOH HOH . D 4 HOH A 58 663 663 HOH HOH . D 4 HOH A 59 664 664 HOH HOH . D 4 HOH A 60 665 665 HOH HOH . D 4 HOH A 61 666 666 HOH HOH . D 4 HOH A 62 667 667 HOH HOH . D 4 HOH A 63 668 668 HOH HOH . D 4 HOH A 64 669 669 HOH HOH . D 4 HOH A 65 670 670 HOH HOH . D 4 HOH A 66 671 671 HOH HOH . D 4 HOH A 67 672 672 HOH HOH . D 4 HOH A 68 673 673 HOH HOH . D 4 HOH A 69 674 674 HOH HOH . D 4 HOH A 70 675 675 HOH HOH . D 4 HOH A 71 678 678 HOH HOH . D 4 HOH A 72 679 679 HOH HOH . D 4 HOH A 73 680 680 HOH HOH . D 4 HOH A 74 681 681 HOH HOH . D 4 HOH A 75 682 682 HOH HOH . D 4 HOH A 76 684 684 HOH HOH . D 4 HOH A 77 685 685 HOH HOH . D 4 HOH A 78 686 686 HOH HOH . D 4 HOH A 79 687 687 HOH HOH . D 4 HOH A 80 688 688 HOH HOH . D 4 HOH A 81 689 689 HOH HOH . D 4 HOH A 82 690 690 HOH HOH . D 4 HOH A 83 691 691 HOH HOH . D 4 HOH A 84 692 692 HOH HOH . D 4 HOH A 85 693 693 HOH HOH . D 4 HOH A 86 694 694 HOH HOH . D 4 HOH A 87 695 695 HOH HOH . D 4 HOH A 88 696 696 HOH HOH . D 4 HOH A 89 697 697 HOH HOH . D 4 HOH A 90 700 700 HOH HOH . D 4 HOH A 91 702 702 HOH HOH . D 4 HOH A 92 704 704 HOH HOH . D 4 HOH A 93 706 706 HOH HOH . D 4 HOH A 94 708 708 HOH HOH . D 4 HOH A 95 709 709 HOH HOH . D 4 HOH A 96 713 713 HOH HOH . D 4 HOH A 97 715 715 HOH HOH . D 4 HOH A 98 717 717 HOH HOH . D 4 HOH A 99 719 719 HOH HOH . D 4 HOH A 100 720 720 HOH HOH . D 4 HOH A 101 721 721 HOH HOH . D 4 HOH A 102 723 723 HOH HOH . D 4 HOH A 103 724 724 HOH HOH . D 4 HOH A 104 725 725 HOH HOH . D 4 HOH A 105 726 726 HOH HOH . D 4 HOH A 106 727 727 HOH HOH . D 4 HOH A 107 728 728 HOH HOH . D 4 HOH A 108 729 729 HOH HOH . D 4 HOH A 109 730 730 HOH HOH . D 4 HOH A 110 731 731 HOH HOH . D 4 HOH A 111 732 732 HOH HOH . D 4 HOH A 112 734 734 HOH HOH . D 4 HOH A 113 736 736 HOH HOH . D 4 HOH A 114 737 737 HOH HOH . D 4 HOH A 115 738 738 HOH HOH . D 4 HOH A 116 739 739 HOH HOH . D 4 HOH A 117 740 740 HOH HOH . D 4 HOH A 118 741 741 HOH HOH . D 4 HOH A 119 744 744 HOH HOH . D 4 HOH A 120 747 747 HOH HOH . D 4 HOH A 121 748 748 HOH HOH . D 4 HOH A 122 749 749 HOH HOH . D 4 HOH A 123 750 750 HOH HOH . D 4 HOH A 124 762 762 HOH HOH . D 4 HOH A 125 763 763 HOH HOH . D 4 HOH A 126 764 764 HOH HOH . D 4 HOH A 127 765 765 HOH HOH . D 4 HOH A 128 767 767 HOH HOH . D 4 HOH A 129 768 768 HOH HOH . D 4 HOH A 130 769 769 HOH HOH . D 4 HOH A 131 770 770 HOH HOH . D 4 HOH A 132 772 772 HOH HOH . D 4 HOH A 133 773 773 HOH HOH . D 4 HOH A 134 774 774 HOH HOH . D 4 HOH A 135 775 775 HOH HOH . D 4 HOH A 136 776 776 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -13.764 -1.91 -18.858 1 18.1 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . B 2 -11.181 1.226 -16.245 1 24.86 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . B 2 -8.936 -2.508 -14.026 1 19.02 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . B 2 -11.454 -5.692 -16.647 1 25.93 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . B 2 -13.282 -0.692 -18.335 1 23.58 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . B 2 -13.731 0.651 -18.737 1 23.04 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . B 2 -12.985 1.513 -17.992 1 22.37 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . B 2 -12.109 0.717 -17.154 1 23.79 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . B 2 -13.043 3.044 -18.024 1 25.84 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . B 2 -14.8 1.022 -19.777 1 34.36 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . B 2 -14.36 0.933 -21.266 1 23.82 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . B 2 -15.487 1.352 -22.252 1 20.85 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . B 2 -16.624 1.684 -21.818 1 26.74 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . B 2 -15.218 1.369 -23.464 1 27.77 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . B 2 -10.33 0.467 -15.42 1 23.03 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . B 2 -9.369 1.04 -14.501 1 24.42 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . B 2 -8.713 -0.023 -13.857 1 24.89 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . B 2 -9.305 -1.216 -14.406 1 23.14 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . B 2 -9.141 2.568 -14.303 1 26.76 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . B 2 -7.666 0.053 -12.863 1 26.38 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . B 2 -7.533 0.971 -11.797 1 31.73 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . B 2 -9.428 -3.712 -14.519 1 27.49 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . B 2 -8.99 -5.01 -14.049 1 21.48 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . B 2 -9.683 -5.95 -14.776 1 26.5 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . B 2 -10.548 -5.174 -15.69 1 27.85 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . B 2 -7.941 -5.26 -12.947 1 18 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . B 2 -9.568 -7.342 -14.651 1 27.96 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . B 2 -10.398 -8.114 -13.88 1 42.06 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . B 2 -12.302 -4.922 -17.507 1 20.11 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . B 2 -13.213 -5.479 -18.476 1 15.24 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . B 2 -13.869 -4.44 -19.093 1 16.1 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . B 2 -13.345 -3.224 -18.495 1 22.8 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . B 2 -13.413 -6.968 -18.76 1 15.63 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . B 2 -14.945 -4.539 -20.189 1 23.24 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . B 2 -16.351 -4.82 -19.643 1 18.61 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . B 2 -17.498 -4.726 -20.681 1 30.51 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . B 2 -18.639 -4.95 -20.285 1 30.13 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . B 2 -17.253 -4.435 -21.875 1 26.19 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . B 2 -12.305 -0.613 -17.374 1 18.24 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . B 2 -10.296 -0.913 -15.374 1 25.18 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . B 2 -10.362 -3.828 -15.496 1 17.93 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . B 2 -12.377 -3.534 -17.522 1 22.17 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . B 2 -11.554 -2.247 -16.263 1 22.52 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #