data_3A26
#
_model_server_result.job_id            vvsuWMVHHIvlYa9sx67gFQ 
_model_server_result.datetime_utc      '2025-02-28 07:16:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a26 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":279}' 
#
_entry.id    3A26 
#
_exptl.entry_id    3A26 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3A26 
_cell.length_a            132.571 
_cell.length_b            132.571 
_cell.length_c            96.669 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3A26 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 224 n n 
CS HCS1 MTA sing 225 n n 
CS HCS2 MTA sing 226 n n 
CS HCS3 MTA sing 227 n n 
S5' C5' MTA sing 228 n n 
C5' C4' MTA sing 229 n n 
C5' "H5'1" MTA sing 230 n n 
C5' "H5'2" MTA sing 231 n n 
C4' O4' MTA sing 232 n n 
C4' C3' MTA sing 233 n n 
C4' H4' MTA sing 234 n n 
O4' C1' MTA sing 235 n n 
C2' O2' MTA sing 236 n n 
C2' C3' MTA sing 237 n n 
C2' C1' MTA sing 238 n n 
C2' H2' MTA sing 239 n n 
O2' HO2' MTA sing 240 n n 
C3' O3' MTA sing 241 n n 
C3' H3' MTA sing 242 n n 
O3' H3T MTA sing 243 n n 
C1' N9 MTA sing 244 n n 
C1' H1' MTA sing 245 n n 
N9 C8 MTA sing 246 n y 
N9 C4 MTA sing 247 n y 
C8 N7 MTA doub 248 n y 
C8 H8 MTA sing 249 n n 
N7 C5 MTA sing 250 n y 
C5 C6 MTA sing 251 n y 
C5 C4 MTA doub 252 n y 
C6 N6 MTA sing 253 n n 
C6 N1 MTA doub 254 n y 
N6 H61 MTA sing 255 n n 
N6 H62 MTA sing 256 n n 
N1 C2 MTA sing 257 n y 
C2 N3 MTA doub 258 n y 
C2 H2 MTA sing 259 n n 
N3 C4 MTA sing 260 n y 
#
_atom_sites.entry_id                     3A26 
_atom_sites.fract_transf_matrix[1][1]    0.007543 
_atom_sites.fract_transf_matrix[1][2]    0.004355 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00871 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTA A 1 279 1 MTA MTA . 
C 3 PG4 A 1 280 1 PG4 PG4 . 
D 4 HOH A 1 281 1 HOH HOH . 
D 4 HOH A 2 282 2 HOH HOH . 
D 4 HOH A 3 283 3 HOH HOH . 
D 4 HOH A 4 284 4 HOH HOH . 
D 4 HOH A 5 285 5 HOH HOH . 
D 4 HOH A 6 286 6 HOH HOH . 
D 4 HOH A 7 287 7 HOH HOH . 
D 4 HOH A 8 288 8 HOH HOH . 
D 4 HOH A 9 289 9 HOH HOH . 
D 4 HOH A 10 290 10 HOH HOH . 
D 4 HOH A 11 291 11 HOH HOH . 
D 4 HOH A 12 292 12 HOH HOH . 
D 4 HOH A 13 293 13 HOH HOH . 
D 4 HOH A 14 294 14 HOH HOH . 
D 4 HOH A 15 295 15 HOH HOH . 
D 4 HOH A 16 296 16 HOH HOH . 
D 4 HOH A 17 297 17 HOH HOH . 
D 4 HOH A 18 298 18 HOH HOH . 
D 4 HOH A 19 299 19 HOH HOH . 
D 4 HOH A 20 300 20 HOH HOH . 
D 4 HOH A 21 301 21 HOH HOH . 
D 4 HOH A 22 302 22 HOH HOH . 
D 4 HOH A 23 303 23 HOH HOH . 
D 4 HOH A 24 304 24 HOH HOH . 
D 4 HOH A 25 305 25 HOH HOH . 
D 4 HOH A 26 306 26 HOH HOH . 
D 4 HOH A 27 307 27 HOH HOH . 
D 4 HOH A 28 308 28 HOH HOH . 
D 4 HOH A 29 309 29 HOH HOH . 
D 4 HOH A 30 310 30 HOH HOH . 
D 4 HOH A 31 311 31 HOH HOH . 
D 4 HOH A 32 312 32 HOH HOH . 
D 4 HOH A 33 313 33 HOH HOH . 
D 4 HOH A 34 314 34 HOH HOH . 
D 4 HOH A 35 315 35 HOH HOH . 
D 4 HOH A 36 316 36 HOH HOH . 
D 4 HOH A 37 317 37 HOH HOH . 
D 4 HOH A 38 318 38 HOH HOH . 
D 4 HOH A 39 319 39 HOH HOH . 
D 4 HOH A 40 320 40 HOH HOH . 
D 4 HOH A 41 321 41 HOH HOH . 
D 4 HOH A 42 322 42 HOH HOH . 
D 4 HOH A 43 323 43 HOH HOH . 
D 4 HOH A 44 324 44 HOH HOH . 
D 4 HOH A 45 325 45 HOH HOH . 
D 4 HOH A 46 326 46 HOH HOH . 
D 4 HOH A 47 327 47 HOH HOH . 
D 4 HOH A 48 328 48 HOH HOH . 
D 4 HOH A 49 329 49 HOH HOH . 
D 4 HOH A 50 330 50 HOH HOH . 
D 4 HOH A 51 331 51 HOH HOH . 
D 4 HOH A 52 332 52 HOH HOH . 
D 4 HOH A 53 333 53 HOH HOH . 
D 4 HOH A 54 334 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . B 2 -3.563 -27.059 -39.374 1 74.85 ? CS MTA 279 A 1 
HETATM 2 S S5' MTA . . . B 2 -4.525 -28.658 -39.396 1 69.45 ? S5' MTA 279 A 1 
HETATM 3 C C5' MTA . . . B 2 -3.467 -30.126 -39.107 1 56.16 ? C5' MTA 279 A 1 
HETATM 4 C C4' MTA . . . B 2 -2.256 -29.805 -38.208 1 59.42 ? C4' MTA 279 A 1 
HETATM 5 O O4' MTA . . . B 2 -1.666 -30.833 -37.365 1 57.72 ? O4' MTA 279 A 1 
HETATM 6 C C2' MTA . . . B 2 0.13 -30.078 -38.731 1 56.7 ? C2' MTA 279 A 1 
HETATM 7 O O2' MTA . . . B 2 1.449 -29.579 -38.818 1 55.66 ? O2' MTA 279 A 1 
HETATM 8 C C3' MTA . . . B 2 -0.989 -29.022 -38.832 1 57.88 ? C3' MTA 279 A 1 
HETATM 9 O O3' MTA . . . B 2 -0.695 -27.732 -38.363 1 50.22 ? O3' MTA 279 A 1 
HETATM 10 C C1' MTA . . . B 2 -0.264 -30.765 -37.486 1 58.37 ? C1' MTA 279 A 1 
HETATM 11 N N9 MTA . . . B 2 0.264 -32.147 -37.395 1 55.2 ? N9 MTA 279 A 1 
HETATM 12 C C8 MTA . . . B 2 0.352 -33.076 -38.32 1 57.55 ? C8 MTA 279 A 1 
HETATM 13 N N7 MTA . . . B 2 0.902 -34.263 -37.692 1 56.59 ? N7 MTA 279 A 1 
HETATM 14 C C5 MTA . . . B 2 1.126 -33.964 -36.32 1 58.62 ? C5 MTA 279 A 1 
HETATM 15 C C6 MTA . . . B 2 1.658 -34.768 -35.215 1 57.19 ? C6 MTA 279 A 1 
HETATM 16 N N6 MTA . . . B 2 2.053 -36.114 -35.474 1 58.06 ? N6 MTA 279 A 1 
HETATM 17 N N1 MTA . . . B 2 1.769 -34.231 -33.952 1 57.34 ? N1 MTA 279 A 1 
HETATM 18 C C2 MTA . . . B 2 1.372 -32.893 -33.717 1 55.48 ? C2 MTA 279 A 1 
HETATM 19 N N3 MTA . . . B 2 0.871 -32.126 -34.763 1 53.9 ? N3 MTA 279 A 1 
HETATM 20 C C4 MTA . . . B 2 0.751 -32.71 -36.096 1 54.22 ? C4 MTA 279 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#