data_3A27 # _model_server_result.job_id D7DaiQn2Ih8foahMKaE9yA _model_server_result.datetime_utc '2024-12-26 15:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":250}' # _entry.id 3A27 # _exptl.entry_id 3A27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A27 _cell.length_a 40.584 _cell.length_b 67.827 _cell.length_c 113.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 3A27 _atom_sites.fract_transf_matrix[1][1] 0.02464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 250 1 SAM SAM . C 3 HOH A 1 251 1 HOH HOH . C 3 HOH A 2 252 2 HOH HOH . C 3 HOH A 3 253 3 HOH HOH . C 3 HOH A 4 254 4 HOH HOH . C 3 HOH A 5 255 5 HOH HOH . C 3 HOH A 6 256 6 HOH HOH . C 3 HOH A 7 257 7 HOH HOH . C 3 HOH A 8 258 8 HOH HOH . C 3 HOH A 9 259 9 HOH HOH . C 3 HOH A 10 260 10 HOH HOH . C 3 HOH A 11 261 11 HOH HOH . C 3 HOH A 12 262 12 HOH HOH . C 3 HOH A 13 263 13 HOH HOH . C 3 HOH A 14 264 14 HOH HOH . C 3 HOH A 15 265 15 HOH HOH . C 3 HOH A 16 266 16 HOH HOH . C 3 HOH A 17 267 17 HOH HOH . C 3 HOH A 18 268 18 HOH HOH . C 3 HOH A 19 269 19 HOH HOH . C 3 HOH A 20 270 20 HOH HOH . C 3 HOH A 21 271 21 HOH HOH . C 3 HOH A 22 272 22 HOH HOH . C 3 HOH A 23 273 23 HOH HOH . C 3 HOH A 24 274 24 HOH HOH . C 3 HOH A 25 275 25 HOH HOH . C 3 HOH A 26 276 26 HOH HOH . C 3 HOH A 27 277 27 HOH HOH . C 3 HOH A 28 278 28 HOH HOH . C 3 HOH A 29 279 29 HOH HOH . C 3 HOH A 30 280 30 HOH HOH . C 3 HOH A 31 281 31 HOH HOH . C 3 HOH A 32 282 32 HOH HOH . C 3 HOH A 33 283 33 HOH HOH . C 3 HOH A 34 284 34 HOH HOH . C 3 HOH A 35 285 35 HOH HOH . C 3 HOH A 36 286 36 HOH HOH . C 3 HOH A 37 287 37 HOH HOH . C 3 HOH A 38 288 38 HOH HOH . C 3 HOH A 39 289 39 HOH HOH . C 3 HOH A 40 290 40 HOH HOH . C 3 HOH A 41 291 41 HOH HOH . C 3 HOH A 42 292 42 HOH HOH . C 3 HOH A 43 293 43 HOH HOH . C 3 HOH A 44 294 44 HOH HOH . C 3 HOH A 45 295 45 HOH HOH . C 3 HOH A 46 296 46 HOH HOH . C 3 HOH A 47 297 47 HOH HOH . C 3 HOH A 48 298 48 HOH HOH . C 3 HOH A 49 299 49 HOH HOH . C 3 HOH A 50 300 50 HOH HOH . C 3 HOH A 51 301 51 HOH HOH . C 3 HOH A 52 302 52 HOH HOH . C 3 HOH A 53 303 53 HOH HOH . C 3 HOH A 54 304 54 HOH HOH . C 3 HOH A 55 305 55 HOH HOH . C 3 HOH A 56 306 56 HOH HOH . C 3 HOH A 57 307 57 HOH HOH . C 3 HOH A 58 308 58 HOH HOH . C 3 HOH A 59 309 59 HOH HOH . C 3 HOH A 60 310 60 HOH HOH . C 3 HOH A 61 311 61 HOH HOH . C 3 HOH A 62 312 62 HOH HOH . C 3 HOH A 63 313 63 HOH HOH . C 3 HOH A 64 314 64 HOH HOH . C 3 HOH A 65 315 65 HOH HOH . C 3 HOH A 66 316 66 HOH HOH . C 3 HOH A 67 317 67 HOH HOH . C 3 HOH A 68 318 68 HOH HOH . C 3 HOH A 69 319 69 HOH HOH . C 3 HOH A 70 320 70 HOH HOH . C 3 HOH A 71 321 71 HOH HOH . C 3 HOH A 72 322 72 HOH HOH . C 3 HOH A 73 323 73 HOH HOH . C 3 HOH A 74 324 74 HOH HOH . C 3 HOH A 75 325 75 HOH HOH . C 3 HOH A 76 326 76 HOH HOH . C 3 HOH A 77 327 77 HOH HOH . C 3 HOH A 78 328 78 HOH HOH . C 3 HOH A 79 329 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 -8.962 -10.038 -17.349 1 118.29 ? N SAM 250 A 1 HETATM 2 C CA SAM . . . B 2 -8.497 -9.305 -18.522 1 121.03 ? CA SAM 250 A 1 HETATM 3 C C SAM . . . B 2 -8.898 -7.83 -18.453 1 127.56 ? C SAM 250 A 1 HETATM 4 O O SAM . . . B 2 -9.623 -7.413 -17.548 1 133.74 ? O SAM 250 A 1 HETATM 5 O OXT SAM . . . B 2 -8.499 -7.018 -19.29 1 126.33 ? OXT SAM 250 A 1 HETATM 6 C CB SAM . . . B 2 -8.962 -9.973 -19.818 1 122.03 ? CB SAM 250 A 1 HETATM 7 C CG SAM . . . B 2 -9.882 -11.189 -19.676 1 125.29 ? CG SAM 250 A 1 HETATM 8 S SD SAM . . . B 2 -10.838 -11.48 -21.19 1 82.08 ? SD SAM 250 A 1 HETATM 9 C CE SAM . . . B 2 -12.51 -11.124 -20.6 1 129.7 ? CE SAM 250 A 1 HETATM 10 C C5' SAM . . . B 2 -10.926 -13.276 -21.462 1 52.13 ? C5' SAM 250 A 1 HETATM 11 C C4' SAM . . . B 2 -12.214 -13.644 -22.217 1 45.82 ? C4' SAM 250 A 1 HETATM 12 O O4' SAM . . . B 2 -12.001 -14.551 -23.281 1 41.41 ? O4' SAM 250 A 1 HETATM 13 C C3' SAM . . . B 2 -13.301 -14.265 -21.347 1 46.21 ? C3' SAM 250 A 1 HETATM 14 O O3' SAM . . . B 2 -14.417 -13.409 -21.392 1 45.18 ? O3' SAM 250 A 1 HETATM 15 C C2' SAM . . . B 2 -13.675 -15.569 -22.022 1 43.78 ? C2' SAM 250 A 1 HETATM 16 O O2' SAM . . . B 2 -15.071 -15.758 -22.016 1 47.4 ? O2' SAM 250 A 1 HETATM 17 C C1' SAM . . . B 2 -13.151 -15.374 -23.434 1 45.02 ? C1' SAM 250 A 1 HETATM 18 N N9 SAM . . . B 2 -12.783 -16.632 -24.113 1 38.12 ? N9 SAM 250 A 1 HETATM 19 C C8 SAM . . . B 2 -12.225 -17.742 -23.538 1 33.86 ? C8 SAM 250 A 1 HETATM 20 N N7 SAM . . . B 2 -12.022 -18.674 -24.504 1 38.83 ? N7 SAM 250 A 1 HETATM 21 C C5 SAM . . . B 2 -12.438 -18.164 -25.687 1 31.4 ? C5 SAM 250 A 1 HETATM 22 C C6 SAM . . . B 2 -12.454 -18.687 -26.971 1 31.73 ? C6 SAM 250 A 1 HETATM 23 N N6 SAM . . . B 2 -12.001 -19.919 -27.191 1 35.06 ? N6 SAM 250 A 1 HETATM 24 N N1 SAM . . . B 2 -12.947 -17.925 -28.012 1 27.63 ? N1 SAM 250 A 1 HETATM 25 C C2 SAM . . . B 2 -13.427 -16.644 -27.775 1 32.2 ? C2 SAM 250 A 1 HETATM 26 N N3 SAM . . . B 2 -13.409 -16.132 -26.489 1 29.42 ? N3 SAM 250 A 1 HETATM 27 C C4 SAM . . . B 2 -12.924 -16.882 -25.46 1 28.16 ? C4 SAM 250 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #