data_3A2C
#
_model_server_result.job_id            e32p604QhBUqJgkl1Sm8nw 
_model_server_result.datetime_utc      '2024-11-22 06:33:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3a2c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":2}' 
#
_entry.id    3A2C 
#
_exptl.entry_id    3A2C 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              366.46 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~7~-(4-ethoxyphenyl)-6-methyl-N~5~-[(3S)-piperidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine 
_entity.pdbx_number_of_molecules    24 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3A2C 
_cell.length_a            139.157 
_cell.length_b            180.956 
_cell.length_c            216.096 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3A2C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
#
_chem_comp.formula           'C20 H26 N6 O' 
_chem_comp.formula_weight    366.46 
_chem_comp.id                PDY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~7~-(4-ethoxyphenyl)-6-methyl-N~5~-[(3S)-piperidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     {5-[((3S)(3-piperidyl))amino]-6-methyl(pyrazolo[1,5-a]pyrimidin-7-yl)}(4-ethoxyphenyl)amine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C26 PDY sing 235 n n 
C25 C15 PDY sing 236 n n 
C26 C23 PDY sing 237 n n 
C23 N12 PDY sing 238 n n 
N12 C22 PDY sing 239 n n 
C22 C15 PDY sing 240 n n 
C15 N10 PDY sing 241 n n 
N10 C4 PDY sing 242 n n 
C4 C3 PDY sing 243 n y 
C4 N6 PDY doub 244 n y 
C3 C14 PDY sing 245 n n 
C3 C1 PDY doub 246 n y 
N6 C5 PDY sing 247 n y 
C5 C8 PDY doub 248 n y 
C5 N2 PDY sing 249 n y 
C8 C11 PDY sing 250 n y 
C11 N7 PDY doub 251 n y 
N7 N2 PDY sing 252 n y 
N2 C1 PDY sing 253 n y 
C1 N9 PDY sing 254 n n 
N9 C13 PDY sing 255 n n 
C13 C17 PDY doub 256 n y 
C13 C18 PDY sing 257 n y 
C17 C20 PDY sing 258 n y 
C20 C16 PDY doub 259 n y 
C18 C19 PDY doub 260 n y 
C19 C16 PDY sing 261 n y 
C16 O21 PDY sing 262 n n 
O21 C24 PDY sing 263 n n 
C24 C27 PDY sing 264 n n 
C25 H25 PDY sing 265 n n 
C25 H25A PDY sing 266 n n 
C26 H26 PDY sing 267 n n 
C26 H26A PDY sing 268 n n 
C23 H23 PDY sing 269 n n 
C23 H23A PDY sing 270 n n 
N12 HN12 PDY sing 271 n n 
C22 H22 PDY sing 272 n n 
C22 H22A PDY sing 273 n n 
C15 H15 PDY sing 274 n n 
N10 HN10 PDY sing 275 n n 
C14 H14 PDY sing 276 n n 
C14 H14A PDY sing 277 n n 
C14 H14B PDY sing 278 n n 
C8 H8 PDY sing 279 n n 
C11 H11 PDY sing 280 n n 
N9 HN9 PDY sing 281 n n 
C17 H17 PDY sing 282 n n 
C20 H20 PDY sing 283 n n 
C18 H18 PDY sing 284 n n 
C19 H19 PDY sing 285 n n 
C24 H24 PDY sing 286 n n 
C24 H24A PDY sing 287 n n 
C27 H27 PDY sing 288 n n 
C27 H27A PDY sing 289 n n 
C27 H27B PDY sing 290 n n 
#
_atom_sites.entry_id                     3A2C 
_atom_sites.fract_transf_matrix[1][1]    0.007186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005526 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 PDY A 1 1 1 PDY LIG . 
N 2 PDY A 1 2 2 PDY LIG . 
O 2 PDY B 1 1 1 PDY LIG . 
P 2 PDY B 1 2 2 PDY LIG . 
Q 2 PDY C 1 1 1 PDY LIG . 
R 2 PDY C 1 2 2 PDY LIG . 
S 2 PDY D 1 1 1 PDY LIG . 
T 2 PDY D 1 2 2 PDY LIG . 
U 2 PDY E 1 1 1 PDY LIG . 
V 2 PDY E 1 2 2 PDY LIG . 
W 2 PDY F 1 1 1 PDY LIG . 
X 2 PDY F 1 2 2 PDY LIG . 
Y 3 SO4 F 1 3 3 SO4 SO4 . 
Z 2 PDY G 1 1 1 PDY LIG . 
AA 2 PDY G 1 2 2 PDY LIG . 
BA 2 PDY H 1 1 1 PDY LIG . 
CA 2 PDY H 1 2 2 PDY LIG . 
DA 2 PDY I 1 1 1 PDY LIG . 
EA 2 PDY I 1 2 2 PDY LIG . 
FA 2 PDY J 1 1 1 PDY LIG . 
GA 2 PDY J 1 2 2 PDY LIG . 
HA 2 PDY K 1 1 1 PDY LIG . 
IA 2 PDY K 1 2 2 PDY LIG . 
JA 2 PDY L 1 1 1 PDY LIG . 
KA 2 PDY L 1 2 2 PDY LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C25 PDY . . . CA 2 101.828 89.734 75.309 1 59.65 ? C25 PDY 2 H 1 
HETATM 2 C C26 PDY . . . CA 2 100.832 88.64 75.701 1 59.5 ? C26 PDY 2 H 1 
HETATM 3 C C23 PDY . . . CA 2 101.418 87.767 76.815 1 60.05 ? C23 PDY 2 H 1 
HETATM 4 N N12 PDY . . . CA 2 101.843 88.588 77.961 1 60.71 ? N12 PDY 2 H 1 
HETATM 5 C C22 PDY . . . CA 2 102.823 89.614 77.555 1 60.68 ? C22 PDY 2 H 1 
HETATM 6 C C15 PDY . . . CA 2 102.2 90.573 76.532 1 59.48 ? C15 PDY 2 H 1 
HETATM 7 N N10 PDY . . . CA 2 103.083 91.692 76.145 1 58.73 ? N10 PDY 2 H 1 
HETATM 8 C C4 PDY . . . CA 2 102.603 92.928 76.182 1 55.85 ? C4 PDY 2 H 1 
HETATM 9 C C3 PDY . . . CA 2 103.343 94.064 75.882 1 54.37 ? C3 PDY 2 H 1 
HETATM 10 C C14 PDY . . . CA 2 104.759 93.89 75.333 1 52.9 ? C14 PDY 2 H 1 
HETATM 11 N N6 PDY . . . CA 2 101.315 92.982 76.558 1 54.92 ? N6 PDY 2 H 1 
HETATM 12 C C5 PDY . . . CA 2 100.663 94.139 76.695 1 55.24 ? C5 PDY 2 H 1 
HETATM 13 C C8 PDY . . . CA 2 99.407 94.432 77.027 1 54.8 ? C8 PDY 2 H 1 
HETATM 14 C C11 PDY . . . CA 2 99.257 95.946 76.876 1 55.22 ? C11 PDY 2 H 1 
HETATM 15 N N7 PDY . . . CA 2 100.582 96.337 76.37 1 54.81 ? N7 PDY 2 H 1 
HETATM 16 N N2 PDY . . . CA 2 101.292 95.334 76.319 1 54.73 ? N2 PDY 2 H 1 
HETATM 17 C C1 PDY . . . CA 2 102.621 95.251 75.877 1 54.51 ? C1 PDY 2 H 1 
HETATM 18 N N9 PDY . . . CA 2 102.902 96.326 75.151 1 55.87 ? N9 PDY 2 H 1 
HETATM 19 C C13 PDY . . . CA 2 103.846 96.713 74.294 1 57.82 ? C13 PDY 2 H 1 
HETATM 20 C C17 PDY . . . CA 2 103.292 97.577 73.357 1 59.43 ? C17 PDY 2 H 1 
HETATM 21 C C20 PDY . . . CA 2 103.88 97.67 72.116 1 58.82 ? C20 PDY 2 H 1 
HETATM 22 C C18 PDY . . . CA 2 105.049 96.108 73.976 1 58.09 ? C18 PDY 2 H 1 
HETATM 23 C C19 PDY . . . CA 2 105.619 96.235 72.7 1 58.25 ? C19 PDY 2 H 1 
HETATM 24 C C16 PDY . . . CA 2 104.999 96.975 71.693 1 57.95 ? C16 PDY 2 H 1 
HETATM 25 O O21 PDY . . . CA 2 105.46 97.251 70.443 1 57.08 ? O21 PDY 2 H 1 
HETATM 26 C C24 PDY . . . CA 2 106.769 96.71 70.257 1 55.87 ? C24 PDY 2 H 1 
HETATM 27 C C27 PDY . . . CA 2 107.188 97.119 68.845 1 53.91 ? C27 PDY 2 H 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#