data_3A2G # _model_server_result.job_id jhco7lXlw8R4Wn_unOhvPA _model_server_result.datetime_utc '2024-11-23 11:01:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 3A2G # _exptl.entry_id 3A2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A2G _cell.length_a 90.409 _cell.length_b 90.409 _cell.length_c 45.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 103 A CYS 102 1_555 G C1 LCY . A LCY 200 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.776 ? covale ? covale2 A SG CYS 103 A CYS 102 1_555 G C1 LCY . A LCY 200 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.781 ? metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 H O HOH . A HOH 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 3A2G _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] 0.006386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 SO4 A 1 155 1 SO4 SO4 . D 3 SO4 A 1 156 2 SO4 SO4 . E 3 SO4 A 1 157 3 SO4 SO4 . F 4 GOL A 1 158 1 GOL GOL . G 5 LCY A 1 200 102 LCY LCY . H 6 HOH A 1 159 1 HOH HOH . H 6 HOH A 2 160 2 HOH HOH . H 6 HOH A 3 161 3 HOH HOH . H 6 HOH A 4 162 4 HOH HOH . H 6 HOH A 5 163 5 HOH HOH . H 6 HOH A 6 164 6 HOH HOH . H 6 HOH A 7 165 7 HOH HOH . H 6 HOH A 8 166 8 HOH HOH . H 6 HOH A 9 167 9 HOH HOH . H 6 HOH A 10 168 10 HOH HOH . H 6 HOH A 11 169 11 HOH HOH . H 6 HOH A 12 170 12 HOH HOH . H 6 HOH A 13 171 13 HOH HOH . H 6 HOH A 14 172 14 HOH HOH . H 6 HOH A 15 173 15 HOH HOH . H 6 HOH A 16 174 16 HOH HOH . H 6 HOH A 17 175 17 HOH HOH . H 6 HOH A 18 176 18 HOH HOH . H 6 HOH A 19 177 19 HOH HOH . H 6 HOH A 20 178 20 HOH HOH . H 6 HOH A 21 179 21 HOH HOH . H 6 HOH A 22 180 22 HOH HOH . H 6 HOH A 23 181 23 HOH HOH . H 6 HOH A 24 182 24 HOH HOH . H 6 HOH A 25 183 25 HOH HOH . H 6 HOH A 26 184 26 HOH HOH . H 6 HOH A 27 185 27 HOH HOH . H 6 HOH A 28 186 28 HOH HOH . H 6 HOH A 29 187 29 HOH HOH . H 6 HOH A 30 188 30 HOH HOH . H 6 HOH A 31 189 31 HOH HOH . H 6 HOH A 32 190 32 HOH HOH . H 6 HOH A 33 191 33 HOH HOH . H 6 HOH A 34 192 34 HOH HOH . H 6 HOH A 35 193 35 HOH HOH . H 6 HOH A 36 194 36 HOH HOH . H 6 HOH A 37 195 37 HOH HOH . H 6 HOH A 38 196 38 HOH HOH . H 6 HOH A 39 197 39 HOH HOH . H 6 HOH A 40 198 40 HOH HOH . H 6 HOH A 41 199 41 HOH HOH . H 6 HOH A 42 201 42 HOH HOH . H 6 HOH A 43 202 43 HOH HOH . H 6 HOH A 44 203 44 HOH HOH . H 6 HOH A 45 204 45 HOH HOH . H 6 HOH A 46 205 46 HOH HOH . H 6 HOH A 47 206 47 HOH HOH . H 6 HOH A 48 207 48 HOH HOH . H 6 HOH A 49 208 49 HOH HOH . H 6 HOH A 50 209 50 HOH HOH . H 6 HOH A 51 210 51 HOH HOH . H 6 HOH A 52 211 52 HOH HOH . H 6 HOH A 53 212 53 HOH HOH . H 6 HOH A 54 213 54 HOH HOH . H 6 HOH A 55 214 55 HOH HOH . H 6 HOH A 56 215 56 HOH HOH . H 6 HOH A 57 216 57 HOH HOH . H 6 HOH A 58 217 58 HOH HOH . H 6 HOH A 59 218 59 HOH HOH . H 6 HOH A 60 219 60 HOH HOH . H 6 HOH A 61 220 61 HOH HOH . H 6 HOH A 62 221 62 HOH HOH . H 6 HOH A 63 222 63 HOH HOH . H 6 HOH A 64 223 64 HOH HOH . H 6 HOH A 65 224 65 HOH HOH . H 6 HOH A 66 225 66 HOH HOH . H 6 HOH A 67 226 67 HOH HOH . H 6 HOH A 68 227 68 HOH HOH . H 6 HOH A 69 228 69 HOH HOH . H 6 HOH A 70 229 70 HOH HOH . H 6 HOH A 71 230 71 HOH HOH . H 6 HOH A 72 231 72 HOH HOH . H 6 HOH A 73 232 73 HOH HOH . H 6 HOH A 74 233 74 HOH HOH . H 6 HOH A 75 234 75 HOH HOH . H 6 HOH A 76 235 76 HOH HOH . H 6 HOH A 77 236 77 HOH HOH . H 6 HOH A 78 237 78 HOH HOH . H 6 HOH A 79 238 79 HOH HOH . H 6 HOH A 80 239 80 HOH HOH . H 6 HOH A 81 240 81 HOH HOH . H 6 HOH A 82 241 82 HOH HOH . H 6 HOH A 83 242 83 HOH HOH . H 6 HOH A 84 243 84 HOH HOH . H 6 HOH A 85 244 85 HOH HOH . H 6 HOH A 86 245 86 HOH HOH . H 6 HOH A 87 246 87 HOH HOH . H 6 HOH A 88 247 88 HOH HOH . H 6 HOH A 89 248 89 HOH HOH . H 6 HOH A 90 249 90 HOH HOH . H 6 HOH A 91 250 91 HOH HOH . H 6 HOH A 92 251 92 HOH HOH . H 6 HOH A 93 252 93 HOH HOH . H 6 HOH A 94 253 94 HOH HOH . H 6 HOH A 95 254 95 HOH HOH . H 6 HOH A 96 255 96 HOH HOH . H 6 HOH A 97 256 97 HOH HOH . H 6 HOH A 98 257 98 HOH HOH . H 6 HOH A 99 258 99 HOH HOH . H 6 HOH A 100 259 100 HOH HOH . H 6 HOH A 101 260 101 HOH HOH . H 6 HOH A 102 261 102 HOH HOH . H 6 HOH A 103 262 103 HOH HOH . H 6 HOH A 104 263 104 HOH HOH . H 6 HOH A 105 264 105 HOH HOH . H 6 HOH A 106 265 106 HOH HOH . H 6 HOH A 107 266 107 HOH HOH . H 6 HOH A 108 267 108 HOH HOH . H 6 HOH A 109 268 109 HOH HOH . H 6 HOH A 110 269 110 HOH HOH . H 6 HOH A 111 270 111 HOH HOH . H 6 HOH A 112 271 112 HOH HOH . H 6 HOH A 113 272 113 HOH HOH . H 6 HOH A 114 273 114 HOH HOH . H 6 HOH A 115 274 115 HOH HOH . H 6 HOH A 116 275 116 HOH HOH . H 6 HOH A 117 276 117 HOH HOH . H 6 HOH A 118 277 118 HOH HOH . H 6 HOH A 119 278 119 HOH HOH . H 6 HOH A 120 279 120 HOH HOH . H 6 HOH A 121 280 121 HOH HOH . H 6 HOH A 122 281 122 HOH HOH . H 6 HOH A 123 282 123 HOH HOH . H 6 HOH A 124 283 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 17.066 33.557 3.791 1 8.82 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . B 2 13.996 34.563 0.195 1 8.6 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . B 2 11.122 30.935 1.612 1 8.15 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . B 2 14.108 29.994 5.299 1 8.54 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . B 2 16.506 34.135 2.671 1 8.29 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . B 2 17.074 35.21 1.885 1 8.47 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . B 2 16.215 35.483 0.887 1 8 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . B 2 15.09 34.593 1.022 1 7.7 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . B 2 16.366 36.529 -0.24 1 7.51 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . B 2 18.449 35.86 2.162 1 9.53 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . B 2 19.514 35.32 1.193 1 10.4 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . B 2 19.583 33.8 1.169 1 11.17 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . B 2 19.998 33.215 2.205 1 12.92 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . B 2 19.231 33.193 0.112 1 13.66 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . B 2 12.969 33.649 0.244 1 8.91 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . B 2 11.879 33.538 -0.712 1 9.46 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . B 2 11.082 32.542 -0.309 1 8.1 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . B 2 11.652 31.985 0.908 1 7.79 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . B 2 11.711 34.449 -1.96 1 8.85 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . B 2 9.792 32.019 -0.976 1 9 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . B 2 8.841 32.87 -1.377 1 11.88 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . B 2 11.644 30.424 2.779 1 8.55 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . B 2 10.964 29.519 3.675 1 8.26 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . B 2 11.789 29.268 4.701 1 9.41 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . B 2 13.009 30.019 4.47 1 8.04 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . B 2 9.54 28.982 3.424 1 9.42 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . B 2 11.581 28.374 5.952 1 8.81 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . B 2 10.482 27.631 6.155 1 11.47 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . B 2 15.153 30.873 5.253 1 10.38 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . B 2 16.17 30.975 6.262 1 11.17 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . B 2 17.072 32.093 5.795 1 10.08 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . B 2 16.52 32.556 4.547 1 9.89 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . B 2 16.314 30.156 7.564 1 12.22 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . B 2 18.3 32.662 6.514 1 9.86 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . B 2 17.695 33.644 7.528 1 15.44 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . B 2 18.83 34.225 8.327 1 18.14 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . B 2 19.278 33.538 9.289 1 21.06 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . B 2 19.293 35.342 7.984 1 16.83 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . B 2 15.294 33.786 2.125 1 9.17 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . B 2 12.804 32.679 1.208 1 8.95 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . B 2 12.899 30.72 3.286 1 8.02 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . B 2 15.39 31.807 4.249 1 9.68 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . B 2 14.147 32.193 2.681 1 9.31 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #