data_3A2G # _model_server_result.job_id hU3Na-yEdfbsvFDQrwgceg _model_server_result.datetime_utc '2024-11-12 19:41:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":200}' # _entry.id 3A2G # _exptl.entry_id 3A2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 113.115 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methylpyrrolidine-2,5-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A2G _cell.length_a 90.409 _cell.length_b 90.409 _cell.length_c 45.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 103 A CYS 102 1_555 G C1 LCY . A LCY 200 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.776 ? covale ? covale2 A SG CYS 103 A CYS 102 1_555 G C1 LCY . A LCY 200 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.781 ? metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 B FE HEM . A HEM 154 1_555 H O HOH . A HOH 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C5 H7 N O2' _chem_comp.formula_weight 113.115 _chem_comp.id LCY _chem_comp.mon_nstd_flag . _chem_comp.name 1-methylpyrrolidine-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LCY sing 268 n n C1 C4 LCY sing 269 n n C2 C3 LCY sing 270 n n C3 O2 LCY doub 271 n n C3 N1 LCY sing 272 n n N1 C4 LCY sing 273 n n N1 C5 LCY sing 274 n n C4 O1 LCY doub 275 n n C1 H1 LCY sing 276 n n C1 H1A LCY sing 277 n n C2 H2 LCY sing 278 n n C2 H2A LCY sing 279 n n C5 H5 LCY sing 280 n n C5 H5A LCY sing 281 n n C5 H5B LCY sing 282 n n # _atom_sites.entry_id 3A2G _atom_sites.fract_transf_matrix[1][1] 0.011061 _atom_sites.fract_transf_matrix[1][2] 0.006386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 SO4 A 1 155 1 SO4 SO4 . D 3 SO4 A 1 156 2 SO4 SO4 . E 3 SO4 A 1 157 3 SO4 SO4 . F 4 GOL A 1 158 1 GOL GOL . G 5 LCY A 1 200 102 LCY LCY . H 6 HOH A 1 159 1 HOH HOH . H 6 HOH A 2 160 2 HOH HOH . H 6 HOH A 3 161 3 HOH HOH . H 6 HOH A 4 162 4 HOH HOH . H 6 HOH A 5 163 5 HOH HOH . H 6 HOH A 6 164 6 HOH HOH . H 6 HOH A 7 165 7 HOH HOH . H 6 HOH A 8 166 8 HOH HOH . H 6 HOH A 9 167 9 HOH HOH . H 6 HOH A 10 168 10 HOH HOH . H 6 HOH A 11 169 11 HOH HOH . H 6 HOH A 12 170 12 HOH HOH . H 6 HOH A 13 171 13 HOH HOH . H 6 HOH A 14 172 14 HOH HOH . H 6 HOH A 15 173 15 HOH HOH . H 6 HOH A 16 174 16 HOH HOH . H 6 HOH A 17 175 17 HOH HOH . H 6 HOH A 18 176 18 HOH HOH . H 6 HOH A 19 177 19 HOH HOH . H 6 HOH A 20 178 20 HOH HOH . H 6 HOH A 21 179 21 HOH HOH . H 6 HOH A 22 180 22 HOH HOH . H 6 HOH A 23 181 23 HOH HOH . H 6 HOH A 24 182 24 HOH HOH . H 6 HOH A 25 183 25 HOH HOH . H 6 HOH A 26 184 26 HOH HOH . H 6 HOH A 27 185 27 HOH HOH . H 6 HOH A 28 186 28 HOH HOH . H 6 HOH A 29 187 29 HOH HOH . H 6 HOH A 30 188 30 HOH HOH . H 6 HOH A 31 189 31 HOH HOH . H 6 HOH A 32 190 32 HOH HOH . H 6 HOH A 33 191 33 HOH HOH . H 6 HOH A 34 192 34 HOH HOH . H 6 HOH A 35 193 35 HOH HOH . H 6 HOH A 36 194 36 HOH HOH . H 6 HOH A 37 195 37 HOH HOH . H 6 HOH A 38 196 38 HOH HOH . H 6 HOH A 39 197 39 HOH HOH . H 6 HOH A 40 198 40 HOH HOH . H 6 HOH A 41 199 41 HOH HOH . H 6 HOH A 42 201 42 HOH HOH . H 6 HOH A 43 202 43 HOH HOH . H 6 HOH A 44 203 44 HOH HOH . H 6 HOH A 45 204 45 HOH HOH . H 6 HOH A 46 205 46 HOH HOH . H 6 HOH A 47 206 47 HOH HOH . H 6 HOH A 48 207 48 HOH HOH . H 6 HOH A 49 208 49 HOH HOH . H 6 HOH A 50 209 50 HOH HOH . H 6 HOH A 51 210 51 HOH HOH . H 6 HOH A 52 211 52 HOH HOH . H 6 HOH A 53 212 53 HOH HOH . H 6 HOH A 54 213 54 HOH HOH . H 6 HOH A 55 214 55 HOH HOH . H 6 HOH A 56 215 56 HOH HOH . H 6 HOH A 57 216 57 HOH HOH . H 6 HOH A 58 217 58 HOH HOH . H 6 HOH A 59 218 59 HOH HOH . H 6 HOH A 60 219 60 HOH HOH . H 6 HOH A 61 220 61 HOH HOH . H 6 HOH A 62 221 62 HOH HOH . H 6 HOH A 63 222 63 HOH HOH . H 6 HOH A 64 223 64 HOH HOH . H 6 HOH A 65 224 65 HOH HOH . H 6 HOH A 66 225 66 HOH HOH . H 6 HOH A 67 226 67 HOH HOH . H 6 HOH A 68 227 68 HOH HOH . H 6 HOH A 69 228 69 HOH HOH . H 6 HOH A 70 229 70 HOH HOH . H 6 HOH A 71 230 71 HOH HOH . H 6 HOH A 72 231 72 HOH HOH . H 6 HOH A 73 232 73 HOH HOH . H 6 HOH A 74 233 74 HOH HOH . H 6 HOH A 75 234 75 HOH HOH . H 6 HOH A 76 235 76 HOH HOH . H 6 HOH A 77 236 77 HOH HOH . H 6 HOH A 78 237 78 HOH HOH . H 6 HOH A 79 238 79 HOH HOH . H 6 HOH A 80 239 80 HOH HOH . H 6 HOH A 81 240 81 HOH HOH . H 6 HOH A 82 241 82 HOH HOH . H 6 HOH A 83 242 83 HOH HOH . H 6 HOH A 84 243 84 HOH HOH . H 6 HOH A 85 244 85 HOH HOH . H 6 HOH A 86 245 86 HOH HOH . H 6 HOH A 87 246 87 HOH HOH . H 6 HOH A 88 247 88 HOH HOH . H 6 HOH A 89 248 89 HOH HOH . H 6 HOH A 90 249 90 HOH HOH . H 6 HOH A 91 250 91 HOH HOH . H 6 HOH A 92 251 92 HOH HOH . H 6 HOH A 93 252 93 HOH HOH . H 6 HOH A 94 253 94 HOH HOH . H 6 HOH A 95 254 95 HOH HOH . H 6 HOH A 96 255 96 HOH HOH . H 6 HOH A 97 256 97 HOH HOH . H 6 HOH A 98 257 98 HOH HOH . H 6 HOH A 99 258 99 HOH HOH . H 6 HOH A 100 259 100 HOH HOH . H 6 HOH A 101 260 101 HOH HOH . H 6 HOH A 102 261 102 HOH HOH . H 6 HOH A 103 262 103 HOH HOH . H 6 HOH A 104 263 104 HOH HOH . H 6 HOH A 105 264 105 HOH HOH . H 6 HOH A 106 265 106 HOH HOH . H 6 HOH A 107 266 107 HOH HOH . H 6 HOH A 108 267 108 HOH HOH . H 6 HOH A 109 268 109 HOH HOH . H 6 HOH A 110 269 110 HOH HOH . H 6 HOH A 111 270 111 HOH HOH . H 6 HOH A 112 271 112 HOH HOH . H 6 HOH A 113 272 113 HOH HOH . H 6 HOH A 114 273 114 HOH HOH . H 6 HOH A 115 274 115 HOH HOH . H 6 HOH A 116 275 116 HOH HOH . H 6 HOH A 117 276 117 HOH HOH . H 6 HOH A 118 277 118 HOH HOH . H 6 HOH A 119 278 119 HOH HOH . H 6 HOH A 120 279 120 HOH HOH . H 6 HOH A 121 280 121 HOH HOH . H 6 HOH A 122 281 122 HOH HOH . H 6 HOH A 123 282 123 HOH HOH . H 6 HOH A 124 283 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LCY . A . G 5 7.203 18.681 4.116 0.5 17.02 ? C1 LCY 200 A 1 HETATM 2 C C1 LCY . B . G 5 6.112 18.573 3.839 0.5 19.57 ? C1 LCY 200 A 1 HETATM 3 C C2 LCY . A . G 5 6.87 18.786 5.593 0.5 18.6 ? C2 LCY 200 A 1 HETATM 4 C C2 LCY . B . G 5 5.762 18.617 5.313 0.5 21.12 ? C2 LCY 200 A 1 HETATM 5 C C3 LCY . A . G 5 8.178 18.439 6.259 0.5 19.33 ? C3 LCY 200 A 1 HETATM 6 C C3 LCY . B . G 5 4.256 18.725 5.284 0.5 21.91 ? C3 LCY 200 A 1 HETATM 7 O O2 LCY . A . G 5 8.344 18.529 7.476 0.5 21.07 ? O2 LCY 200 A 1 HETATM 8 O O2 LCY . B . G 5 3.587 18.881 6.29 0.5 24.1 ? O2 LCY 200 A 1 HETATM 9 N N1 LCY . A . G 5 9.08 18.044 5.361 0.5 18.03 ? N1 LCY 200 A 1 HETATM 10 N N1 LCY . B . G 5 3.786 18.626 4.046 0.5 22.25 ? N1 LCY 200 A 1 HETATM 11 C C4 LCY . A . G 5 8.538 18.008 4.145 0.5 16.89 ? C4 LCY 200 A 1 HETATM 12 C C4 LCY . B . G 5 4.767 18.248 3.24 0.5 21.68 ? C4 LCY 200 A 1 HETATM 13 O O1 LCY . A . G 5 9.028 17.493 3.152 0.5 16.55 ? O1 LCY 200 A 1 HETATM 14 O O1 LCY . B . G 5 4.611 17.663 2.174 0.5 23.87 ? O1 LCY 200 A 1 HETATM 15 C C5 LCY . A . G 5 10.471 17.72 5.666 0.5 18.92 ? C5 LCY 200 A 1 HETATM 16 C C5 LCY . B . G 5 2.41 18.905 3.632 0.5 22.77 ? C5 LCY 200 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #