data_3A33 # _model_server_result.job_id v1-qxTEKXko9J-cY361wPw _model_server_result.datetime_utc '2024-12-26 05:54:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":148}' # _entry.id 3A33 # _exptl.entry_id 3A33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3A33 _cell.length_a 72.5 _cell.length_b 72.5 _cell.length_c 176.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 29.433333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 88 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 85 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 76 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.333 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3A33 _atom_sites.fract_transf_matrix[1][1] 0.013797 _atom_sites.fract_transf_matrix[1][2] 0.007966 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 148 1 GOL GOL . D 4 HOH A 1 149 2 HOH HOH . D 4 HOH A 2 150 4 HOH HOH . D 4 HOH A 3 151 5 HOH HOH . D 4 HOH A 4 152 6 HOH HOH . D 4 HOH A 5 153 7 HOH HOH . D 4 HOH A 6 154 8 HOH HOH . D 4 HOH A 7 155 9 HOH HOH . D 4 HOH A 8 156 10 HOH HOH . D 4 HOH A 9 157 11 HOH HOH . D 4 HOH A 10 158 12 HOH HOH . D 4 HOH A 11 159 14 HOH HOH . D 4 HOH A 12 160 16 HOH HOH . D 4 HOH A 13 161 17 HOH HOH . D 4 HOH A 14 162 20 HOH HOH . D 4 HOH A 15 163 21 HOH HOH . D 4 HOH A 16 164 22 HOH HOH . D 4 HOH A 17 165 23 HOH HOH . D 4 HOH A 18 166 24 HOH HOH . D 4 HOH A 19 167 26 HOH HOH . D 4 HOH A 20 168 27 HOH HOH . D 4 HOH A 21 169 31 HOH HOH . D 4 HOH A 22 170 32 HOH HOH . D 4 HOH A 23 171 33 HOH HOH . D 4 HOH A 24 172 37 HOH HOH . D 4 HOH A 25 173 38 HOH HOH . D 4 HOH A 26 174 40 HOH HOH . D 4 HOH A 27 175 41 HOH HOH . D 4 HOH A 28 176 42 HOH HOH . D 4 HOH A 29 177 44 HOH HOH . D 4 HOH A 30 178 45 HOH HOH . D 4 HOH A 31 179 47 HOH HOH . D 4 HOH A 32 180 50 HOH HOH . D 4 HOH A 33 181 51 HOH HOH . D 4 HOH A 34 182 53 HOH HOH . D 4 HOH A 35 184 57 HOH HOH . D 4 HOH A 36 185 58 HOH HOH . D 4 HOH A 37 186 59 HOH HOH . D 4 HOH A 38 187 61 HOH HOH . D 4 HOH A 39 188 62 HOH HOH . E 4 HOH B 1 77 3 HOH HOH . E 4 HOH B 2 78 13 HOH HOH . E 4 HOH B 3 79 15 HOH HOH . E 4 HOH B 4 80 18 HOH HOH . E 4 HOH B 5 81 19 HOH HOH . E 4 HOH B 6 82 25 HOH HOH . E 4 HOH B 7 83 28 HOH HOH . E 4 HOH B 8 84 29 HOH HOH . E 4 HOH B 9 85 30 HOH HOH . E 4 HOH B 10 86 34 HOH HOH . E 4 HOH B 11 87 35 HOH HOH . E 4 HOH B 12 88 36 HOH HOH . E 4 HOH B 13 89 39 HOH HOH . E 4 HOH B 14 90 43 HOH HOH . E 4 HOH B 15 91 46 HOH HOH . E 4 HOH B 16 92 48 HOH HOH . E 4 HOH B 17 93 49 HOH HOH . E 4 HOH B 18 94 52 HOH HOH . E 4 HOH B 19 95 54 HOH HOH . E 4 HOH B 20 96 55 HOH HOH . E 4 HOH B 21 97 60 HOH HOH . E 4 HOH B 22 98 63 HOH HOH . E 4 HOH B 23 183 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -15.092 26.138 -4.695 1 35.88 ? C1 GOL 148 A 1 HETATM 2 O O1 GOL . . . C 3 -14.748 25.138 -5.647 1 34 ? O1 GOL 148 A 1 HETATM 3 C C2 GOL . . . C 3 -16.61 26.131 -4.502 1 37.45 ? C2 GOL 148 A 1 HETATM 4 O O2 GOL . . . C 3 -16.968 26.846 -3.335 1 39 ? O2 GOL 148 A 1 HETATM 5 C C3 GOL . . . C 3 -17.259 26.828 -5.687 1 35.1 ? C3 GOL 148 A 1 HETATM 6 O O3 GOL . . . C 3 -17.042 28.206 -5.554 1 32.83 ? O3 GOL 148 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #