data_3A34 # _model_server_result.job_id '_ZluXTP95-OEAuNkiRgiNw' _model_server_result.datetime_utc '2025-09-01 00:10:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a34 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 3A34 # _exptl.entry_id 3A34 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A34 _cell.length_a 78.357 _cell.length_b 78.357 _cell.length_c 37.312 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A34 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 I NA NA . A NA 137 1_555 K O HOH . A HOH 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc6 I NA NA . A NA 137 1_555 K O HOH . A HOH 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 19 n n N H ARG sing 20 n n N H2 ARG sing 21 n n CA C ARG sing 22 n n CA CB ARG sing 23 n n CA HA ARG sing 24 n n C O ARG doub 25 n n C OXT ARG sing 26 n n CB CG ARG sing 27 n n CB HB2 ARG sing 28 n n CB HB3 ARG sing 29 n n CG CD ARG sing 30 n n CG HG2 ARG sing 31 n n CG HG3 ARG sing 32 n n CD NE ARG sing 33 n n CD HD2 ARG sing 34 n n CD HD3 ARG sing 35 n n NE CZ ARG sing 36 n n NE HE ARG sing 37 n n CZ NH1 ARG sing 38 n n CZ NH2 ARG doub 39 n n NH1 HH11 ARG sing 40 n n NH1 HH12 ARG sing 41 n n NH2 HH21 ARG sing 42 n n NH2 HH22 ARG sing 43 n n OXT HXT ARG sing 44 n n # _atom_sites.entry_id 3A34 _atom_sites.fract_transf_matrix[1][1] 0.012762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG A 1 130 1 ARG ARG . C 2 ARG A 1 131 2 ARG ARG . D 2 ARG A 1 132 3 ARG ARG . E 2 ARG A 1 133 4 ARG ARG . F 3 CL A 1 134 1 CL CL . G 3 CL A 1 135 2 CL CL . H 3 CL A 1 136 3 CL CL . I 4 NA A 1 137 4 NA NA . J 5 ACT A 1 138 5 ACT ACT . K 6 HOH A 1 139 3 HOH HOH . K 6 HOH A 2 140 4 HOH HOH . K 6 HOH A 3 141 5 HOH HOH . K 6 HOH A 4 142 6 HOH HOH . K 6 HOH A 5 143 7 HOH HOH . K 6 HOH A 6 144 8 HOH HOH . K 6 HOH A 7 145 9 HOH HOH . K 6 HOH A 8 146 10 HOH HOH . K 6 HOH A 9 147 11 HOH HOH . K 6 HOH A 10 148 12 HOH HOH . K 6 HOH A 11 149 13 HOH HOH . K 6 HOH A 12 150 14 HOH HOH . K 6 HOH A 13 151 15 HOH HOH . K 6 HOH A 14 152 16 HOH HOH . K 6 HOH A 15 153 17 HOH HOH . K 6 HOH A 16 154 18 HOH HOH . K 6 HOH A 17 155 19 HOH HOH . K 6 HOH A 18 156 20 HOH HOH . K 6 HOH A 19 157 21 HOH HOH . K 6 HOH A 20 158 22 HOH HOH . K 6 HOH A 21 159 23 HOH HOH . K 6 HOH A 22 160 24 HOH HOH . K 6 HOH A 23 161 25 HOH HOH . K 6 HOH A 24 162 26 HOH HOH . K 6 HOH A 25 163 27 HOH HOH . K 6 HOH A 26 164 28 HOH HOH . K 6 HOH A 27 165 29 HOH HOH . K 6 HOH A 28 166 30 HOH HOH . K 6 HOH A 29 167 31 HOH HOH . K 6 HOH A 30 168 32 HOH HOH . K 6 HOH A 31 169 33 HOH HOH . K 6 HOH A 32 170 34 HOH HOH . K 6 HOH A 33 171 35 HOH HOH . K 6 HOH A 34 172 36 HOH HOH . K 6 HOH A 35 173 37 HOH HOH . K 6 HOH A 36 174 38 HOH HOH . K 6 HOH A 37 175 39 HOH HOH . K 6 HOH A 38 176 40 HOH HOH . K 6 HOH A 39 177 41 HOH HOH . K 6 HOH A 40 178 42 HOH HOH . K 6 HOH A 41 179 43 HOH HOH . K 6 HOH A 42 180 44 HOH HOH . K 6 HOH A 43 181 45 HOH HOH . K 6 HOH A 44 182 46 HOH HOH . K 6 HOH A 45 183 47 HOH HOH . K 6 HOH A 46 184 48 HOH HOH . K 6 HOH A 47 185 49 HOH HOH . K 6 HOH A 48 186 50 HOH HOH . K 6 HOH A 49 187 51 HOH HOH . K 6 HOH A 50 188 52 HOH HOH . K 6 HOH A 51 189 53 HOH HOH . K 6 HOH A 52 190 54 HOH HOH . K 6 HOH A 53 191 55 HOH HOH . K 6 HOH A 54 192 56 HOH HOH . K 6 HOH A 55 193 57 HOH HOH . K 6 HOH A 56 194 58 HOH HOH . K 6 HOH A 57 195 59 HOH HOH . K 6 HOH A 58 196 60 HOH HOH . K 6 HOH A 59 197 61 HOH HOH . K 6 HOH A 60 198 62 HOH HOH . K 6 HOH A 61 199 63 HOH HOH . K 6 HOH A 62 200 64 HOH HOH . K 6 HOH A 63 201 65 HOH HOH . K 6 HOH A 64 202 66 HOH HOH . K 6 HOH A 65 203 67 HOH HOH . K 6 HOH A 66 204 68 HOH HOH . K 6 HOH A 67 205 69 HOH HOH . K 6 HOH A 68 206 70 HOH HOH . K 6 HOH A 69 207 71 HOH HOH . K 6 HOH A 70 208 72 HOH HOH . K 6 HOH A 71 209 73 HOH HOH . K 6 HOH A 72 210 74 HOH HOH . K 6 HOH A 73 211 75 HOH HOH . K 6 HOH A 74 212 76 HOH HOH . K 6 HOH A 75 213 77 HOH HOH . K 6 HOH A 76 214 78 HOH HOH . K 6 HOH A 77 215 79 HOH HOH . K 6 HOH A 78 216 80 HOH HOH . K 6 HOH A 79 217 81 HOH HOH . K 6 HOH A 80 218 82 HOH HOH . K 6 HOH A 81 219 83 HOH HOH . K 6 HOH A 82 220 84 HOH HOH . K 6 HOH A 83 221 85 HOH HOH . K 6 HOH A 84 222 86 HOH HOH . K 6 HOH A 85 223 87 HOH HOH . K 6 HOH A 86 224 88 HOH HOH . K 6 HOH A 87 225 89 HOH HOH . K 6 HOH A 88 226 90 HOH HOH . K 6 HOH A 89 227 91 HOH HOH . K 6 HOH A 90 228 92 HOH HOH . K 6 HOH A 91 229 93 HOH HOH . K 6 HOH A 92 230 94 HOH HOH . K 6 HOH A 93 231 95 HOH HOH . K 6 HOH A 94 232 96 HOH HOH . K 6 HOH A 95 233 97 HOH HOH . K 6 HOH A 96 234 98 HOH HOH . K 6 HOH A 97 235 99 HOH HOH . K 6 HOH A 98 236 100 HOH HOH . K 6 HOH A 99 237 101 HOH HOH . K 6 HOH A 100 238 102 HOH HOH . K 6 HOH A 101 239 103 HOH HOH . K 6 HOH A 102 240 104 HOH HOH . K 6 HOH A 103 241 105 HOH HOH . K 6 HOH A 104 242 106 HOH HOH . K 6 HOH A 105 243 107 HOH HOH . K 6 HOH A 106 244 108 HOH HOH . K 6 HOH A 107 245 109 HOH HOH . K 6 HOH A 108 246 110 HOH HOH . K 6 HOH A 109 247 111 HOH HOH . K 6 HOH A 110 248 112 HOH HOH . K 6 HOH A 111 249 113 HOH HOH . K 6 HOH A 112 250 114 HOH HOH . K 6 HOH A 113 251 115 HOH HOH . K 6 HOH A 114 252 116 HOH HOH . K 6 HOH A 115 253 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . B 2 -24.055 -12.294 1.935 0.6 23.9 ? N ARG 130 A 1 HETATM 2 C CA ARG . . . B 2 -25.058 -11.884 0.947 0.6 23.79 ? CA ARG 130 A 1 HETATM 3 C C ARG . . . B 2 -24.943 -12.516 -0.457 0.6 23.92 ? C ARG 130 A 1 HETATM 4 O O ARG . . . B 2 -25.614 -12.095 -1.345 0.6 24.17 ? O ARG 130 A 1 HETATM 5 C CB ARG . . . B 2 -25.33 -10.378 0.963 0.6 23.74 ? CB ARG 130 A 1 HETATM 6 C CG ARG . . . B 2 -26.441 -9.774 0.069 0.6 22.99 ? CG ARG 130 A 1 HETATM 7 C CD ARG . . . B 2 -26.153 -8.27 -0.334 0.6 21.38 ? CD ARG 130 A 1 HETATM 8 N NE ARG . . . B 2 -26.141 -7.958 -1.827 0.6 20.09 ? NE ARG 130 A 1 HETATM 9 C CZ ARG . . . B 2 -26.191 -6.69 -2.34 0.6 18.27 ? CZ ARG 130 A 1 HETATM 10 N NH1 ARG . . . B 2 -26.243 -6.42 -3.65 0.6 16.9 ? NH1 ARG 130 A 1 HETATM 11 N NH2 ARG . . . B 2 -26.255 -5.684 -1.519 0.6 15.48 ? NH2 ARG 130 A 1 HETATM 12 O OXT ARG . . . B 2 -24.167 -13.448 -0.667 0.6 24.06 ? OXT ARG 130 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #