data_3A3B # _model_server_result.job_id FENWKajWUgoNGtSpzRtHCw _model_server_result.datetime_utc '2024-11-23 11:54:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":191}' # _entry.id 3A3B # _exptl.entry_id 3A3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A3B _cell.length_a 46.858 _cell.length_b 47.087 _cell.length_c 160.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3A3B _atom_sites.fract_transf_matrix[1][1] 0.021341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN B 1 191 1 FMN FMN . D 3 RBF A 1 191 1 RBF RBF . E 4 HOH B 1 192 192 HOH HOH . E 4 HOH B 2 193 8 HOH HOH . E 4 HOH B 3 194 9 HOH HOH . E 4 HOH B 4 195 11 HOH HOH . E 4 HOH B 5 196 14 HOH HOH . E 4 HOH B 6 197 15 HOH HOH . E 4 HOH B 7 198 16 HOH HOH . E 4 HOH B 8 199 17 HOH HOH . E 4 HOH B 9 200 18 HOH HOH . E 4 HOH B 10 201 19 HOH HOH . E 4 HOH B 11 202 20 HOH HOH . E 4 HOH B 12 203 22 HOH HOH . E 4 HOH B 13 204 24 HOH HOH . E 4 HOH B 14 205 26 HOH HOH . E 4 HOH B 15 206 28 HOH HOH . E 4 HOH B 16 207 31 HOH HOH . E 4 HOH B 17 208 33 HOH HOH . E 4 HOH B 18 209 35 HOH HOH . E 4 HOH B 19 210 37 HOH HOH . E 4 HOH B 20 211 39 HOH HOH . E 4 HOH B 21 212 40 HOH HOH . E 4 HOH B 22 213 41 HOH HOH . E 4 HOH B 23 214 42 HOH HOH . E 4 HOH B 24 215 43 HOH HOH . E 4 HOH B 25 216 48 HOH HOH . E 4 HOH B 26 217 49 HOH HOH . E 4 HOH B 27 218 50 HOH HOH . E 4 HOH B 28 219 51 HOH HOH . E 4 HOH B 29 220 52 HOH HOH . E 4 HOH B 30 221 53 HOH HOH . E 4 HOH B 31 222 54 HOH HOH . E 4 HOH B 32 223 55 HOH HOH . E 4 HOH B 33 224 58 HOH HOH . E 4 HOH B 34 225 60 HOH HOH . E 4 HOH B 35 226 61 HOH HOH . E 4 HOH B 36 227 62 HOH HOH . E 4 HOH B 37 228 63 HOH HOH . E 4 HOH B 38 229 66 HOH HOH . E 4 HOH B 39 230 67 HOH HOH . E 4 HOH B 40 231 69 HOH HOH . E 4 HOH B 41 232 72 HOH HOH . E 4 HOH B 42 233 75 HOH HOH . E 4 HOH B 43 234 78 HOH HOH . E 4 HOH B 44 235 79 HOH HOH . E 4 HOH B 45 236 82 HOH HOH . E 4 HOH B 46 237 84 HOH HOH . E 4 HOH B 47 238 85 HOH HOH . E 4 HOH B 48 239 87 HOH HOH . E 4 HOH B 49 240 90 HOH HOH . E 4 HOH B 50 241 91 HOH HOH . E 4 HOH B 51 242 92 HOH HOH . E 4 HOH B 52 243 98 HOH HOH . E 4 HOH B 53 244 99 HOH HOH . E 4 HOH B 54 245 100 HOH HOH . E 4 HOH B 55 246 103 HOH HOH . E 4 HOH B 56 247 111 HOH HOH . E 4 HOH B 57 248 112 HOH HOH . E 4 HOH B 58 249 114 HOH HOH . E 4 HOH B 59 250 116 HOH HOH . E 4 HOH B 60 251 117 HOH HOH . E 4 HOH B 61 252 118 HOH HOH . E 4 HOH B 62 253 119 HOH HOH . E 4 HOH B 63 254 120 HOH HOH . E 4 HOH B 64 255 121 HOH HOH . E 4 HOH B 65 256 123 HOH HOH . E 4 HOH B 66 257 126 HOH HOH . E 4 HOH B 67 258 129 HOH HOH . E 4 HOH B 68 259 130 HOH HOH . E 4 HOH B 69 260 131 HOH HOH . E 4 HOH B 70 261 134 HOH HOH . E 4 HOH B 71 262 135 HOH HOH . E 4 HOH B 72 263 136 HOH HOH . E 4 HOH B 73 264 140 HOH HOH . E 4 HOH B 74 265 143 HOH HOH . E 4 HOH B 75 266 146 HOH HOH . E 4 HOH B 76 267 152 HOH HOH . E 4 HOH B 77 268 158 HOH HOH . E 4 HOH B 78 269 159 HOH HOH . E 4 HOH B 79 270 160 HOH HOH . E 4 HOH B 80 271 161 HOH HOH . E 4 HOH B 81 272 162 HOH HOH . E 4 HOH B 82 273 163 HOH HOH . E 4 HOH B 83 274 164 HOH HOH . E 4 HOH B 84 275 182 HOH HOH . E 4 HOH B 85 276 166 HOH HOH . E 4 HOH B 86 277 167 HOH HOH . E 4 HOH B 87 278 168 HOH HOH . E 4 HOH B 88 279 169 HOH HOH . E 4 HOH B 89 280 170 HOH HOH . E 4 HOH B 90 281 171 HOH HOH . E 4 HOH B 91 282 187 HOH HOH . E 4 HOH B 92 283 174 HOH HOH . E 4 HOH B 93 284 177 HOH HOH . E 4 HOH B 94 285 178 HOH HOH . E 4 HOH B 95 286 181 HOH HOH . E 4 HOH B 96 287 183 HOH HOH . E 4 HOH B 97 288 191 HOH HOH . F 4 HOH A 1 192 1 HOH HOH . F 4 HOH A 2 193 2 HOH HOH . F 4 HOH A 3 194 3 HOH HOH . F 4 HOH A 4 195 4 HOH HOH . F 4 HOH A 5 196 5 HOH HOH . F 4 HOH A 6 197 6 HOH HOH . F 4 HOH A 7 198 7 HOH HOH . F 4 HOH A 8 199 10 HOH HOH . F 4 HOH A 9 200 12 HOH HOH . F 4 HOH A 10 201 13 HOH HOH . F 4 HOH A 11 202 21 HOH HOH . F 4 HOH A 12 203 23 HOH HOH . F 4 HOH A 13 204 25 HOH HOH . F 4 HOH A 14 205 27 HOH HOH . F 4 HOH A 15 206 29 HOH HOH . F 4 HOH A 16 207 30 HOH HOH . F 4 HOH A 17 208 32 HOH HOH . F 4 HOH A 18 209 34 HOH HOH . F 4 HOH A 19 210 36 HOH HOH . F 4 HOH A 20 211 38 HOH HOH . F 4 HOH A 21 212 44 HOH HOH . F 4 HOH A 22 213 45 HOH HOH . F 4 HOH A 23 214 46 HOH HOH . F 4 HOH A 24 215 47 HOH HOH . F 4 HOH A 25 216 56 HOH HOH . F 4 HOH A 26 217 57 HOH HOH . F 4 HOH A 27 218 59 HOH HOH . F 4 HOH A 28 219 64 HOH HOH . F 4 HOH A 29 220 65 HOH HOH . F 4 HOH A 30 221 68 HOH HOH . F 4 HOH A 31 222 70 HOH HOH . F 4 HOH A 32 223 71 HOH HOH . F 4 HOH A 33 224 73 HOH HOH . F 4 HOH A 34 225 74 HOH HOH . F 4 HOH A 35 226 76 HOH HOH . F 4 HOH A 36 227 77 HOH HOH . F 4 HOH A 37 228 80 HOH HOH . F 4 HOH A 38 229 81 HOH HOH . F 4 HOH A 39 230 83 HOH HOH . F 4 HOH A 40 231 86 HOH HOH . F 4 HOH A 41 232 88 HOH HOH . F 4 HOH A 42 233 93 HOH HOH . F 4 HOH A 43 234 95 HOH HOH . F 4 HOH A 44 235 96 HOH HOH . F 4 HOH A 45 236 97 HOH HOH . F 4 HOH A 46 237 102 HOH HOH . F 4 HOH A 47 238 109 HOH HOH . F 4 HOH A 48 239 113 HOH HOH . F 4 HOH A 49 240 115 HOH HOH . F 4 HOH A 50 241 122 HOH HOH . F 4 HOH A 51 242 127 HOH HOH . F 4 HOH A 52 243 128 HOH HOH . F 4 HOH A 53 244 132 HOH HOH . F 4 HOH A 54 245 137 HOH HOH . F 4 HOH A 55 246 138 HOH HOH . F 4 HOH A 56 247 139 HOH HOH . F 4 HOH A 57 248 142 HOH HOH . F 4 HOH A 58 249 147 HOH HOH . F 4 HOH A 59 250 151 HOH HOH . F 4 HOH A 60 251 153 HOH HOH . F 4 HOH A 61 252 155 HOH HOH . F 4 HOH A 62 253 156 HOH HOH . F 4 HOH A 63 254 173 HOH HOH . F 4 HOH A 64 255 175 HOH HOH . F 4 HOH A 65 256 179 HOH HOH . F 4 HOH A 66 257 180 HOH HOH . F 4 HOH A 67 260 188 HOH HOH . F 4 HOH A 68 261 189 HOH HOH . F 4 HOH A 69 262 190 HOH HOH . F 4 HOH A 70 275 165 HOH HOH . F 4 HOH A 71 282 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 3.94 -11.92 35.763 1 17.9 ? N1 FMN 191 B 1 HETATM 2 C C2 FMN . . . C 2 4.783 -12.383 34.82 1 18.84 ? C2 FMN 191 B 1 HETATM 3 O O2 FMN . . . C 2 5.199 -13.52 34.896 1 17.43 ? O2 FMN 191 B 1 HETATM 4 N N3 FMN . . . C 2 5.169 -11.551 33.793 1 18.81 ? N3 FMN 191 B 1 HETATM 5 C C4 FMN . . . C 2 4.675 -10.279 33.694 1 17.7 ? C4 FMN 191 B 1 HETATM 6 O O4 FMN . . . C 2 4.844 -9.688 32.617 1 17.87 ? O4 FMN 191 B 1 HETATM 7 C C4A FMN . . . C 2 3.814 -9.809 34.673 1 19.32 ? C4A FMN 191 B 1 HETATM 8 N N5 FMN . . . C 2 3.312 -8.527 34.674 1 18.76 ? N5 FMN 191 B 1 HETATM 9 C C5A FMN . . . C 2 2.432 -8.141 35.678 1 18.23 ? C5A FMN 191 B 1 HETATM 10 C C6 FMN . . . C 2 1.943 -6.847 35.677 1 19.14 ? C6 FMN 191 B 1 HETATM 11 C C7 FMN . . . C 2 1.076 -6.365 36.652 1 19.07 ? C7 FMN 191 B 1 HETATM 12 C C7M FMN . . . C 2 0.865 -4.867 36.77 1 22.15 ? C7M FMN 191 B 1 HETATM 13 C C8 FMN . . . C 2 0.71 -7.22 37.685 1 19.84 ? C8 FMN 191 B 1 HETATM 14 C C8M FMN . . . C 2 -0.143 -6.676 38.806 1 22.2 ? C8M FMN 191 B 1 HETATM 15 C C9 FMN . . . C 2 1.206 -8.54 37.722 1 19.78 ? C9 FMN 191 B 1 HETATM 16 C C9A FMN . . . C 2 2.071 -9.005 36.702 1 18.32 ? C9A FMN 191 B 1 HETATM 17 N N10 FMN . . . C 2 2.602 -10.266 36.719 1 19.65 ? N10 FMN 191 B 1 HETATM 18 C C10 FMN . . . C 2 3.447 -10.66 35.716 1 19.17 ? C10 FMN 191 B 1 HETATM 19 C C1' FMN . . . C 2 2.274 -11.278 37.798 1 18.54 ? C1' FMN 191 B 1 HETATM 20 C C2' FMN . . . C 2 1.144 -12.251 37.382 1 21.12 ? C2' FMN 191 B 1 HETATM 21 O O2' FMN . . . C 2 -0.044 -11.546 37.097 1 18.93 ? O2' FMN 191 B 1 HETATM 22 C C3' FMN . . . C 2 0.895 -13.162 38.585 1 21.25 ? C3' FMN 191 B 1 HETATM 23 O O3' FMN . . . C 2 2.125 -13.807 38.845 1 20.42 ? O3' FMN 191 B 1 HETATM 24 C C4' FMN . . . C 2 -0.217 -14.22 38.407 1 24.49 ? C4' FMN 191 B 1 HETATM 25 O O4' FMN . . . C 2 -1.423 -13.664 37.998 1 19.58 ? O4' FMN 191 B 1 HETATM 26 C C5' FMN . . . C 2 -0.787 -14.519 39.78 1 31.02 ? C5' FMN 191 B 1 HETATM 27 O O5' FMN . . . C 2 -0.094 -15.55 40.322 1 35.21 ? O5' FMN 191 B 1 HETATM 28 P P FMN . . . C 2 0.787 -15.361 41.692 1 36.29 ? P FMN 191 B 1 HETATM 29 O O1P FMN . . . C 2 0.969 -16.829 41.992 1 35.88 ? O1P FMN 191 B 1 HETATM 30 O O2P FMN . . . C 2 0.117 -14.57 42.81 1 33.34 ? O2P FMN 191 B 1 HETATM 31 O O3P FMN . . . C 2 2.093 -14.682 41.315 1 35.01 ? O3P FMN 191 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #