data_3A3B # _model_server_result.job_id 8bj6qJgusIFdBqGFIz79TQ _model_server_result.datetime_utc '2024-11-23 11:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3a3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":191}' # _entry.id 3A3B # _exptl.entry_id 3A3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.364 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3A3B _cell.length_a 46.858 _cell.length_b 47.087 _cell.length_c 160.923 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3A3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RBF sing 331 n n N1 C10 RBF doub 332 n n C2 O2 RBF doub 333 n n C2 N3 RBF sing 334 n n N3 C4 RBF sing 335 n n N3 HN3 RBF sing 336 n n C4 O4 RBF doub 337 n n C4 C4A RBF sing 338 n n C4A N5 RBF doub 339 n n C4A C10 RBF sing 340 n n N5 C5A RBF sing 341 n n C5A C6 RBF doub 342 n y C5A C9A RBF sing 343 n y C6 C7 RBF sing 344 n y C6 HC6 RBF sing 345 n n C7 C7M RBF sing 346 n n C7 C8 RBF doub 347 n y C7M HC71 RBF sing 348 n n C7M HC72 RBF sing 349 n n C7M HC73 RBF sing 350 n n C8 C8M RBF sing 351 n n C8 C9 RBF sing 352 n y C8M HC81 RBF sing 353 n n C8M HC82 RBF sing 354 n n C8M HC83 RBF sing 355 n n C9 C9A RBF doub 356 n y C9 HC9 RBF sing 357 n n C9A N10 RBF sing 358 n n N10 C10 RBF sing 359 n n N10 C1' RBF sing 360 n n C1' C2' RBF sing 361 n n C1' HC11 RBF sing 362 n n C1' HC12 RBF sing 363 n n C2' O2' RBF sing 364 n n C2' C3' RBF sing 365 n n C2' HC2' RBF sing 366 n n O2' HO2' RBF sing 367 n n C3' O3' RBF sing 368 n n C3' C4' RBF sing 369 n n C3' HC3' RBF sing 370 n n O3' HO3' RBF sing 371 n n C4' O4' RBF sing 372 n n C4' C5' RBF sing 373 n n C4' HC4' RBF sing 374 n n O4' HO4' RBF sing 375 n n C5' O5' RBF sing 376 n n C5' HC51 RBF sing 377 n n C5' HC52 RBF sing 378 n n O5' HO5' RBF sing 379 n n # _atom_sites.entry_id 3A3B _atom_sites.fract_transf_matrix[1][1] 0.021341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN B 1 191 1 FMN FMN . D 3 RBF A 1 191 1 RBF RBF . E 4 HOH B 1 192 192 HOH HOH . E 4 HOH B 2 193 8 HOH HOH . E 4 HOH B 3 194 9 HOH HOH . E 4 HOH B 4 195 11 HOH HOH . E 4 HOH B 5 196 14 HOH HOH . E 4 HOH B 6 197 15 HOH HOH . E 4 HOH B 7 198 16 HOH HOH . E 4 HOH B 8 199 17 HOH HOH . E 4 HOH B 9 200 18 HOH HOH . E 4 HOH B 10 201 19 HOH HOH . E 4 HOH B 11 202 20 HOH HOH . E 4 HOH B 12 203 22 HOH HOH . E 4 HOH B 13 204 24 HOH HOH . E 4 HOH B 14 205 26 HOH HOH . E 4 HOH B 15 206 28 HOH HOH . E 4 HOH B 16 207 31 HOH HOH . E 4 HOH B 17 208 33 HOH HOH . E 4 HOH B 18 209 35 HOH HOH . E 4 HOH B 19 210 37 HOH HOH . E 4 HOH B 20 211 39 HOH HOH . E 4 HOH B 21 212 40 HOH HOH . E 4 HOH B 22 213 41 HOH HOH . E 4 HOH B 23 214 42 HOH HOH . E 4 HOH B 24 215 43 HOH HOH . E 4 HOH B 25 216 48 HOH HOH . E 4 HOH B 26 217 49 HOH HOH . E 4 HOH B 27 218 50 HOH HOH . E 4 HOH B 28 219 51 HOH HOH . E 4 HOH B 29 220 52 HOH HOH . E 4 HOH B 30 221 53 HOH HOH . E 4 HOH B 31 222 54 HOH HOH . E 4 HOH B 32 223 55 HOH HOH . E 4 HOH B 33 224 58 HOH HOH . E 4 HOH B 34 225 60 HOH HOH . E 4 HOH B 35 226 61 HOH HOH . E 4 HOH B 36 227 62 HOH HOH . E 4 HOH B 37 228 63 HOH HOH . E 4 HOH B 38 229 66 HOH HOH . E 4 HOH B 39 230 67 HOH HOH . E 4 HOH B 40 231 69 HOH HOH . E 4 HOH B 41 232 72 HOH HOH . E 4 HOH B 42 233 75 HOH HOH . E 4 HOH B 43 234 78 HOH HOH . E 4 HOH B 44 235 79 HOH HOH . E 4 HOH B 45 236 82 HOH HOH . E 4 HOH B 46 237 84 HOH HOH . E 4 HOH B 47 238 85 HOH HOH . E 4 HOH B 48 239 87 HOH HOH . E 4 HOH B 49 240 90 HOH HOH . E 4 HOH B 50 241 91 HOH HOH . E 4 HOH B 51 242 92 HOH HOH . E 4 HOH B 52 243 98 HOH HOH . E 4 HOH B 53 244 99 HOH HOH . E 4 HOH B 54 245 100 HOH HOH . E 4 HOH B 55 246 103 HOH HOH . E 4 HOH B 56 247 111 HOH HOH . E 4 HOH B 57 248 112 HOH HOH . E 4 HOH B 58 249 114 HOH HOH . E 4 HOH B 59 250 116 HOH HOH . E 4 HOH B 60 251 117 HOH HOH . E 4 HOH B 61 252 118 HOH HOH . E 4 HOH B 62 253 119 HOH HOH . E 4 HOH B 63 254 120 HOH HOH . E 4 HOH B 64 255 121 HOH HOH . E 4 HOH B 65 256 123 HOH HOH . E 4 HOH B 66 257 126 HOH HOH . E 4 HOH B 67 258 129 HOH HOH . E 4 HOH B 68 259 130 HOH HOH . E 4 HOH B 69 260 131 HOH HOH . E 4 HOH B 70 261 134 HOH HOH . E 4 HOH B 71 262 135 HOH HOH . E 4 HOH B 72 263 136 HOH HOH . E 4 HOH B 73 264 140 HOH HOH . E 4 HOH B 74 265 143 HOH HOH . E 4 HOH B 75 266 146 HOH HOH . E 4 HOH B 76 267 152 HOH HOH . E 4 HOH B 77 268 158 HOH HOH . E 4 HOH B 78 269 159 HOH HOH . E 4 HOH B 79 270 160 HOH HOH . E 4 HOH B 80 271 161 HOH HOH . E 4 HOH B 81 272 162 HOH HOH . E 4 HOH B 82 273 163 HOH HOH . E 4 HOH B 83 274 164 HOH HOH . E 4 HOH B 84 275 182 HOH HOH . E 4 HOH B 85 276 166 HOH HOH . E 4 HOH B 86 277 167 HOH HOH . E 4 HOH B 87 278 168 HOH HOH . E 4 HOH B 88 279 169 HOH HOH . E 4 HOH B 89 280 170 HOH HOH . E 4 HOH B 90 281 171 HOH HOH . E 4 HOH B 91 282 187 HOH HOH . E 4 HOH B 92 283 174 HOH HOH . E 4 HOH B 93 284 177 HOH HOH . E 4 HOH B 94 285 178 HOH HOH . E 4 HOH B 95 286 181 HOH HOH . E 4 HOH B 96 287 183 HOH HOH . E 4 HOH B 97 288 191 HOH HOH . F 4 HOH A 1 192 1 HOH HOH . F 4 HOH A 2 193 2 HOH HOH . F 4 HOH A 3 194 3 HOH HOH . F 4 HOH A 4 195 4 HOH HOH . F 4 HOH A 5 196 5 HOH HOH . F 4 HOH A 6 197 6 HOH HOH . F 4 HOH A 7 198 7 HOH HOH . F 4 HOH A 8 199 10 HOH HOH . F 4 HOH A 9 200 12 HOH HOH . F 4 HOH A 10 201 13 HOH HOH . F 4 HOH A 11 202 21 HOH HOH . F 4 HOH A 12 203 23 HOH HOH . F 4 HOH A 13 204 25 HOH HOH . F 4 HOH A 14 205 27 HOH HOH . F 4 HOH A 15 206 29 HOH HOH . F 4 HOH A 16 207 30 HOH HOH . F 4 HOH A 17 208 32 HOH HOH . F 4 HOH A 18 209 34 HOH HOH . F 4 HOH A 19 210 36 HOH HOH . F 4 HOH A 20 211 38 HOH HOH . F 4 HOH A 21 212 44 HOH HOH . F 4 HOH A 22 213 45 HOH HOH . F 4 HOH A 23 214 46 HOH HOH . F 4 HOH A 24 215 47 HOH HOH . F 4 HOH A 25 216 56 HOH HOH . F 4 HOH A 26 217 57 HOH HOH . F 4 HOH A 27 218 59 HOH HOH . F 4 HOH A 28 219 64 HOH HOH . F 4 HOH A 29 220 65 HOH HOH . F 4 HOH A 30 221 68 HOH HOH . F 4 HOH A 31 222 70 HOH HOH . F 4 HOH A 32 223 71 HOH HOH . F 4 HOH A 33 224 73 HOH HOH . F 4 HOH A 34 225 74 HOH HOH . F 4 HOH A 35 226 76 HOH HOH . F 4 HOH A 36 227 77 HOH HOH . F 4 HOH A 37 228 80 HOH HOH . F 4 HOH A 38 229 81 HOH HOH . F 4 HOH A 39 230 83 HOH HOH . F 4 HOH A 40 231 86 HOH HOH . F 4 HOH A 41 232 88 HOH HOH . F 4 HOH A 42 233 93 HOH HOH . F 4 HOH A 43 234 95 HOH HOH . F 4 HOH A 44 235 96 HOH HOH . F 4 HOH A 45 236 97 HOH HOH . F 4 HOH A 46 237 102 HOH HOH . F 4 HOH A 47 238 109 HOH HOH . F 4 HOH A 48 239 113 HOH HOH . F 4 HOH A 49 240 115 HOH HOH . F 4 HOH A 50 241 122 HOH HOH . F 4 HOH A 51 242 127 HOH HOH . F 4 HOH A 52 243 128 HOH HOH . F 4 HOH A 53 244 132 HOH HOH . F 4 HOH A 54 245 137 HOH HOH . F 4 HOH A 55 246 138 HOH HOH . F 4 HOH A 56 247 139 HOH HOH . F 4 HOH A 57 248 142 HOH HOH . F 4 HOH A 58 249 147 HOH HOH . F 4 HOH A 59 250 151 HOH HOH . F 4 HOH A 60 251 153 HOH HOH . F 4 HOH A 61 252 155 HOH HOH . F 4 HOH A 62 253 156 HOH HOH . F 4 HOH A 63 254 173 HOH HOH . F 4 HOH A 64 255 175 HOH HOH . F 4 HOH A 65 256 179 HOH HOH . F 4 HOH A 66 257 180 HOH HOH . F 4 HOH A 67 260 188 HOH HOH . F 4 HOH A 68 261 189 HOH HOH . F 4 HOH A 69 262 190 HOH HOH . F 4 HOH A 70 275 165 HOH HOH . F 4 HOH A 71 282 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . D 3 -15.947 -2.563 20.108 1 11.63 ? N1 RBF 191 A 1 HETATM 2 C C2 RBF . . . D 3 -16.22 -1.41 20.748 1 11.86 ? C2 RBF 191 A 1 HETATM 3 O O2 RBF . . . D 3 -15.395 -0.465 20.647 1 11.7 ? O2 RBF 191 A 1 HETATM 4 N N3 RBF . . . D 3 -17.324 -1.27 21.482 1 12.04 ? N3 RBF 191 A 1 HETATM 5 C C4 RBF . . . D 3 -18.213 -2.262 21.611 1 12.79 ? C4 RBF 191 A 1 HETATM 6 O O4 RBF . . . D 3 -19.255 -2.109 22.281 1 12.57 ? O4 RBF 191 A 1 HETATM 7 C C4A RBF . . . D 3 -17.96 -3.566 20.963 1 10.38 ? C4A RBF 191 A 1 HETATM 8 N N5 RBF . . . D 3 -18.808 -4.63 21.071 1 13.67 ? N5 RBF 191 A 1 HETATM 9 C C5A RBF . . . D 3 -18.536 -5.817 20.42 1 12.42 ? C5A RBF 191 A 1 HETATM 10 C C6 RBF . . . D 3 -19.39 -6.908 20.546 1 12.76 ? C6 RBF 191 A 1 HETATM 11 C C7 RBF . . . D 3 -19.102 -8.114 19.893 1 12.96 ? C7 RBF 191 A 1 HETATM 12 C C7M RBF . . . D 3 -20.017 -9.308 20.078 1 13.51 ? C7M RBF 191 A 1 HETATM 13 C C8 RBF . . . D 3 -17.881 -8.233 19.071 1 12.83 ? C8 RBF 191 A 1 HETATM 14 C C8M RBF . . . D 3 -17.518 -9.551 18.387 1 13.35 ? C8M RBF 191 A 1 HETATM 15 C C9 RBF . . . D 3 -17.024 -7.152 18.953 1 10.92 ? C9 RBF 191 A 1 HETATM 16 C C9A RBF . . . D 3 -17.303 -5.937 19.612 1 12.23 ? C9A RBF 191 A 1 HETATM 17 N N10 RBF . . . D 3 -16.421 -4.818 19.509 1 11.06 ? N10 RBF 191 A 1 HETATM 18 C C10 RBF . . . D 3 -16.756 -3.631 20.161 1 12.66 ? C10 RBF 191 A 1 HETATM 19 C C1' RBF . . . D 3 -15.163 -4.826 18.716 1 12.01 ? C1' RBF 191 A 1 HETATM 20 C C2' RBF . . . D 3 -15.304 -4.093 17.383 1 9.8 ? C2' RBF 191 A 1 HETATM 21 O O2' RBF . . . D 3 -16.375 -4.652 16.599 1 8.04 ? O2' RBF 191 A 1 HETATM 22 C C3' RBF . . . D 3 -13.995 -4.249 16.626 1 11.16 ? C3' RBF 191 A 1 HETATM 23 O O3' RBF . . . D 3 -13.01 -3.701 17.458 1 14.94 ? O3' RBF 191 A 1 HETATM 24 C C4' RBF . . . D 3 -13.922 -3.485 15.329 1 12.28 ? C4' RBF 191 A 1 HETATM 25 O O4' RBF . . . D 3 -14.82 -4.054 14.418 1 10.13 ? O4' RBF 191 A 1 HETATM 26 C C5' RBF . . . D 3 -12.559 -3.694 14.714 1 14.21 ? C5' RBF 191 A 1 HETATM 27 O O5' RBF . . . D 3 -12.404 -2.7 13.732 1 13.49 ? O5' RBF 191 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #